Ggra9045.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9045.t1
Unique NameGgra9045.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length245
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000176_piloncontigtig00000176_pilon:31404..32138 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3750.XP_008392568.1
PFAMsGSHPx
Max annot lvl35493|Streptophyta
KEGG rclassRC00011,RC00982
KEGG koko:K00432
KEGG ReactionR00274,R07034,R07035
KEGG Pathwayko00480,ko00590,ko04918,map00480,map00590,map04918
GOsGO:0003674,GO:0003824,GO:0004601,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0016209,GO:0016491,GO:0016684,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051716,GO:0055114,GO:0070887,GO:0097237,GO:0098754,GO:0098869,GO:1990748
Evalue2.14e-18
EggNOG OGsCOG0386@1|root,KOG1651@2759|Eukaryota,37PRN@33090|Viridiplantae,3G795@35493|Streptophyta,4JFAR@91835|fabids
EC1.11.1.9
DescriptionGlutathione peroxidase
COG categoryO
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9045Ggra9045Gracilaria gracilis GNS1m malegenetig00000176_pilon 31404..32138 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9045.t1.start1Ggra9045.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000176_pilon 31404..31406 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9045.t1.CDS1Ggra9045.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000176_pilon 31404..32138 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9045.t1.exon1Ggra9045.t1.exon1Gracilaria gracilis GNS1m maleexontig00000176_pilon 31404..32138 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9045.t1.stop1Ggra9045.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000176_pilon 32136..32138 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9045.t1Ggra9045.t1Gracilaria gracilis GNS1m malepolypeptidetig00000176_pilon 31404..32138 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9045.t1 ID=Ggra9045.t1|Name=Ggra9045.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=245bp
MISATGSRDMTSFTAPPTFNSFLKKNTLNGICRLSDKGTYKSNRVVPRAM
RMRRGVKPDPRIPRTLFEADSIRDINFEPFDFSTLKGKVVFVINVASDDS
GTDENYQMMSNLLEEYHGSGLEVLAFPSNWYGQREPRALKEIKKFVYEKY
NKNIKLFTKTDLEWNQVFALGCHYFPGEIIWNFHGKFLFNRYGVPVGRYD
LLTTYKYLHDEIDAQIHGGYAVEPREIEESTEGDSDLSEFVTFQ*
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spliced messenger RNA

>Ggra9045.t1 ID=Ggra9045.t1|Name=Ggra9045.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=735bp|location=Sequence derived from alignment at tig00000176_pilon:31404..32138+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATATCCGCGACCGGGAGCCGTGACATGACTTCCTTCACAGCACCTCC
GACGTTCAACAGCTTCCTGAAAAAGAACACACTGAATGGCATCTGTCGCC
TTTCAGATAAGGGCACATACAAGTCCAACCGAGTGGTCCCACGAGCTATG
CGTATGAGGCGAGGAGTCAAACCAGATCCGAGAATCCCGCGCACGTTGTT
CGAAGCAGATTCAATACGAGATATTAACTTTGAGCCTTTCGACTTCTCAA
CTCTGAAAGGGAAAGTGGTGTTCGTGATCAACGTGGCCTCAGACGACTCT
GGCACCGATGAGAACTACCAGATGATGTCCAACCTCCTCGAGGAGTATCA
TGGGTCTGGACTGGAGGTGTTGGCGTTTCCCAGCAACTGGTACGGACAAC
GAGAACCGCGTGCGCTGAAAGAGATCAAGAAGTTTGTGTACGAGAAGTAT
AACAAGAATATCAAGCTGTTCACGAAGACAGACCTGGAGTGGAATCAGGT
GTTCGCTCTTGGTTGTCACTATTTTCCGGGTGAAATCATCTGGAACTTTC
ATGGAAAGTTTCTGTTTAACCGATATGGGGTTCCTGTAGGGCGATACGAC
CTGCTAACGACTTACAAGTATCTGCATGACGAGATTGACGCGCAGATACA
TGGTGGGTACGCAGTTGAACCCAGAGAGATAGAGGAAAGCACAGAAGGTG
ATAGCGATCTTTCGGAGTTTGTGACTTTTCAATGA
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protein sequence of Ggra9045.t1

