Ggra9041.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9041.t1
Unique Name	Ggra9041.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	690

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000860_pilon	contig	tig00000860_pilon:1394199..1396268 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	936053.I1CNA9
PFAMs	CBS,PB1
Max annot lvl	4751\|Fungi
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0012505,GO:0016020,GO:0031090,GO:0031965,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464
Evalue	1.84e-17
EggNOG OGs	COG0517@1\|root,2QVK2@2759\|Eukaryota,39AEJ@33154\|Opisthokonta,3NVCH@4751\|Fungi,1GWBD@112252\|Fungi incertae sedis
Description	PB1 domain
COG category	P

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9041	Ggra9041	Gracilaria gracilis GNS1m male	gene	tig00000860_pilon 1394199..1396268 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9041.t1.stop1	Ggra9041.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000860_pilon 1394199..1394201 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9041.t1.CDS1	Ggra9041.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000860_pilon 1394199..1396268 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9041.t1.exon1	Ggra9041.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000860_pilon 1394199..1396268 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9041.t1.start1	Ggra9041.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000860_pilon 1396266..1396268 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9041.t1	Ggra9041.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000860_pilon 1394199..1396268 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000860_pilon:1394199..1396268-
coding sequence from alignment at tig00000860_pilon:1394199..1396268-

mRNA sequence

>Ggra9041.t1 ID=Ggra9041.t1|Name=Ggra9041.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=690bp
MIPSRRGFEFMRAARETIEKPTLRPIVERSHFATLSAGHSVVEVCETLVR
ERLAAVVIVDSNNVLEGIFTCRDVASRVVAKNLNPYSTLLGQVMTKNPDS
ASPDYTVLESLQRMQACGFRHLPVVEDNTRIVIGLVDVLQLASETLVGLQ
SAADDTTRIAPHKTGSHYSQAAVRSRGGITSIFSSLFSNSYAQSEFVPED
RFHRIPNLQPQPRNLPSYYSHPTLSSSTRRQFNYRPSDPPSTLLSSSRGR
MVPPDTPVASFKFRDINNEYRRIKVPMNVGPGAYDQFVLDVRRRFAGSSS
VGAIKIKYLDEDKDEILISNDEDLESCFEDYLDMRSKTVLLRVYEADHAS
TSQIQSPVSSNPSSIMGSPHRHLNSVRTELSSKSSGPASEDYREGSRTTA
TLKRRSSRPVLLTPSQVKGAEAHKRMLDGNNDEAIALYEEALRLDPDNAR
AQGGRGAARLFSGNSVGAEEDYRAALQMLDEGRGGSVGDLTFQMCIVGLV
ESLIDQRRYEEAVSAASRIDPNCGNTGCNDAFRDELDSASNAARVALEGN
EFADAMNCYSNAIRVETAYLKLIPTESARASLRLGRAKCYKALEDYDMAL
EDYEAAVRIEPESVAGHKGCGKCLSELEQFEKALESYKIAHKLDPADDEV
RNEIELIRNILPDPLESKKAEIAKLGVLLGGMKLPGKPS*

