Ggra903.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra903.t1
Unique NameGgra903.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length279
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000049_piloncontigtig00000049_pilon:250721..251557 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra903Ggra903Gracilaria gracilis GNS1m malegenetig00000049_pilon 250721..251557 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra903.t1.start1Ggra903.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000049_pilon 250721..250723 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra903.t1.CDS1Ggra903.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000049_pilon 250721..251557 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra903.t1.exon1Ggra903.t1.exon1Gracilaria gracilis GNS1m maleexontig00000049_pilon 250721..251557 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra903.t1.stop1Ggra903.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000049_pilon 251555..251557 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra903.t1Ggra903.t1Gracilaria gracilis GNS1m malepolypeptidetig00000049_pilon 250721..251557 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra903.t1 ID=Ggra903.t1|Name=Ggra903.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=279bp
MNNIGDHGDHGAAHTSYLQLGEGFTKSRDLLRADGELLENGTLNTRDGCL
LTSDNVLAQLKQRKDARAAAEAAKVASSAETEERRARREREALERVHDQA
ARAEVAKMRHKLREEESAGRESDWDARAAVAAQKRLEREVERARKAQERA
RKSSEGKQSHLQKAAEKAAEQARLSEKHERHVVWLRCRPDQQGLLVRSRS
AMRAAARLRAGFERGEHLSANKVCGQNKILCFYFRPRAWLRVGSQAATSR
RQSFTRSVVLRDDASFIFCAVLVPLVLF*
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spliced messenger RNA

>Ggra903.t1 ID=Ggra903.t1|Name=Ggra903.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=837bp|location=Sequence derived from alignment at tig00000049_pilon:250721..251557+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACAACATCGGTGACCATGGAGATCATGGCGCTGCACACACCTCGTA
CCTGCAGCTGGGGGAGGGGTTTACCAAATCCAGAGACCTTTTGAGGGCCG
ACGGGGAGCTACTGGAGAATGGTACGCTCAATACTAGAGATGGTTGTCTC
TTGACATCGGATAATGTGCTTGCGCAATTAAAACAGCGCAAGGACGCAAG
GGCTGCCGCGGAAGCCGCGAAGGTTGCAAGTTCAGCTGAAACAGAAGAAC
GACGGGCTCGAAGAGAGAGGGAAGCTCTCGAGCGTGTTCATGATCAGGCT
GCTCGTGCCGAAGTGGCCAAGATGCGCCACAAGCTGCGAGAAGAAGAGAG
TGCAGGACGAGAGTCGGATTGGGATGCAAGGGCCGCGGTTGCAGCACAAA
AACGTTTGGAACGTGAAGTAGAGCGCGCTCGCAAGGCGCAAGAACGTGCG
AGAAAGTCCAGCGAGGGCAAACAGAGCCATCTGCAGAAGGCAGCCGAGAA
GGCGGCCGAGCAAGCGCGTCTGAGCGAAAAGCATGAGCGTCATGTTGTTT
GGCTGCGATGCCGCCCCGACCAGCAGGGGCTTCTTGTCCGATCGAGGTCC
GCTATGAGAGCCGCGGCGAGGCTACGAGCGGGATTCGAACGCGGGGAGCA
CTTAAGTGCCAACAAAGTATGCGGTCAAAACAAAATTTTGTGTTTTTATT
TTCGTCCCAGGGCCTGGTTGAGAGTGGGTTCTCAAGCGGCTACCAGCAGG
CGACAGTCATTTACACGTAGCGTCGTGCTGAGAGATGATGCATCTTTCAT
ATTCTGTGCTGTTTTGGTACCGTTGGTACTCTTCTGA
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protein sequence of Ggra903.t1

