Ggra9035.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9035.t2
Unique Name	Ggra9035.t2
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	340

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000860_pilon	contig	tig00000860_pilon:1382950..1383969 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	92637.XP_007811713.1
PFAMs	NTP_transferase
Max annot lvl	4751\|Fungi
Evalue	3.97e-32
EggNOG OGs	28NC4@1\|root,2QUXI@2759\|Eukaryota,39UE4@33154\|Opisthokonta,3NXTN@4751\|Fungi,3QSJ8@4890\|Ascomycota,218UM@147550\|Sordariomycetes,3TFGR@5125\|Hypocreales,3G6BG@34397\|Clavicipitaceae
Description	Protein phosphatase 2A A subunit (ISS)
COG category	G

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9035	Ggra9035	Gracilaria gracilis GNS1m male	gene	tig00000860_pilon 1382950..1383969 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9035.t2.start1	Ggra9035.t2.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000860_pilon 1382950..1382952 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9035.t2.CDS1	Ggra9035.t2.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000860_pilon 1382950..1383969 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9035.t2.exon1	Ggra9035.t2.exon1	Gracilaria gracilis GNS1m male	exon	tig00000860_pilon 1382950..1383969 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9035.t2.stop1	Ggra9035.t2.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000860_pilon 1383967..1383969 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9035.t2	Ggra9035.t2	Gracilaria gracilis GNS1m male	polypeptide	tig00000860_pilon 1382950..1383969 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000860_pilon:1382950..1383969+
coding sequence from alignment at tig00000860_pilon:1382950..1383969+

mRNA sequence

>Ggra9035.t2 ID=Ggra9035.t2|Name=Ggra9035.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=340bp
MPLVLKSSSDPSLRAELFFYQNIPAELLPFFPRLLGHYETQENNQTLLTI
VLEYIPATNMSHILTSGRLTKEHIDDLLQTLYKMHLTSSGIIPNESVLKY
NYIPKLYERYTKNKSLYFAHGVTKADIDVLCSYLREHKPLRASVIHGDPV
FTNVLYNGVDRSVIFLDMRGAQGALHTTSGDVYYDLAKVLQSLCGYDHIL
KNAPYELPYHFLMLNSFFDRVSVLYPNVSRWSVVLVTASLFISLMPLHDD
LRARHMYAIMGKNLLRWLHTWRGQVVAEGAFCDLAELTQQVLRHRFFPST
IRSSLSNMNSSSDMDALANLFDAPVSILEAAESRRAKHQ*

spliced messenger RNA

>Ggra9035.t2 ID=Ggra9035.t2|Name=Ggra9035.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1020bp|location=Sequence derived from alignment at tig00000860_pilon:1382950..1383969+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCATTAGTTCTAAAAAGTTCTTCCGACCCATCCCTGCGAGCGGAGCT
TTTCTTTTATCAAAACATCCCTGCCGAGTTGCTCCCTTTCTTTCCCAGGC
TGCTTGGTCACTATGAGACACAGGAAAACAATCAGACCCTCTTGACAATC
GTTTTGGAGTACATTCCCGCCACAAACATGTCACATATTCTGACCAGTGG
ACGTTTAACAAAAGAGCATATCGACGACCTTTTACAAACACTGTACAAAA
TGCACCTCACAAGCAGTGGAATAATCCCCAATGAGTCGGTGCTCAAATAC
AACTACATCCCCAAGCTCTACGAAAGGTACACCAAGAACAAGTCACTCTA
CTTTGCTCACGGAGTAACAAAAGCTGATATTGATGTTCTATGCTCTTACC
TTCGCGAGCACAAACCTCTTCGTGCAAGCGTGATTCATGGAGATCCAGTG
TTTACAAATGTTCTCTACAATGGCGTTGACAGATCAGTAATATTCCTTGA
CATGCGCGGTGCTCAGGGAGCATTGCACACAACTTCCGGCGATGTGTACT
ACGACCTGGCCAAAGTGTTACAATCACTTTGCGGCTACGATCATATCCTC
AAGAACGCCCCCTATGAACTCCCCTATCACTTTTTGATGCTGAACTCTTT
CTTTGATCGGGTATCTGTATTGTATCCCAACGTGTCTCGTTGGAGTGTGG
TTTTAGTCACAGCCAGCCTTTTCATCTCCCTGATGCCTTTGCACGACGAT
CTTCGAGCTCGCCACATGTATGCAATAATGGGAAAGAACCTACTGAGATG
GTTGCATACTTGGAGGGGGCAGGTAGTCGCTGAAGGCGCCTTCTGTGATC
TGGCTGAGTTGACTCAGCAAGTCCTCCGGCATCGATTCTTCCCGTCTACG
ATCCGATCGTCCTTGTCCAATATGAACTCAAGCTCCGATATGGATGCATT
GGCCAATTTGTTCGATGCTCCAGTCTCCATCCTCGAAGCCGCAGAATCAC
GTAGAGCTAAACATCAATGA

protein sequence of Ggra9035.t2

>Ggra9035.t2 ID=Ggra9035.t2|Name=Ggra9035.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=340bp
MPLVLKSSSDPSLRAELFFYQNIPAELLPFFPRLLGHYETQENNQTLLTI
VLEYIPATNMSHILTSGRLTKEHIDDLLQTLYKMHLTSSGIIPNESVLKY
NYIPKLYERYTKNKSLYFAHGVTKADIDVLCSYLREHKPLRASVIHGDPV
FTNVLYNGVDRSVIFLDMRGAQGALHTTSGDVYYDLAKVLQSLCGYDHIL
KNAPYELPYHFLMLNSFFDRVSVLYPNVSRWSVVLVTASLFISLMPLHDD
LRARHMYAIMGKNLLRWLHTWRGQVVAEGAFCDLAELTQQVLRHRFFPST
IRSSLSNMNSSSDMDALANLFDAPVSILEAAESRRAKHQ*

