Ggra9025.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9025.t1
Unique NameGgra9025.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length347
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:1281275..1282315 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7070.TC009385-PA
Preferred nameRPAP3
PFAMsRPAP3_C,TPR_1,TPR_11,TPR_2,TPR_7,TPR_8
Max annot lvl33208|Metazoa
KEGG rclassRC00045
KEGG koko:K00237
KEGG ReactionR02164
KEGG Pathwayko00020,ko00190,ko01100,ko01110,ko01120,ko01130,ko01200,ko04714,ko04932,ko05010,ko05012,ko05016,map00020,map00190,map01100,map01110,map01120,map01130,map01200,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00009,M00011,M00148
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0010941,GO:0030544,GO:0031072,GO:0032991,GO:0042752,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043523,GO:0043524,GO:0044424,GO:0044444,GO:0044464,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050795,GO:0051879,GO:0060548,GO:0065007,GO:0097255,GO:1901214,GO:1901215,GO:1904059,GO:2000671,GO:2000672
Evalue1.46e-13
EggNOG OGsCOG0457@1|root,KOG4648@2759|Eukaryota,38GIQ@33154|Opisthokonta,3BEKH@33208|Metazoa,3CVSY@33213|Bilateria,41Z3X@6656|Arthropoda,3SKYY@50557|Insecta
DescriptionPotential Monad-binding region of RPAP3
COG categoryO
BRITEko00000,ko00001,ko00002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9025Ggra9025Gracilaria gracilis GNS1m malegenetig00000860_pilon 1281275..1282315 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9025.t1.start1Ggra9025.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 1281275..1281277 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9025.t1.CDS1Ggra9025.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 1281275..1282315 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9025.t1.exon1Ggra9025.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 1281275..1282315 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9025.t1.stop1Ggra9025.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 1282313..1282315 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9025.t1Ggra9025.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 1281275..1282315 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9025.t1 ID=Ggra9025.t1|Name=Ggra9025.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=347bp
MESGTEEQLLQLSLTGRLPPSLQKSFDEEKEKGNDAYRRGRYHEAVQRYT
TAESINPMSPIPPANRAMVFLKLKDYERAKAEAAIAHELHESLPEEDRSK
RLCAKILLRRATANKELLLFALAAEDYQAVLDLEDNATAKTELSILRERY
GVRPPTPRSRSRNSAAEAKIKIVSESNGHTNGVTPPTNKPEAPLPFTEVQ
DETQILHLSDNTMQNLVLKWSTSEPHNAAEFERSWKSLKDDELAQAKYLL
DVVGPQRIERGLLGEILTPQLIQRVVAVLSTAVAQYRSYSTSAAKILVAF
SRVSRFDMILMFLSSSERQEIRALIDSVEKNGVTTSLMRSLRGSYL*
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spliced messenger RNA

>Ggra9025.t1 ID=Ggra9025.t1|Name=Ggra9025.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1041bp|location=Sequence derived from alignment at tig00000860_pilon:1281275..1282315+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGTCGGGAACGGAGGAACAGCTCTTGCAATTAAGTTTAACTGGCAG
GTTGCCACCATCGTTGCAGAAGTCATTCGATGAGGAAAAGGAAAAGGGAA
ATGATGCGTATCGGCGCGGCCGCTACCATGAAGCAGTACAACGTTATACA
ACAGCCGAATCCATAAACCCGATGAGTCCCATCCCTCCTGCGAATCGGGC
TATGGTGTTTCTCAAGTTAAAAGATTATGAGCGTGCAAAGGCTGAAGCAG
CAATTGCACATGAGCTTCACGAATCTCTGCCTGAAGAAGACAGGAGCAAA
CGTCTGTGTGCTAAAATCTTACTTCGACGAGCTACTGCAAACAAAGAGCT
GCTCCTTTTCGCCCTTGCAGCCGAGGACTATCAGGCTGTGCTTGATCTTG
AAGACAATGCAACCGCTAAAACGGAGCTAAGCATTTTGCGAGAAAGGTAC
GGTGTTCGGCCTCCGACACCTCGTTCGCGTTCAAGAAACTCAGCTGCAGA
GGCGAAGATAAAGATTGTATCTGAAAGCAACGGGCACACAAACGGGGTTA
CTCCACCAACTAATAAACCAGAAGCACCGCTGCCGTTCACTGAAGTCCAA
GATGAAACGCAAATACTGCACCTATCTGACAACACAATGCAGAACCTTGT
CCTGAAATGGAGTACGAGCGAACCACACAATGCAGCTGAATTTGAAAGAT
CATGGAAGTCTCTCAAGGATGATGAATTAGCACAAGCGAAATATCTTCTA
GATGTTGTTGGTCCTCAACGAATCGAACGCGGTCTCCTTGGTGAAATACT
AACCCCTCAACTTATTCAACGCGTAGTTGCGGTCTTGTCTACCGCTGTCG
CTCAATATCGGTCCTACAGCACGTCTGCGGCGAAGATACTGGTGGCGTTC
TCCCGAGTATCTCGCTTTGATATGATTCTAATGTTTTTATCATCTTCTGA
AAGACAGGAAATACGTGCTCTCATCGATTCTGTGGAGAAGAATGGAGTAA
CTACGTCACTAATGAGAAGCTTAAGAGGCTCCTACCTGTAG
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protein sequence of Ggra9025.t1

