Ggra9039.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9039.t1
Unique NameGgra9039.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length74
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:1389388..1390285 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9039Ggra9039Gracilaria gracilis GNS1m malegenetig00000860_pilon 1389388..1390285 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9039.t1Ggra9039.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 1389388..1390285 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9039.t1.start1Ggra9039.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 1389388..1389390 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9039.t1.CDS1Ggra9039.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 1389388..1389419 +
Ggra9039.t1.CDS2Ggra9039.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000860_pilon 1389498..1389612 +
Ggra9039.t1.CDS3Ggra9039.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000860_pilon 1389709..1389733 +
Ggra9039.t1.CDS4Ggra9039.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000860_pilon 1389817..1389831 +
Ggra9039.t1.CDS5Ggra9039.t1.CDS5Gracilaria gracilis GNS1m maleCDStig00000860_pilon 1390251..1390285 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9039.t1.exon1Ggra9039.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 1389388..1389419 +
Ggra9039.t1.exon2Ggra9039.t1.exon2Gracilaria gracilis GNS1m maleexontig00000860_pilon 1389498..1389612 +
Ggra9039.t1.exon3Ggra9039.t1.exon3Gracilaria gracilis GNS1m maleexontig00000860_pilon 1389709..1389733 +
Ggra9039.t1.exon4Ggra9039.t1.exon4Gracilaria gracilis GNS1m maleexontig00000860_pilon 1389817..1389831 +
Ggra9039.t1.exon5Ggra9039.t1.exon5Gracilaria gracilis GNS1m maleexontig00000860_pilon 1390251..1390285 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9039.t1.intron1Ggra9039.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000860_pilon 1389420..1389497 +
Ggra9039.t1.intron2Ggra9039.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000860_pilon 1389613..1389708 +
Ggra9039.t1.intron3Ggra9039.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000860_pilon 1389734..1389816 +
Ggra9039.t1.intron4Ggra9039.t1.intron4Gracilaria gracilis GNS1m maleintrontig00000860_pilon 1389832..1390250 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9039.t1.stop1Ggra9039.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 1390283..1390285 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9039.t1 ID=Ggra9039.t1|Name=Ggra9039.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=74bp
MFDCFIIFGGEEHPTTSDNINVYTLPSTKSGNQINGSSSIASTTRVVTRR
GLRTQDRTRSIASVHGIGQLMSF*
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spliced messenger RNA

>Ggra9039.t1 ID=Ggra9039.t1|Name=Ggra9039.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=222bp|location=Sequence derived from alignment at tig00000860_pilon:1389388..1390285+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTGACTGTTTCATCATTTTCGGAGGGGAAGAACATCCCACAACCAG
TGATAACATAAATGTTTACACTTTGCCTTCGACGAAATCGGGCAATCAGA
TAAATGGAAGCTCTTCAATTGCTTCTACTACAAGGGTAGTGACGAGAAGA
GGACTAAGAACTCAAGATAGAACGCGGTCTATCGCTTCAGTTCATGGCAT
CGGCCAACTCATGTCCTTCTAG
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protein sequence of Ggra9039.t1

>Ggra9039.t1 ID=Ggra9039.t1|Name=Ggra9039.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=74bp
MFDCFIIFGGEEHPTTSDNINVYTLPSTKSGNQINGSSSIASTTRVVTRR
GLRTQDRTRSIASVHGIGQLMSF*
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mRNA from alignment at tig00000860_pilon:1389388..1390285+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9039.t1 ID=Ggra9039.t1|Name=Ggra9039.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=898bp|location=Sequence derived from alignment at tig00000860_pilon:1389388..1390285+ (Gracilaria gracilis GNS1m male)
ATGTTTGACTGTTTCATCATTTTCGGAGGGGAGTCGGTATTACAAACGTT
TCACTTGCCGTACCCTTCTTGAACGATTATAAGGTTAACGACTTTTCTAA
TTATTCTTAGAGAACATCCCACAACCAGTGATAACATAAATGTTTACACT
TTGCCTTCGACGAAATCGGGCAATCAGATAAATGGAAGCTCTTCAATTGC
TTCTACTACAAGGGTAGTGACGAGAGTATGTTAGACAATGATATCTGAGA
GAGAACTAGTGCTCGTAAGGTCTTGTTTTACCTAACTGTTTCTTACTTCC
ATGTTCTATTTTGTACGTCAGAGAGGACTAAGAACTCAAGATAGAAGTCT
TACTTTGTGAAGCGACAAAGTCTTTTTCGTTTGATGGAAATTTGGCTCAC
GTGGCAATACTGCTTTGTGCAAAACAAAGCGCGGTCTATCGCTTGTACGT
TGCTGCAAACCCCACATCGGAACACAAGTTGAATTCATGTAGATGTACGT
GTATTGTGCCATCTACTGTGCCATCTACTGTGCCTAAATTCAGCATTGCA
CGTTGGCACATCATATATATATATCAATTATGATATACAACGGCGATCCG
CATAGCTGAATCGTAATCTTCCAActccatctccgtctctctgtctctct
ctttctctctttgtggactttaattcttctattcctagagttaaaaggaa
atctttgtttacacaaagctctctttcctcaggaaggccaaaaacttctg
tgcccactgtctaatcaactctccatctCGTAATCCTGGAGCGCTTTATA
ACACTTCACCCTCCCCAATCGCAATGCTTGTACGCCGTTTCAACCCGAAT
CGCGTTCGAATAGCAGTTCATGGCATCGGCCAACTCATGTCCTTCTAG
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Coding sequence (CDS) from alignment at tig00000860_pilon:1389388..1390285+

>Ggra9039.t1 ID=Ggra9039.t1|Name=Ggra9039.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=222bp|location=Sequence derived from alignment at tig00000860_pilon:1389388..1390285+ (Gracilaria gracilis GNS1m male)
ATGTTTGACTGTTTCATCATTTTCGGAGGGGAAGAACATCCCACAACCAG
TGATAACATAAATGTTTACACTTTGCCTTCGACGAAATCGGGCAATCAGA
TAAATGGAAGCTCTTCAATTGCTTCTACTACAAGGGTAGTGACGAGAAGA
GGACTAAGAACTCAAGATAGAACGCGGTCTATCGCTTCAGTTCATGGCAT
CGGCCAACTCATGTCCTTCTAG
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