spliced messenger RNA

>Ggra9041.t1 ID=Ggra9041.t1|Name=Ggra9041.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2070bp|location=Sequence derived from alignment at tig00000860_pilon:1394199..1396268- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTCCCTCTCGGCGAGGGTTTGAATTTATGCGTGCTGCGCGTGAAAC
GATTGAGAAACCCACGTTACGCCCTATTGTCGAGCGCTCTCATTTTGCTA
CGCTGTCTGCTGGCCATAGCGTTGTGGAGGTTTGTGAGACTCTTGTGCGG
GAACGTCTAGCTGCAGTTGTCATCGTCGACAGCAACAACGTCCTAGAAGG
TATCTTCACATGTCGTGACGTAGCAAGCAGGGTCGTTGCGAAGAATTTGA
ATCCATATTCAACTCTTCTCGGGCAGGTGATGACTAAAAACCCAGATTCT
GCAAGTCCGGACTACACCGTTTTGGAATCTCTTCAGCGTATGCAGGCATG
CGGATTTCGTCACTTGCCTGTTGTGGAAGACAATACTCGCATCGTCATTG
GACTCGTTGACGTCCTTCAGTTAGCGAGCGAAACATTAGTAGGTCTTCAA
TCGGCGGCCGACGACACTACTCGCATAGCACCTCACAAAACAGGCTCACA
CTACAGTCAAGCCGCAGTTCGCAGTCGTGGTGGGATCACCAGTATATTCA
GCAGTTTGTTTTCGAATTCCTATGCCCAAAGCGAATTTGTCCCGGAAGAC
CGTTTTCACCGTATCCCAAACCTTCAACCGCAGCCTCGAAACCTACCGAG
CTATTACTCTCATCCAACGCTTTCGTCTTCCACGAGAAGGCAGTTTAATT
ATCGCCCATCAGATCCTCCCAGCACGCTTTTGTCTAGCTCGCGCGGACGC
ATGGTTCCCCCGGACACACCAGTTGCATCATTCAAATTCAGAGACATAAA
CAATGAATATCGGAGGATAAAGGTCCCAATGAATGTAGGCCCTGGCGCTT
ATGATCAATTTGTCTTGGATGTTCGACGTCGTTTTGCAGGTTCAAGTAGC
GTTGGAGCTATCAAGATCAAATATCTTGACGAGGATAAGGATGAGATTCT
CATATCAAACGACGAGGATTTGGAATCATGCTTTGAGGACTATTTGGACA
TGCGAAGCAAGACAGTGCTTCTAAGAGTTTACGAAGCAGACCACGCGTCA
ACCAGCCAGATACAGTCACCTGTCTCCTCAAACCCAAGTTCGATTATGGG
GAGCCCACACAGGCATTTGAACTCCGTAAGAACAGAGTTGTCATCGAAGT
CTTCTGGACCAGCTTCAGAAGATTACCGAGAAGGCAGTCGCACGACAGCT
ACACTGAAGAGGAGATCATCGCGTCCAGTTTTGCTAACGCCGTCCCAGGT
AAAGGGTGCAGAGGCACACAAGAGAATGCTTGATGGGAACAACGATGAGG
CGATAGCTCTGTATGAAGAGGCGTTGAGGTTAGATCCGGACAACGCCAGA
GCACAAGGTGGCAGAGGAGCGGCACGACTATTTAGTGGGAATTCTGTAGG
AGCTGAAGAGGATTATAGGGCGGCGTTGCAAATGCTTGACGAAGGAAGAG
GTGGGTCTGTTGGCGACCTTACATTCCAGATGTGCATCGTGGGTTTGGTT
GAGTCTTTAATTGACCAAAGAAGATATGAGGAGGCTGTTTCCGCAGCTTC
ACGGATTGATCCCAACTGTGGGAACACTGGATGTAACGACGCTTTCCGGG
ATGAGCTTGATTCTGCTAGTAACGCTGCTCGGGTCGCTCTGGAAGGGAAT
GAGTTCGCCGATGCTATGAACTGTTATTCCAACGCGATTCGAGTTGAAAC
GGCGTACTTGAAGTTGATCCCTACTGAGAGTGCAAGAGCATCATTGCGAC
TAGGGAGGGCGAAGTGTTATAAAGCACTTGAGGATTACGACATGGCGTTG
GAAGATTACGAAGCAGCGGTGCGGATTGAGCCCGAAAGCGTTGCTGGGCA
CAAAGGATGTGGAAAGTGTTTGTCGGAACTTGAGCAGTTCGAGAAAGCGT
TGGAATCATACAAGATTGCTCACAAGCTGGATCCTGCAGATGATGAAGTG
AGGAATGAAATTGAGTTGATCAGGAACATTCTCCCTGATCCTCTTGAAAG
CAAGAAAGCTGAAATAGCTAAGCTTGGAGTTTTATTAGGTGGCATGAAAC
TACCAGGAAAACCATCATAA

