Ggra9035.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9035.t1
Unique NameGgra9035.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length257
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:1383199..1383969 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog223192.XP_007914920.1
PFAMsNTP_transferase
Max annot lvl4751|Fungi
Evalue1.67e-20
EggNOG OGs28NC4@1|root,2QUXI@2759|Eukaryota,39UE4@33154|Opisthokonta,3NXTN@4751|Fungi,3QSJ8@4890|Ascomycota,218UM@147550|Sordariomycetes
Descriptionphosphatase
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9035Ggra9035Gracilaria gracilis GNS1m malegenetig00000860_pilon 1382950..1383969 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9035.t1.start1Ggra9035.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 1383199..1383201 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9035.t1.CDS1Ggra9035.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 1383199..1383969 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9035.t1.exon1Ggra9035.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 1383199..1383969 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9035.t1.stop1Ggra9035.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 1383967..1383969 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9035.t1Ggra9035.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 1383199..1383969 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9035.t1 ID=Ggra9035.t1|Name=Ggra9035.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=257bp
MHLTSSGIIPNESVLKYNYIPKLYERYTKNKSLYFAHGVTKADIDVLCSY
LREHKPLRASVIHGDPVFTNVLYNGVDRSVIFLDMRGAQGALHTTSGDVY
YDLAKVLQSLCGYDHILKNAPYELPYHFLMLNSFFDRVSVLYPNVSRWSV
VLVTASLFISLMPLHDDLRARHMYAIMGKNLLRWLHTWRGQVVAEGAFCD
LAELTQQVLRHRFFPSTIRSSLSNMNSSSDMDALANLFDAPVSILEAAES
RRAKHQ*
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spliced messenger RNA

>Ggra9035.t1 ID=Ggra9035.t1|Name=Ggra9035.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=771bp|location=Sequence derived from alignment at tig00000860_pilon:1383199..1383969+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACCTCACAAGCAGTGGAATAATCCCCAATGAGTCGGTGCTCAAATA
CAACTACATCCCCAAGCTCTACGAAAGGTACACCAAGAACAAGTCACTCT
ACTTTGCTCACGGAGTAACAAAAGCTGATATTGATGTTCTATGCTCTTAC
CTTCGCGAGCACAAACCTCTTCGTGCAAGCGTGATTCATGGAGATCCAGT
GTTTACAAATGTTCTCTACAATGGCGTTGACAGATCAGTAATATTCCTTG
ACATGCGCGGTGCTCAGGGAGCATTGCACACAACTTCCGGCGATGTGTAC
TACGACCTGGCCAAAGTGTTACAATCACTTTGCGGCTACGATCATATCCT
CAAGAACGCCCCCTATGAACTCCCCTATCACTTTTTGATGCTGAACTCTT
TCTTTGATCGGGTATCTGTATTGTATCCCAACGTGTCTCGTTGGAGTGTG
GTTTTAGTCACAGCCAGCCTTTTCATCTCCCTGATGCCTTTGCACGACGA
TCTTCGAGCTCGCCACATGTATGCAATAATGGGAAAGAACCTACTGAGAT
GGTTGCATACTTGGAGGGGGCAGGTAGTCGCTGAAGGCGCCTTCTGTGAT
CTGGCTGAGTTGACTCAGCAAGTCCTCCGGCATCGATTCTTCCCGTCTAC
GATCCGATCGTCCTTGTCCAATATGAACTCAAGCTCCGATATGGATGCAT
TGGCCAATTTGTTCGATGCTCCAGTCTCCATCCTCGAAGCCGCAGAATCA
CGTAGAGCTAAACATCAATGA
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protein sequence of Ggra9035.t1

