Ggra9032.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9032.t1
Unique NameGgra9032.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length174
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:1379015..1379601 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog34349.G7E911
Preferred nameFMP32
PFAMsDUF1640
Max annot lvl4751|Fungi
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006839,GO:0006851,GO:0006996,GO:0007005,GO:0008150,GO:0008535,GO:0009987,GO:0016020,GO:0016021,GO:0016043,GO:0017004,GO:0019866,GO:0022607,GO:0030001,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031304,GO:0031305,GO:0031966,GO:0031967,GO:0031975,GO:0032592,GO:0033108,GO:0033617,GO:0034220,GO:0034622,GO:0036444,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0060401,GO:0065003,GO:0070509,GO:0070588,GO:0070838,GO:0071840,GO:0072511,GO:0098573,GO:0098655,GO:0098660,GO:0098662,GO:1990542
Evalue1.24e-05
EggNOG OGsKOG3156@1|root,KOG3156@2759|Eukaryota,39SGQ@33154|Opisthokonta,3P09U@4751|Fungi,3V0CZ@5204|Basidiomycota,2YE21@29000|Pucciniomycotina
DescriptionProtein of unknown function (DUF1640)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9032Ggra9032Gracilaria gracilis GNS1m malegenetig00000860_pilon 1379015..1379601 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9032.t1Ggra9032.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 1379015..1379601 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9032.t1.start1Ggra9032.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 1379015..1379017 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9032.t1.CDS1Ggra9032.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 1379015..1379092 +
Ggra9032.t1.CDS2Ggra9032.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000860_pilon 1379158..1379601 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9032.t1.exon1Ggra9032.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 1379015..1379092 +
Ggra9032.t1.exon2Ggra9032.t1.exon2Gracilaria gracilis GNS1m maleexontig00000860_pilon 1379158..1379601 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9032.t1.intron1Ggra9032.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000860_pilon 1379093..1379157 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9032.t1.stop1Ggra9032.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 1379599..1379601 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9032.t1 ID=Ggra9032.t1|Name=Ggra9032.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=174bp
MSARITPELERAIFTETPLIFDTHSMVAYLRQAGFSHAQSEAVTDAMVRV
SQHANRHHQNQMVTKNEFVSLRSELSILEKADFALLKTDINAIEKRMETS
VAEIYTAVERVENRVIKWVIAVAGAIGLAIIRLTTTSSGGANKGAGHPPA
SNVDHSLAVPRIVRGDDKRVLVT*
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spliced messenger RNA

>Ggra9032.t1 ID=Ggra9032.t1|Name=Ggra9032.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=522bp|location=Sequence derived from alignment at tig00000860_pilon:1379015..1379601+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGCGCGGATTACGCCCGAGTTGGAACGCGCCATCTTTACGGAGAC
GCCGCTCATCTTCGACACGCACAGCATGGTGGCGTACTTGAGACAGGCCG
GCTTCTCGCATGCGCAGAGCGAGGCCGTTACGGACGCGATGGTGCGCGTG
TCGCAGCACGCCAATCGACACCATCAGAACCAGATGGTCACCAAGAACGA
GTTTGTGAGCCTGCGCTCCGAGCTCAGCATCTTGGAGAAGGCCGACTTTG
CGCTGCTGAAGACCGATATCAACGCCATTGAAAAGCGCATGGAGACGTCC
GTCGCCGAGATTTACACCGCCGTGGAGAGGGTGGAGAACCGCGTCATCAA
GTGGGTCATTGCCGTGGCCGGCGCCATTGGATTGGCCATCATTCGCCTCA
CTACTACTTCTTCCGGCGGTGCTAacaagggcgctggtcaccccccagcg
tcgaacgtggaccattcgcttgctgttccgcgcattgtacgtggcgacga
taagcgcgttttggtcacttga
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protein sequence of Ggra9032.t1

>Ggra9032.t1 ID=Ggra9032.t1|Name=Ggra9032.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=174bp
MSARITPELERAIFTETPLIFDTHSMVAYLRQAGFSHAQSEAVTDAMVRV
SQHANRHHQNQMVTKNEFVSLRSELSILEKADFALLKTDINAIEKRMETS
VAEIYTAVERVENRVIKWVIAVAGAIGLAIIRLTTTSSGGANKGAGHPPA
SNVDHSLAVPRIVRGDDKRVLVT*
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mRNA from alignment at tig00000860_pilon:1379015..1379601+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9032.t1 ID=Ggra9032.t1|Name=Ggra9032.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=587bp|location=Sequence derived from alignment at tig00000860_pilon:1379015..1379601+ (Gracilaria gracilis GNS1m male)
ATGTCGGCGCGGATTACGCCCGAGTTGGAACGCGCCATCTTTACGGAGAC
GCCGCTCATCTTCGACACGCACAGCATGGTACGGCGGCGCATTTCGCCCT
TCGCGCGCTTCGTTCTCGCTCACTGACCCAATGCTGTGTTCAGGTGGCGT
ACTTGAGACAGGCCGGCTTCTCGCATGCGCAGAGCGAGGCCGTTACGGAC
GCGATGGTGCGCGTGTCGCAGCACGCCAATCGACACCATCAGAACCAGAT
GGTCACCAAGAACGAGTTTGTGAGCCTGCGCTCCGAGCTCAGCATCTTGG
AGAAGGCCGACTTTGCGCTGCTGAAGACCGATATCAACGCCATTGAAAAG
CGCATGGAGACGTCCGTCGCCGAGATTTACACCGCCGTGGAGAGGGTGGA
GAACCGCGTCATCAAGTGGGTCATTGCCGTGGCCGGCGCCATTGGATTGG
CCATCATTCGCCTCACTACTACTTCTTCCGGCGGTGCTAacaagggcgct
ggtcaccccccagcgtcgaacgtggaccattcgcttgctgttccgcgcat
tgtacgtggcgacgataagcgcgttttggtcacttga
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Coding sequence (CDS) from alignment at tig00000860_pilon:1379015..1379601+

>Ggra9032.t1 ID=Ggra9032.t1|Name=Ggra9032.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=522bp|location=Sequence derived from alignment at tig00000860_pilon:1379015..1379601+ (Gracilaria gracilis GNS1m male)
ATGTCGGCGCGGATTACGCCCGAGTTGGAACGCGCCATCTTTACGGAGAC
GCCGCTCATCTTCGACACGCACAGCATGGTGGCGTACTTGAGACAGGCCG
GCTTCTCGCATGCGCAGAGCGAGGCCGTTACGGACGCGATGGTGCGCGTG
TCGCAGCACGCCAATCGACACCATCAGAACCAGATGGTCACCAAGAACGA
GTTTGTGAGCCTGCGCTCCGAGCTCAGCATCTTGGAGAAGGCCGACTTTG
CGCTGCTGAAGACCGATATCAACGCCATTGAAAAGCGCATGGAGACGTCC
GTCGCCGAGATTTACACCGCCGTGGAGAGGGTGGAGAACCGCGTCATCAA
GTGGGTCATTGCCGTGGCCGGCGCCATTGGATTGGCCATCATTCGCCTCA
CTACTACTTCTTCCGGCGGTGCTAacaagggcgctggtcaccccccagcg
tcgaacgtggaccattcgcttgctgttccgcgcattgtacgtggcgacga
taagcgcgttttggtcacttga
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