protein sequence of Ggra9041.t1

>Ggra9041.t1 ID=Ggra9041.t1|Name=Ggra9041.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=690bp
MIPSRRGFEFMRAARETIEKPTLRPIVERSHFATLSAGHSVVEVCETLVR
ERLAAVVIVDSNNVLEGIFTCRDVASRVVAKNLNPYSTLLGQVMTKNPDS
ASPDYTVLESLQRMQACGFRHLPVVEDNTRIVIGLVDVLQLASETLVGLQ
SAADDTTRIAPHKTGSHYSQAAVRSRGGITSIFSSLFSNSYAQSEFVPED
RFHRIPNLQPQPRNLPSYYSHPTLSSSTRRQFNYRPSDPPSTLLSSSRGR
MVPPDTPVASFKFRDINNEYRRIKVPMNVGPGAYDQFVLDVRRRFAGSSS
VGAIKIKYLDEDKDEILISNDEDLESCFEDYLDMRSKTVLLRVYEADHAS
TSQIQSPVSSNPSSIMGSPHRHLNSVRTELSSKSSGPASEDYREGSRTTA
TLKRRSSRPVLLTPSQVKGAEAHKRMLDGNNDEAIALYEEALRLDPDNAR
AQGGRGAARLFSGNSVGAEEDYRAALQMLDEGRGGSVGDLTFQMCIVGLV
ESLIDQRRYEEAVSAASRIDPNCGNTGCNDAFRDELDSASNAARVALEGN
EFADAMNCYSNAIRVETAYLKLIPTESARASLRLGRAKCYKALEDYDMAL
EDYEAAVRIEPESVAGHKGCGKCLSELEQFEKALESYKIAHKLDPADDEV
RNEIELIRNILPDPLESKKAEIAKLGVLLGGMKLPGKPS*

