Ggra9026.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9026.t1
Unique NameGgra9026.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length271
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:1282321..1283199 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704541.1
PFAMsPEP_mutase
Max annot lvl2759|Eukaryota
KEGG rclassRC00286,RC00287
KEGG koko:K03417
KEGG ReactionR00409
KEGG Pathwayko00640,map00640
Evalue1.65e-103
EggNOG OGsCOG2513@1|root,KOG1260@2759|Eukaryota
EC4.1.3.30
Descriptionisocitrate lyase activity
COG categoryG
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9026Ggra9026Gracilaria gracilis GNS1m malegenetig00000860_pilon 1282321..1283199 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9026.t1Ggra9026.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 1282321..1283199 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9026.t1.stop1Ggra9026.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 1282321..1282323 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9026.t1.CDS1Ggra9026.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 1282321..1282837 -
Ggra9026.t1.CDS2Ggra9026.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000860_pilon 1282904..1283199 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9026.t1.exon1Ggra9026.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 1282321..1282837 -
Ggra9026.t1.exon2Ggra9026.t1.exon2Gracilaria gracilis GNS1m maleexontig00000860_pilon 1282904..1283199 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9026.t1.intron1Ggra9026.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000860_pilon 1282838..1282903 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9026.t1.start1Ggra9026.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 1283197..1283199 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9026.t1 ID=Ggra9026.t1|Name=Ggra9026.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=271bp
MPCCGDGLSAKLIQRADFDLTFMSGFSTAGCKGLPDTGLLSYKEMLENVA
EVSDVIDIPLIADADTGFGNAVNVRRTVIGFAKAGASGLLIEDQVNPKRC
GHTKGKEVVDRNEALRRIRAACDARDEIADGDGGPVIIARTDAARSSFEE
ALIRAHLFHELGADMTFVEAPSCRKQMETYCRSVPGLKLANMLEMGDTPI
LPPQELFDIGYSIAAYPLTLLSASVRAQEEALLRLREGVPERVRPLLKSF
AELRDVVGFPSYYDTEDKYK*
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spliced messenger RNA

>Ggra9026.t1 ID=Ggra9026.t1|Name=Ggra9026.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=813bp|location=Sequence derived from alignment at tig00000860_pilon:1282321..1283199- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCATGTTGCGGTGACGGACTCTCAGCCAAGCTTATCCAACGAGCAGA
CTTTGACCTCACATTTATGTCTGGCTTCTCAACGGCCGGTTGCAAGGGGC
TTCCCGATACAGGTCTCCTCAGCTACAAAGAAATGTTAGAAAACGTAGCC
GAGGTGTCCGATGTTATTGATATACCGCTTATTGCTGACGCGGATACTGG
CTTTGGAAATGCGGTCAACGTGCGCCGTACAGTTATTGGTTTCGCCAAGG
CTGGAGCTTCAGGTCTACTCATTGAGGATCAGGTTAATCCGAAAAGATGC
GGTCATACCAAAGGAAAGGAAGTTGTTGACAGGAACGAAGCCTTGCGTCG
AATCCGTGCCGCCTGTGATGCACGAGATGAAATTGCAGACGGTGATGGAG
GCCCAGTTATTATCGCTCGAACAGATGCCGCGCGCTCCAGCTTTGAAGAA
GCACTAATTCGTGCTCACCTTTTCCACGAGCTTGGCGCTGATATGACCTT
TGTTGAAGCACCCAGTTGTAGAAAGCAAATGGAAACATACTGTCGGTCAG
TTCCGGGTCTAAAGCTTGCCAACATGCTTGAAATGGGAGACACTCCAATA
TTGCCTCCACAAGAACTGTTTGATATTGGTTATTCAATTGCTGCCTACCC
TCTCACACTGCTGAGTGCTTCGGTCAGAGCTCAAGAGGAGGCGCTTTTAA
GGCTACGGGAAGGCGTACCAGAAAGGGTGCGACCACTGCTCAAGAGCTTT
GCGGAGCTACGAGATGTCGTCGGATTTCCCAGTTACTACGATACAGAAGA
CAAGTATAAATGA
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protein sequence of Ggra9026.t1