mRNA from alignment at tig00000860_pilon:1382950..1383969+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9035.t2 ID=Ggra9035.t2|Name=Ggra9035.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1020bp|location=Sequence derived from alignment at tig00000860_pilon:1382950..1383969+ (Gracilaria gracilis GNS1m male)
ATGCCATTAGTTCTAAAAAGTTCTTCCGACCCATCCCTGCGAGCGGAGCT
TTTCTTTTATCAAAACATCCCTGCCGAGTTGCTCCCTTTCTTTCCCAGGC
TGCTTGGTCACTATGAGACACAGGAAAACAATCAGACCCTCTTGACAATC
GTTTTGGAGTACATTCCCGCCACAAACATGTCACATATTCTGACCAGTGG
ACGTTTAACAAAAGAGCATATCGACGACCTTTTACAAACACTGTACAAAA
TGCACCTCACAAGCAGTGGAATAATCCCCAATGAGTCGGTGCTCAAATAC
AACTACATCCCCAAGCTCTACGAAAGGTACACCAAGAACAAGTCACTCTA
CTTTGCTCACGGAGTAACAAAAGCTGATATTGATGTTCTATGCTCTTACC
TTCGCGAGCACAAACCTCTTCGTGCAAGCGTGATTCATGGAGATCCAGTG
TTTACAAATGTTCTCTACAATGGCGTTGACAGATCAGTAATATTCCTTGA
CATGCGCGGTGCTCAGGGAGCATTGCACACAACTTCCGGCGATGTGTACT
ACGACCTGGCCAAAGTGTTACAATCACTTTGCGGCTACGATCATATCCTC
AAGAACGCCCCCTATGAACTCCCCTATCACTTTTTGATGCTGAACTCTTT
CTTTGATCGGGTATCTGTATTGTATCCCAACGTGTCTCGTTGGAGTGTGG
TTTTAGTCACAGCCAGCCTTTTCATCTCCCTGATGCCTTTGCACGACGAT
CTTCGAGCTCGCCACATGTATGCAATAATGGGAAAGAACCTACTGAGATG
GTTGCATACTTGGAGGGGGCAGGTAGTCGCTGAAGGCGCCTTCTGTGATC
TGGCTGAGTTGACTCAGCAAGTCCTCCGGCATCGATTCTTCCCGTCTACG
ATCCGATCGTCCTTGTCCAATATGAACTCAAGCTCCGATATGGATGCATT
GGCCAATTTGTTCGATGCTCCAGTCTCCATCCTCGAAGCCGCAGAATCAC
GTAGAGCTAAACATCAATGA

Coding sequence (CDS) from alignment at tig00000860_pilon:1382950..1383969+

>Ggra9035.t2 ID=Ggra9035.t2|Name=Ggra9035.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1020bp|location=Sequence derived from alignment at tig00000860_pilon:1382950..1383969+ (Gracilaria gracilis GNS1m male)
ATGCCATTAGTTCTAAAAAGTTCTTCCGACCCATCCCTGCGAGCGGAGCT
TTTCTTTTATCAAAACATCCCTGCCGAGTTGCTCCCTTTCTTTCCCAGGC
TGCTTGGTCACTATGAGACACAGGAAAACAATCAGACCCTCTTGACAATC
GTTTTGGAGTACATTCCCGCCACAAACATGTCACATATTCTGACCAGTGG
ACGTTTAACAAAAGAGCATATCGACGACCTTTTACAAACACTGTACAAAA
TGCACCTCACAAGCAGTGGAATAATCCCCAATGAGTCGGTGCTCAAATAC
AACTACATCCCCAAGCTCTACGAAAGGTACACCAAGAACAAGTCACTCTA
CTTTGCTCACGGAGTAACAAAAGCTGATATTGATGTTCTATGCTCTTACC
TTCGCGAGCACAAACCTCTTCGTGCAAGCGTGATTCATGGAGATCCAGTG
TTTACAAATGTTCTCTACAATGGCGTTGACAGATCAGTAATATTCCTTGA
CATGCGCGGTGCTCAGGGAGCATTGCACACAACTTCCGGCGATGTGTACT
ACGACCTGGCCAAAGTGTTACAATCACTTTGCGGCTACGATCATATCCTC
AAGAACGCCCCCTATGAACTCCCCTATCACTTTTTGATGCTGAACTCTTT
CTTTGATCGGGTATCTGTATTGTATCCCAACGTGTCTCGTTGGAGTGTGG
TTTTAGTCACAGCCAGCCTTTTCATCTCCCTGATGCCTTTGCACGACGAT
CTTCGAGCTCGCCACATGTATGCAATAATGGGAAAGAACCTACTGAGATG
GTTGCATACTTGGAGGGGGCAGGTAGTCGCTGAAGGCGCCTTCTGTGATC
TGGCTGAGTTGACTCAGCAAGTCCTCCGGCATCGATTCTTCCCGTCTACG
ATCCGATCGTCCTTGTCCAATATGAACTCAAGCTCCGATATGGATGCATT
GGCCAATTTGTTCGATGCTCCAGTCTCCATCCTCGAAGCCGCAGAATCAC
GTAGAGCTAAACATCAATGA