>Ggra9035.t1 ID=Ggra9035.t1|Name=Ggra9035.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=257bp
MHLTSSGIIPNESVLKYNYIPKLYERYTKNKSLYFAHGVTKADIDVLCSY
LREHKPLRASVIHGDPVFTNVLYNGVDRSVIFLDMRGAQGALHTTSGDVY
YDLAKVLQSLCGYDHILKNAPYELPYHFLMLNSFFDRVSVLYPNVSRWSV
VLVTASLFISLMPLHDDLRARHMYAIMGKNLLRWLHTWRGQVVAEGAFCD
LAELTQQVLRHRFFPSTIRSSLSNMNSSSDMDALANLFDAPVSILEAAES
RRAKHQ*
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mRNA from alignment at tig00000860_pilon:1383199..1383969+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9035.t1 ID=Ggra9035.t1|Name=Ggra9035.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=771bp|location=Sequence derived from alignment at tig00000860_pilon:1383199..1383969+ (Gracilaria gracilis GNS1m male)
ATGCACCTCACAAGCAGTGGAATAATCCCCAATGAGTCGGTGCTCAAATA
CAACTACATCCCCAAGCTCTACGAAAGGTACACCAAGAACAAGTCACTCT
ACTTTGCTCACGGAGTAACAAAAGCTGATATTGATGTTCTATGCTCTTAC
CTTCGCGAGCACAAACCTCTTCGTGCAAGCGTGATTCATGGAGATCCAGT
GTTTACAAATGTTCTCTACAATGGCGTTGACAGATCAGTAATATTCCTTG
ACATGCGCGGTGCTCAGGGAGCATTGCACACAACTTCCGGCGATGTGTAC
TACGACCTGGCCAAAGTGTTACAATCACTTTGCGGCTACGATCATATCCT
CAAGAACGCCCCCTATGAACTCCCCTATCACTTTTTGATGCTGAACTCTT
TCTTTGATCGGGTATCTGTATTGTATCCCAACGTGTCTCGTTGGAGTGTG
GTTTTAGTCACAGCCAGCCTTTTCATCTCCCTGATGCCTTTGCACGACGA
TCTTCGAGCTCGCCACATGTATGCAATAATGGGAAAGAACCTACTGAGAT
GGTTGCATACTTGGAGGGGGCAGGTAGTCGCTGAAGGCGCCTTCTGTGAT
CTGGCTGAGTTGACTCAGCAAGTCCTCCGGCATCGATTCTTCCCGTCTAC
GATCCGATCGTCCTTGTCCAATATGAACTCAAGCTCCGATATGGATGCAT
TGGCCAATTTGTTCGATGCTCCAGTCTCCATCCTCGAAGCCGCAGAATCA
CGTAGAGCTAAACATCAATGA
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Coding sequence (CDS) from alignment at tig00000860_pilon:1383199..1383969+

>Ggra9035.t1 ID=Ggra9035.t1|Name=Ggra9035.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=771bp|location=Sequence derived from alignment at tig00000860_pilon:1383199..1383969+ (Gracilaria gracilis GNS1m male)
ATGCACCTCACAAGCAGTGGAATAATCCCCAATGAGTCGGTGCTCAAATA
CAACTACATCCCCAAGCTCTACGAAAGGTACACCAAGAACAAGTCACTCT
ACTTTGCTCACGGAGTAACAAAAGCTGATATTGATGTTCTATGCTCTTAC
CTTCGCGAGCACAAACCTCTTCGTGCAAGCGTGATTCATGGAGATCCAGT
GTTTACAAATGTTCTCTACAATGGCGTTGACAGATCAGTAATATTCCTTG
ACATGCGCGGTGCTCAGGGAGCATTGCACACAACTTCCGGCGATGTGTAC
TACGACCTGGCCAAAGTGTTACAATCACTTTGCGGCTACGATCATATCCT
CAAGAACGCCCCCTATGAACTCCCCTATCACTTTTTGATGCTGAACTCTT
TCTTTGATCGGGTATCTGTATTGTATCCCAACGTGTCTCGTTGGAGTGTG
GTTTTAGTCACAGCCAGCCTTTTCATCTCCCTGATGCCTTTGCACGACGA
TCTTCGAGCTCGCCACATGTATGCAATAATGGGAAAGAACCTACTGAGAT
GGTTGCATACTTGGAGGGGGCAGGTAGTCGCTGAAGGCGCCTTCTGTGAT
CTGGCTGAGTTGACTCAGCAAGTCCTCCGGCATCGATTCTTCCCGTCTAC
GATCCGATCGTCCTTGTCCAATATGAACTCAAGCTCCGATATGGATGCAT
TGGCCAATTTGTTCGATGCTCCAGTCTCCATCCTCGAAGCCGCAGAATCA
CGTAGAGCTAAACATCAATGA
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