>Ggra9026.t1 ID=Ggra9026.t1|Name=Ggra9026.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=271bp
MPCCGDGLSAKLIQRADFDLTFMSGFSTAGCKGLPDTGLLSYKEMLENVA
EVSDVIDIPLIADADTGFGNAVNVRRTVIGFAKAGASGLLIEDQVNPKRC
GHTKGKEVVDRNEALRRIRAACDARDEIADGDGGPVIIARTDAARSSFEE
ALIRAHLFHELGADMTFVEAPSCRKQMETYCRSVPGLKLANMLEMGDTPI
LPPQELFDIGYSIAAYPLTLLSASVRAQEEALLRLREGVPERVRPLLKSF
AELRDVVGFPSYYDTEDKYK*
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mRNA from alignment at tig00000860_pilon:1282321..1283199-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9026.t1 ID=Ggra9026.t1|Name=Ggra9026.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=879bp|location=Sequence derived from alignment at tig00000860_pilon:1282321..1283199- (Gracilaria gracilis GNS1m male)
ATGCCATGTTGCGGTGACGGACTCTCAGCCAAGCTTATCCAACGAGCAGA
CTTTGACCTCACATTTATGTCTGGCTTCTCAACGGCCGGTTGCAAGGGGC
TTCCCGATACAGGTCTCCTCAGCTACAAAGAAATGTTAGAAAACGTAGCC
GAGGTGTCCGATGTTATTGATATACCGCTTATTGCTGACGCGGATACTGG
CTTTGGAAATGCGGTCAACGTGCGCCGTACAGTTATTGGTTTCGCCAAGG
CTGGAGCTTCAGGTCTACTCATTGAGGATCAGGTTAATCCGAAAAGGTAA
TGTAACTTGTCAAATCCTTTTCCTTCACATCATTCGAATCTCTAACACAC
CTCAACCTACAGATGCGGTCATACCAAAGGAAAGGAAGTTGTTGACAGGA
ACGAAGCCTTGCGTCGAATCCGTGCCGCCTGTGATGCACGAGATGAAATT
GCAGACGGTGATGGAGGCCCAGTTATTATCGCTCGAACAGATGCCGCGCG
CTCCAGCTTTGAAGAAGCACTAATTCGTGCTCACCTTTTCCACGAGCTTG
GCGCTGATATGACCTTTGTTGAAGCACCCAGTTGTAGAAAGCAAATGGAA
ACATACTGTCGGTCAGTTCCGGGTCTAAAGCTTGCCAACATGCTTGAAAT
GGGAGACACTCCAATATTGCCTCCACAAGAACTGTTTGATATTGGTTATT
CAATTGCTGCCTACCCTCTCACACTGCTGAGTGCTTCGGTCAGAGCTCAA
GAGGAGGCGCTTTTAAGGCTACGGGAAGGCGTACCAGAAAGGGTGCGACC
ACTGCTCAAGAGCTTTGCGGAGCTACGAGATGTCGTCGGATTTCCCAGTT
ACTACGATACAGAAGACAAGTATAAATGA
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Coding sequence (CDS) from alignment at tig00000860_pilon:1282321..1283199-

>Ggra9026.t1 ID=Ggra9026.t1|Name=Ggra9026.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=813bp|location=Sequence derived from alignment at tig00000860_pilon:1282321..1283199- (Gracilaria gracilis GNS1m male)
ATGCCATGTTGCGGTGACGGACTCTCAGCCAAGCTTATCCAACGAGCAGA
CTTTGACCTCACATTTATGTCTGGCTTCTCAACGGCCGGTTGCAAGGGGC
TTCCCGATACAGGTCTCCTCAGCTACAAAGAAATGTTAGAAAACGTAGCC
GAGGTGTCCGATGTTATTGATATACCGCTTATTGCTGACGCGGATACTGG
CTTTGGAAATGCGGTCAACGTGCGCCGTACAGTTATTGGTTTCGCCAAGG
CTGGAGCTTCAGGTCTACTCATTGAGGATCAGGTTAATCCGAAAAGATGC
GGTCATACCAAAGGAAAGGAAGTTGTTGACAGGAACGAAGCCTTGCGTCG
AATCCGTGCCGCCTGTGATGCACGAGATGAAATTGCAGACGGTGATGGAG
GCCCAGTTATTATCGCTCGAACAGATGCCGCGCGCTCCAGCTTTGAAGAA
GCACTAATTCGTGCTCACCTTTTCCACGAGCTTGGCGCTGATATGACCTT
TGTTGAAGCACCCAGTTGTAGAAAGCAAATGGAAACATACTGTCGGTCAG
TTCCGGGTCTAAAGCTTGCCAACATGCTTGAAATGGGAGACACTCCAATA
TTGCCTCCACAAGAACTGTTTGATATTGGTTATTCAATTGCTGCCTACCC
TCTCACACTGCTGAGTGCTTCGGTCAGAGCTCAAGAGGAGGCGCTTTTAA
GGCTACGGGAAGGCGTACCAGAAAGGGTGCGACCACTGCTCAAGAGCTTT
GCGGAGCTACGAGATGTCGTCGGATTTCCCAGTTACTACGATACAGAAGA
CAAGTATAAATGA
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