Ggra9038.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9038.t1
Unique NameGgra9038.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length151
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:1388436..1388888 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog935866.JAER01000002_gene1913
PFAMsPolyketide_cyc2
Max annot lvl201174|Actinobacteria
Evalue3.32e-07
EggNOG OGsCOG3427@1|root,COG3427@2|Bacteria,2IK4M@201174|Actinobacteria,4DV38@85009|Propionibacteriales
DescriptionPolyketide cyclase / dehydrase and lipid transport
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9038Ggra9038Gracilaria gracilis GNS1m malegenetig00000860_pilon 1388436..1388888 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9038.t1.stop1Ggra9038.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 1388436..1388438 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9038.t1.CDS1Ggra9038.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 1388436..1388888 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9038.t1.exon1Ggra9038.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 1388436..1388888 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9038.t1.start1Ggra9038.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 1388886..1388888 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9038.t1Ggra9038.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 1388436..1388888 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9038.t1 ID=Ggra9038.t1|Name=Ggra9038.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=151bp
MVKYRASVIVPFARDRVWKLMSDWTNLAKWDINITKSELAASEPVGARGE
GTKFDCAFSLQGSEIEVDYTCMKYEEPDICQFVGLAKLFRSQDTIEFESK
DDGTKITAEFNLTFRGLLSPFSFVMNGAMQKTGPIVMEDIKKFVTEQLDE
*
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spliced messenger RNA

>Ggra9038.t1 ID=Ggra9038.t1|Name=Ggra9038.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=453bp|location=Sequence derived from alignment at tig00000860_pilon:1388436..1388888- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCAAGTACCGAGCCTCAGTCATTGTCCCGTTCGCTCGCGACCGCGT
TTGGAAACTCATGTCCGACTGGACAAACCTCGCCAAATGGGACATTAACA
TCACTAAATCCGAACTCGCAGCCTCAGAACCTGTTGGCGCGCGCGGAGAG
GGGACGAAGTTTGACTGCGCCTTCAGCCTCCAAGGCTCCGAAATTGAAGT
GGACTACACGTGCATGAAGTACGAAGAACCAGACATCTGTCAGTTCGTCG
GCCTCGCAAAACTGTTCAGGTCTCAGGACACTATTGAATTTGAGTCCAAA
GACGACGGGACGAAGATCACAGCGGAATTCAACCTAACCTTCAGAGGACT
GCTGTCGCCATTCTCTTTTGTTATGAATGGTGCCATGCAGAAGACGGGTC
CGATTGTCATGGAAGACATCAAGAAGTTTGTAACGGAGCAGCTCGACGAA
TAG
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protein sequence of Ggra9038.t1

>Ggra9038.t1 ID=Ggra9038.t1|Name=Ggra9038.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=151bp
MVKYRASVIVPFARDRVWKLMSDWTNLAKWDINITKSELAASEPVGARGE
GTKFDCAFSLQGSEIEVDYTCMKYEEPDICQFVGLAKLFRSQDTIEFESK
DDGTKITAEFNLTFRGLLSPFSFVMNGAMQKTGPIVMEDIKKFVTEQLDE
*
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mRNA from alignment at tig00000860_pilon:1388436..1388888-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9038.t1 ID=Ggra9038.t1|Name=Ggra9038.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=453bp|location=Sequence derived from alignment at tig00000860_pilon:1388436..1388888- (Gracilaria gracilis GNS1m male)
ATGGTCAAGTACCGAGCCTCAGTCATTGTCCCGTTCGCTCGCGACCGCGT
TTGGAAACTCATGTCCGACTGGACAAACCTCGCCAAATGGGACATTAACA
TCACTAAATCCGAACTCGCAGCCTCAGAACCTGTTGGCGCGCGCGGAGAG
GGGACGAAGTTTGACTGCGCCTTCAGCCTCCAAGGCTCCGAAATTGAAGT
GGACTACACGTGCATGAAGTACGAAGAACCAGACATCTGTCAGTTCGTCG
GCCTCGCAAAACTGTTCAGGTCTCAGGACACTATTGAATTTGAGTCCAAA
GACGACGGGACGAAGATCACAGCGGAATTCAACCTAACCTTCAGAGGACT
GCTGTCGCCATTCTCTTTTGTTATGAATGGTGCCATGCAGAAGACGGGTC
CGATTGTCATGGAAGACATCAAGAAGTTTGTAACGGAGCAGCTCGACGAA
TAG
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Coding sequence (CDS) from alignment at tig00000860_pilon:1388436..1388888-

>Ggra9038.t1 ID=Ggra9038.t1|Name=Ggra9038.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=453bp|location=Sequence derived from alignment at tig00000860_pilon:1388436..1388888- (Gracilaria gracilis GNS1m male)
ATGGTCAAGTACCGAGCCTCAGTCATTGTCCCGTTCGCTCGCGACCGCGT
TTGGAAACTCATGTCCGACTGGACAAACCTCGCCAAATGGGACATTAACA
TCACTAAATCCGAACTCGCAGCCTCAGAACCTGTTGGCGCGCGCGGAGAG
GGGACGAAGTTTGACTGCGCCTTCAGCCTCCAAGGCTCCGAAATTGAAGT
GGACTACACGTGCATGAAGTACGAAGAACCAGACATCTGTCAGTTCGTCG
GCCTCGCAAAACTGTTCAGGTCTCAGGACACTATTGAATTTGAGTCCAAA
GACGACGGGACGAAGATCACAGCGGAATTCAACCTAACCTTCAGAGGACT
GCTGTCGCCATTCTCTTTTGTTATGAATGGTGCCATGCAGAAGACGGGTC
CGATTGTCATGGAAGACATCAAGAAGTTTGTAACGGAGCAGCTCGACGAA
TAG
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