Ggra9031.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9031.t1
Unique NameGgra9031.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length152
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:1331191..1331646 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4096.XP_009781584.1
Max annot lvl4096.XP_009781584.1|-
Evalue0.000534
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3808W@33090|Viridiplantae,3GPYJ@35493|Streptophyta,44MZZ@71274|asterids
DescriptionIntegrase core domain containing protein
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9031Ggra9031Gracilaria gracilis GNS1m malegenetig00000860_pilon 1331191..1331646 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9031.t1.start1Ggra9031.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 1331191..1331193 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9031.t1.CDS1Ggra9031.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 1331191..1331646 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9031.t1.exon1Ggra9031.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 1331191..1331646 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9031.t1.stop1Ggra9031.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 1331644..1331646 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9031.t1Ggra9031.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 1331191..1331646 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9031.t1 ID=Ggra9031.t1|Name=Ggra9031.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=152bp
MLTLTPSPTRRRVTVADGTAATVLGCVREVPVAFGENGVPVDFLVVQNTP
FNVIIGCPTLEILRARLDLGRQQVHLTVGDEDVVLELSNEPPRVDGARTD
SEDSTSPDESAEEEYPQDSSSPSSDEESSEDSGLVLAIVDEETYEPDLEN
L*
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spliced messenger RNA

>Ggra9031.t1 ID=Ggra9031.t1|Name=Ggra9031.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=456bp|location=Sequence derived from alignment at tig00000860_pilon:1331191..1331646+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGACCCTGACTCCGTCCCCTACTAGGAGGCGAGTCACCGTCGCTGA
TGGAACCGCAGCCACAGTGTTGGGCTGTGTCAGAGAAGTACCGGTTGCCT
TCGGAGAGAATGGAGTCCCTGTTGACTTCCTTGTCGTACAGAACACTCCG
TTTAACGTCATCATTGGATGTCCAACGCTGGAGATTCTCCGTGCGCGACT
AGACCTTGGTCGTCAACAGGTTCACCTGACTGTTGGGGACGAAGACGTTG
TCCTGGAACTGTCGAATGAACCGCCGAGAGTTGACGGAGCTCGCACGGAT
AGCGAGGACTCCACGTCGCCCGACGAGTCTGCGGAAGAAGAATACCCGCA
GGACAGTTCCTCCCCGTCTTCTGACGAAGAATCAAGTGAGGATTCCGGGC
TGGTTCTCGCCATTGTGGACGAGGAAACGTACGAACCGGACCTGGAGAAC
CTGTAA
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protein sequence of Ggra9031.t1

>Ggra9031.t1 ID=Ggra9031.t1|Name=Ggra9031.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=152bp
MLTLTPSPTRRRVTVADGTAATVLGCVREVPVAFGENGVPVDFLVVQNTP
FNVIIGCPTLEILRARLDLGRQQVHLTVGDEDVVLELSNEPPRVDGARTD
SEDSTSPDESAEEEYPQDSSSPSSDEESSEDSGLVLAIVDEETYEPDLEN
L*
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mRNA from alignment at tig00000860_pilon:1331191..1331646+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9031.t1 ID=Ggra9031.t1|Name=Ggra9031.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=456bp|location=Sequence derived from alignment at tig00000860_pilon:1331191..1331646+ (Gracilaria gracilis GNS1m male)
ATGTTGACCCTGACTCCGTCCCCTACTAGGAGGCGAGTCACCGTCGCTGA
TGGAACCGCAGCCACAGTGTTGGGCTGTGTCAGAGAAGTACCGGTTGCCT
TCGGAGAGAATGGAGTCCCTGTTGACTTCCTTGTCGTACAGAACACTCCG
TTTAACGTCATCATTGGATGTCCAACGCTGGAGATTCTCCGTGCGCGACT
AGACCTTGGTCGTCAACAGGTTCACCTGACTGTTGGGGACGAAGACGTTG
TCCTGGAACTGTCGAATGAACCGCCGAGAGTTGACGGAGCTCGCACGGAT
AGCGAGGACTCCACGTCGCCCGACGAGTCTGCGGAAGAAGAATACCCGCA
GGACAGTTCCTCCCCGTCTTCTGACGAAGAATCAAGTGAGGATTCCGGGC
TGGTTCTCGCCATTGTGGACGAGGAAACGTACGAACCGGACCTGGAGAAC
CTGTAA
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Coding sequence (CDS) from alignment at tig00000860_pilon:1331191..1331646+

>Ggra9031.t1 ID=Ggra9031.t1|Name=Ggra9031.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=456bp|location=Sequence derived from alignment at tig00000860_pilon:1331191..1331646+ (Gracilaria gracilis GNS1m male)
ATGTTGACCCTGACTCCGTCCCCTACTAGGAGGCGAGTCACCGTCGCTGA
TGGAACCGCAGCCACAGTGTTGGGCTGTGTCAGAGAAGTACCGGTTGCCT
TCGGAGAGAATGGAGTCCCTGTTGACTTCCTTGTCGTACAGAACACTCCG
TTTAACGTCATCATTGGATGTCCAACGCTGGAGATTCTCCGTGCGCGACT
AGACCTTGGTCGTCAACAGGTTCACCTGACTGTTGGGGACGAAGACGTTG
TCCTGGAACTGTCGAATGAACCGCCGAGAGTTGACGGAGCTCGCACGGAT
AGCGAGGACTCCACGTCGCCCGACGAGTCTGCGGAAGAAGAATACCCGCA
GGACAGTTCCTCCCCGTCTTCTGACGAAGAATCAAGTGAGGATTCCGGGC
TGGTTCTCGCCATTGTGGACGAGGAAACGTACGAACCGGACCTGGAGAAC
CTGTAA
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