>Ggra9045.t1 ID=Ggra9045.t1|Name=Ggra9045.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=245bp
MISATGSRDMTSFTAPPTFNSFLKKNTLNGICRLSDKGTYKSNRVVPRAM
RMRRGVKPDPRIPRTLFEADSIRDINFEPFDFSTLKGKVVFVINVASDDS
GTDENYQMMSNLLEEYHGSGLEVLAFPSNWYGQREPRALKEIKKFVYEKY
NKNIKLFTKTDLEWNQVFALGCHYFPGEIIWNFHGKFLFNRYGVPVGRYD
LLTTYKYLHDEIDAQIHGGYAVEPREIEESTEGDSDLSEFVTFQ*
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mRNA from alignment at tig00000176_pilon:31404..32138+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9045.t1 ID=Ggra9045.t1|Name=Ggra9045.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=735bp|location=Sequence derived from alignment at tig00000176_pilon:31404..32138+ (Gracilaria gracilis GNS1m male)
ATGATATCCGCGACCGGGAGCCGTGACATGACTTCCTTCACAGCACCTCC
GACGTTCAACAGCTTCCTGAAAAAGAACACACTGAATGGCATCTGTCGCC
TTTCAGATAAGGGCACATACAAGTCCAACCGAGTGGTCCCACGAGCTATG
CGTATGAGGCGAGGAGTCAAACCAGATCCGAGAATCCCGCGCACGTTGTT
CGAAGCAGATTCAATACGAGATATTAACTTTGAGCCTTTCGACTTCTCAA
CTCTGAAAGGGAAAGTGGTGTTCGTGATCAACGTGGCCTCAGACGACTCT
GGCACCGATGAGAACTACCAGATGATGTCCAACCTCCTCGAGGAGTATCA
TGGGTCTGGACTGGAGGTGTTGGCGTTTCCCAGCAACTGGTACGGACAAC
GAGAACCGCGTGCGCTGAAAGAGATCAAGAAGTTTGTGTACGAGAAGTAT
AACAAGAATATCAAGCTGTTCACGAAGACAGACCTGGAGTGGAATCAGGT
GTTCGCTCTTGGTTGTCACTATTTTCCGGGTGAAATCATCTGGAACTTTC
ATGGAAAGTTTCTGTTTAACCGATATGGGGTTCCTGTAGGGCGATACGAC
CTGCTAACGACTTACAAGTATCTGCATGACGAGATTGACGCGCAGATACA
TGGTGGGTACGCAGTTGAACCCAGAGAGATAGAGGAAAGCACAGAAGGTG
ATAGCGATCTTTCGGAGTTTGTGACTTTTCAATGA
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Coding sequence (CDS) from alignment at tig00000176_pilon:31404..32138+

>Ggra9045.t1 ID=Ggra9045.t1|Name=Ggra9045.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=735bp|location=Sequence derived from alignment at tig00000176_pilon:31404..32138+ (Gracilaria gracilis GNS1m male)
ATGATATCCGCGACCGGGAGCCGTGACATGACTTCCTTCACAGCACCTCC
GACGTTCAACAGCTTCCTGAAAAAGAACACACTGAATGGCATCTGTCGCC
TTTCAGATAAGGGCACATACAAGTCCAACCGAGTGGTCCCACGAGCTATG
CGTATGAGGCGAGGAGTCAAACCAGATCCGAGAATCCCGCGCACGTTGTT
CGAAGCAGATTCAATACGAGATATTAACTTTGAGCCTTTCGACTTCTCAA
CTCTGAAAGGGAAAGTGGTGTTCGTGATCAACGTGGCCTCAGACGACTCT
GGCACCGATGAGAACTACCAGATGATGTCCAACCTCCTCGAGGAGTATCA
TGGGTCTGGACTGGAGGTGTTGGCGTTTCCCAGCAACTGGTACGGACAAC
GAGAACCGCGTGCGCTGAAAGAGATCAAGAAGTTTGTGTACGAGAAGTAT
AACAAGAATATCAAGCTGTTCACGAAGACAGACCTGGAGTGGAATCAGGT
GTTCGCTCTTGGTTGTCACTATTTTCCGGGTGAAATCATCTGGAACTTTC
ATGGAAAGTTTCTGTTTAACCGATATGGGGTTCCTGTAGGGCGATACGAC
CTGCTAACGACTTACAAGTATCTGCATGACGAGATTGACGCGCAGATACA
TGGTGGGTACGCAGTTGAACCCAGAGAGATAGAGGAAAGCACAGAAGGTG
ATAGCGATCTTTCGGAGTTTGTGACTTTTCAATGA
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