>Ggra903.t1 ID=Ggra903.t1|Name=Ggra903.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=279bp
MNNIGDHGDHGAAHTSYLQLGEGFTKSRDLLRADGELLENGTLNTRDGCL
LTSDNVLAQLKQRKDARAAAEAAKVASSAETEERRARREREALERVHDQA
ARAEVAKMRHKLREEESAGRESDWDARAAVAAQKRLEREVERARKAQERA
RKSSEGKQSHLQKAAEKAAEQARLSEKHERHVVWLRCRPDQQGLLVRSRS
AMRAAARLRAGFERGEHLSANKVCGQNKILCFYFRPRAWLRVGSQAATSR
RQSFTRSVVLRDDASFIFCAVLVPLVLF*
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mRNA from alignment at tig00000049_pilon:250721..251557+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra903.t1 ID=Ggra903.t1|Name=Ggra903.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=837bp|location=Sequence derived from alignment at tig00000049_pilon:250721..251557+ (Gracilaria gracilis GNS1m male)
ATGAACAACATCGGTGACCATGGAGATCATGGCGCTGCACACACCTCGTA
CCTGCAGCTGGGGGAGGGGTTTACCAAATCCAGAGACCTTTTGAGGGCCG
ACGGGGAGCTACTGGAGAATGGTACGCTCAATACTAGAGATGGTTGTCTC
TTGACATCGGATAATGTGCTTGCGCAATTAAAACAGCGCAAGGACGCAAG
GGCTGCCGCGGAAGCCGCGAAGGTTGCAAGTTCAGCTGAAACAGAAGAAC
GACGGGCTCGAAGAGAGAGGGAAGCTCTCGAGCGTGTTCATGATCAGGCT
GCTCGTGCCGAAGTGGCCAAGATGCGCCACAAGCTGCGAGAAGAAGAGAG
TGCAGGACGAGAGTCGGATTGGGATGCAAGGGCCGCGGTTGCAGCACAAA
AACGTTTGGAACGTGAAGTAGAGCGCGCTCGCAAGGCGCAAGAACGTGCG
AGAAAGTCCAGCGAGGGCAAACAGAGCCATCTGCAGAAGGCAGCCGAGAA
GGCGGCCGAGCAAGCGCGTCTGAGCGAAAAGCATGAGCGTCATGTTGTTT
GGCTGCGATGCCGCCCCGACCAGCAGGGGCTTCTTGTCCGATCGAGGTCC
GCTATGAGAGCCGCGGCGAGGCTACGAGCGGGATTCGAACGCGGGGAGCA
CTTAAGTGCCAACAAAGTATGCGGTCAAAACAAAATTTTGTGTTTTTATT
TTCGTCCCAGGGCCTGGTTGAGAGTGGGTTCTCAAGCGGCTACCAGCAGG
CGACAGTCATTTACACGTAGCGTCGTGCTGAGAGATGATGCATCTTTCAT
ATTCTGTGCTGTTTTGGTACCGTTGGTACTCTTCTGA
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Coding sequence (CDS) from alignment at tig00000049_pilon:250721..251557+

>Ggra903.t1 ID=Ggra903.t1|Name=Ggra903.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=837bp|location=Sequence derived from alignment at tig00000049_pilon:250721..251557+ (Gracilaria gracilis GNS1m male)
ATGAACAACATCGGTGACCATGGAGATCATGGCGCTGCACACACCTCGTA
CCTGCAGCTGGGGGAGGGGTTTACCAAATCCAGAGACCTTTTGAGGGCCG
ACGGGGAGCTACTGGAGAATGGTACGCTCAATACTAGAGATGGTTGTCTC
TTGACATCGGATAATGTGCTTGCGCAATTAAAACAGCGCAAGGACGCAAG
GGCTGCCGCGGAAGCCGCGAAGGTTGCAAGTTCAGCTGAAACAGAAGAAC
GACGGGCTCGAAGAGAGAGGGAAGCTCTCGAGCGTGTTCATGATCAGGCT
GCTCGTGCCGAAGTGGCCAAGATGCGCCACAAGCTGCGAGAAGAAGAGAG
TGCAGGACGAGAGTCGGATTGGGATGCAAGGGCCGCGGTTGCAGCACAAA
AACGTTTGGAACGTGAAGTAGAGCGCGCTCGCAAGGCGCAAGAACGTGCG
AGAAAGTCCAGCGAGGGCAAACAGAGCCATCTGCAGAAGGCAGCCGAGAA
GGCGGCCGAGCAAGCGCGTCTGAGCGAAAAGCATGAGCGTCATGTTGTTT
GGCTGCGATGCCGCCCCGACCAGCAGGGGCTTCTTGTCCGATCGAGGTCC
GCTATGAGAGCCGCGGCGAGGCTACGAGCGGGATTCGAACGCGGGGAGCA
CTTAAGTGCCAACAAAGTATGCGGTCAAAACAAAATTTTGTGTTTTTATT
TTCGTCCCAGGGCCTGGTTGAGAGTGGGTTCTCAAGCGGCTACCAGCAGG
CGACAGTCATTTACACGTAGCGTCGTGCTGAGAGATGATGCATCTTTCAT
ATTCTGTGCTGTTTTGGTACCGTTGGTACTCTTCTGA
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