mRNA from alignment at tig00000860_pilon:1394199..1396268-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9041.t1 ID=Ggra9041.t1|Name=Ggra9041.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2070bp|location=Sequence derived from alignment at tig00000860_pilon:1394199..1396268- (Gracilaria gracilis GNS1m male)
ATGATTCCCTCTCGGCGAGGGTTTGAATTTATGCGTGCTGCGCGTGAAAC
GATTGAGAAACCCACGTTACGCCCTATTGTCGAGCGCTCTCATTTTGCTA
CGCTGTCTGCTGGCCATAGCGTTGTGGAGGTTTGTGAGACTCTTGTGCGG
GAACGTCTAGCTGCAGTTGTCATCGTCGACAGCAACAACGTCCTAGAAGG
TATCTTCACATGTCGTGACGTAGCAAGCAGGGTCGTTGCGAAGAATTTGA
ATCCATATTCAACTCTTCTCGGGCAGGTGATGACTAAAAACCCAGATTCT
GCAAGTCCGGACTACACCGTTTTGGAATCTCTTCAGCGTATGCAGGCATG
CGGATTTCGTCACTTGCCTGTTGTGGAAGACAATACTCGCATCGTCATTG
GACTCGTTGACGTCCTTCAGTTAGCGAGCGAAACATTAGTAGGTCTTCAA
TCGGCGGCCGACGACACTACTCGCATAGCACCTCACAAAACAGGCTCACA
CTACAGTCAAGCCGCAGTTCGCAGTCGTGGTGGGATCACCAGTATATTCA
GCAGTTTGTTTTCGAATTCCTATGCCCAAAGCGAATTTGTCCCGGAAGAC
CGTTTTCACCGTATCCCAAACCTTCAACCGCAGCCTCGAAACCTACCGAG
CTATTACTCTCATCCAACGCTTTCGTCTTCCACGAGAAGGCAGTTTAATT
ATCGCCCATCAGATCCTCCCAGCACGCTTTTGTCTAGCTCGCGCGGACGC
ATGGTTCCCCCGGACACACCAGTTGCATCATTCAAATTCAGAGACATAAA
CAATGAATATCGGAGGATAAAGGTCCCAATGAATGTAGGCCCTGGCGCTT
ATGATCAATTTGTCTTGGATGTTCGACGTCGTTTTGCAGGTTCAAGTAGC
GTTGGAGCTATCAAGATCAAATATCTTGACGAGGATAAGGATGAGATTCT
CATATCAAACGACGAGGATTTGGAATCATGCTTTGAGGACTATTTGGACA
TGCGAAGCAAGACAGTGCTTCTAAGAGTTTACGAAGCAGACCACGCGTCA
ACCAGCCAGATACAGTCACCTGTCTCCTCAAACCCAAGTTCGATTATGGG
GAGCCCACACAGGCATTTGAACTCCGTAAGAACAGAGTTGTCATCGAAGT
CTTCTGGACCAGCTTCAGAAGATTACCGAGAAGGCAGTCGCACGACAGCT
ACACTGAAGAGGAGATCATCGCGTCCAGTTTTGCTAACGCCGTCCCAGGT
AAAGGGTGCAGAGGCACACAAGAGAATGCTTGATGGGAACAACGATGAGG
CGATAGCTCTGTATGAAGAGGCGTTGAGGTTAGATCCGGACAACGCCAGA
GCACAAGGTGGCAGAGGAGCGGCACGACTATTTAGTGGGAATTCTGTAGG
AGCTGAAGAGGATTATAGGGCGGCGTTGCAAATGCTTGACGAAGGAAGAG
GTGGGTCTGTTGGCGACCTTACATTCCAGATGTGCATCGTGGGTTTGGTT
GAGTCTTTAATTGACCAAAGAAGATATGAGGAGGCTGTTTCCGCAGCTTC
ACGGATTGATCCCAACTGTGGGAACACTGGATGTAACGACGCTTTCCGGG
ATGAGCTTGATTCTGCTAGTAACGCTGCTCGGGTCGCTCTGGAAGGGAAT
GAGTTCGCCGATGCTATGAACTGTTATTCCAACGCGATTCGAGTTGAAAC
GGCGTACTTGAAGTTGATCCCTACTGAGAGTGCAAGAGCATCATTGCGAC
TAGGGAGGGCGAAGTGTTATAAAGCACTTGAGGATTACGACATGGCGTTG
GAAGATTACGAAGCAGCGGTGCGGATTGAGCCCGAAAGCGTTGCTGGGCA
CAAAGGATGTGGAAAGTGTTTGTCGGAACTTGAGCAGTTCGAGAAAGCGT
TGGAATCATACAAGATTGCTCACAAGCTGGATCCTGCAGATGATGAAGTG
AGGAATGAAATTGAGTTGATCAGGAACATTCTCCCTGATCCTCTTGAAAG
CAAGAAAGCTGAAATAGCTAAGCTTGGAGTTTTATTAGGTGGCATGAAAC
TACCAGGAAAACCATCATAA

Coding sequence (CDS) from alignment at tig00000860_pilon:1394199..1396268-

>Ggra9041.t1 ID=Ggra9041.t1|Name=Ggra9041.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2070bp|location=Sequence derived from alignment at tig00000860_pilon:1394199..1396268- (Gracilaria gracilis GNS1m male)
ATGATTCCCTCTCGGCGAGGGTTTGAATTTATGCGTGCTGCGCGTGAAAC
GATTGAGAAACCCACGTTACGCCCTATTGTCGAGCGCTCTCATTTTGCTA
CGCTGTCTGCTGGCCATAGCGTTGTGGAGGTTTGTGAGACTCTTGTGCGG
GAACGTCTAGCTGCAGTTGTCATCGTCGACAGCAACAACGTCCTAGAAGG
TATCTTCACATGTCGTGACGTAGCAAGCAGGGTCGTTGCGAAGAATTTGA
ATCCATATTCAACTCTTCTCGGGCAGGTGATGACTAAAAACCCAGATTCT
GCAAGTCCGGACTACACCGTTTTGGAATCTCTTCAGCGTATGCAGGCATG
CGGATTTCGTCACTTGCCTGTTGTGGAAGACAATACTCGCATCGTCATTG
GACTCGTTGACGTCCTTCAGTTAGCGAGCGAAACATTAGTAGGTCTTCAA
TCGGCGGCCGACGACACTACTCGCATAGCACCTCACAAAACAGGCTCACA
CTACAGTCAAGCCGCAGTTCGCAGTCGTGGTGGGATCACCAGTATATTCA
GCAGTTTGTTTTCGAATTCCTATGCCCAAAGCGAATTTGTCCCGGAAGAC
CGTTTTCACCGTATCCCAAACCTTCAACCGCAGCCTCGAAACCTACCGAG
CTATTACTCTCATCCAACGCTTTCGTCTTCCACGAGAAGGCAGTTTAATT
ATCGCCCATCAGATCCTCCCAGCACGCTTTTGTCTAGCTCGCGCGGACGC
ATGGTTCCCCCGGACACACCAGTTGCATCATTCAAATTCAGAGACATAAA
CAATGAATATCGGAGGATAAAGGTCCCAATGAATGTAGGCCCTGGCGCTT
ATGATCAATTTGTCTTGGATGTTCGACGTCGTTTTGCAGGTTCAAGTAGC
GTTGGAGCTATCAAGATCAAATATCTTGACGAGGATAAGGATGAGATTCT
CATATCAAACGACGAGGATTTGGAATCATGCTTTGAGGACTATTTGGACA
TGCGAAGCAAGACAGTGCTTCTAAGAGTTTACGAAGCAGACCACGCGTCA
ACCAGCCAGATACAGTCACCTGTCTCCTCAAACCCAAGTTCGATTATGGG
GAGCCCACACAGGCATTTGAACTCCGTAAGAACAGAGTTGTCATCGAAGT
CTTCTGGACCAGCTTCAGAAGATTACCGAGAAGGCAGTCGCACGACAGCT
ACACTGAAGAGGAGATCATCGCGTCCAGTTTTGCTAACGCCGTCCCAGGT
AAAGGGTGCAGAGGCACACAAGAGAATGCTTGATGGGAACAACGATGAGG
CGATAGCTCTGTATGAAGAGGCGTTGAGGTTAGATCCGGACAACGCCAGA
GCACAAGGTGGCAGAGGAGCGGCACGACTATTTAGTGGGAATTCTGTAGG
AGCTGAAGAGGATTATAGGGCGGCGTTGCAAATGCTTGACGAAGGAAGAG
GTGGGTCTGTTGGCGACCTTACATTCCAGATGTGCATCGTGGGTTTGGTT
GAGTCTTTAATTGACCAAAGAAGATATGAGGAGGCTGTTTCCGCAGCTTC
ACGGATTGATCCCAACTGTGGGAACACTGGATGTAACGACGCTTTCCGGG
ATGAGCTTGATTCTGCTAGTAACGCTGCTCGGGTCGCTCTGGAAGGGAAT
GAGTTCGCCGATGCTATGAACTGTTATTCCAACGCGATTCGAGTTGAAAC
GGCGTACTTGAAGTTGATCCCTACTGAGAGTGCAAGAGCATCATTGCGAC
TAGGGAGGGCGAAGTGTTATAAAGCACTTGAGGATTACGACATGGCGTTG
GAAGATTACGAAGCAGCGGTGCGGATTGAGCCCGAAAGCGTTGCTGGGCA
CAAAGGATGTGGAAAGTGTTTGTCGGAACTTGAGCAGTTCGAGAAAGCGT
TGGAATCATACAAGATTGCTCACAAGCTGGATCCTGCAGATGATGAAGTG
AGGAATGAAATTGAGTTGATCAGGAACATTCTCCCTGATCCTCTTGAAAG
CAAGAAAGCTGAAATAGCTAAGCTTGGAGTTTTATTAGGTGGCATGAAAC
TACCAGGAAAACCATCATAA