>Ggra9025.t1 ID=Ggra9025.t1|Name=Ggra9025.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=347bp
MESGTEEQLLQLSLTGRLPPSLQKSFDEEKEKGNDAYRRGRYHEAVQRYT
TAESINPMSPIPPANRAMVFLKLKDYERAKAEAAIAHELHESLPEEDRSK
RLCAKILLRRATANKELLLFALAAEDYQAVLDLEDNATAKTELSILRERY
GVRPPTPRSRSRNSAAEAKIKIVSESNGHTNGVTPPTNKPEAPLPFTEVQ
DETQILHLSDNTMQNLVLKWSTSEPHNAAEFERSWKSLKDDELAQAKYLL
DVVGPQRIERGLLGEILTPQLIQRVVAVLSTAVAQYRSYSTSAAKILVAF
SRVSRFDMILMFLSSSERQEIRALIDSVEKNGVTTSLMRSLRGSYL*
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mRNA from alignment at tig00000860_pilon:1281275..1282315+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9025.t1 ID=Ggra9025.t1|Name=Ggra9025.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1041bp|location=Sequence derived from alignment at tig00000860_pilon:1281275..1282315+ (Gracilaria gracilis GNS1m male)
ATGGAGTCGGGAACGGAGGAACAGCTCTTGCAATTAAGTTTAACTGGCAG
GTTGCCACCATCGTTGCAGAAGTCATTCGATGAGGAAAAGGAAAAGGGAA
ATGATGCGTATCGGCGCGGCCGCTACCATGAAGCAGTACAACGTTATACA
ACAGCCGAATCCATAAACCCGATGAGTCCCATCCCTCCTGCGAATCGGGC
TATGGTGTTTCTCAAGTTAAAAGATTATGAGCGTGCAAAGGCTGAAGCAG
CAATTGCACATGAGCTTCACGAATCTCTGCCTGAAGAAGACAGGAGCAAA
CGTCTGTGTGCTAAAATCTTACTTCGACGAGCTACTGCAAACAAAGAGCT
GCTCCTTTTCGCCCTTGCAGCCGAGGACTATCAGGCTGTGCTTGATCTTG
AAGACAATGCAACCGCTAAAACGGAGCTAAGCATTTTGCGAGAAAGGTAC
GGTGTTCGGCCTCCGACACCTCGTTCGCGTTCAAGAAACTCAGCTGCAGA
GGCGAAGATAAAGATTGTATCTGAAAGCAACGGGCACACAAACGGGGTTA
CTCCACCAACTAATAAACCAGAAGCACCGCTGCCGTTCACTGAAGTCCAA
GATGAAACGCAAATACTGCACCTATCTGACAACACAATGCAGAACCTTGT
CCTGAAATGGAGTACGAGCGAACCACACAATGCAGCTGAATTTGAAAGAT
CATGGAAGTCTCTCAAGGATGATGAATTAGCACAAGCGAAATATCTTCTA
GATGTTGTTGGTCCTCAACGAATCGAACGCGGTCTCCTTGGTGAAATACT
AACCCCTCAACTTATTCAACGCGTAGTTGCGGTCTTGTCTACCGCTGTCG
CTCAATATCGGTCCTACAGCACGTCTGCGGCGAAGATACTGGTGGCGTTC
TCCCGAGTATCTCGCTTTGATATGATTCTAATGTTTTTATCATCTTCTGA
AAGACAGGAAATACGTGCTCTCATCGATTCTGTGGAGAAGAATGGAGTAA
CTACGTCACTAATGAGAAGCTTAAGAGGCTCCTACCTGTAG
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Coding sequence (CDS) from alignment at tig00000860_pilon:1281275..1282315+

>Ggra9025.t1 ID=Ggra9025.t1|Name=Ggra9025.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1041bp|location=Sequence derived from alignment at tig00000860_pilon:1281275..1282315+ (Gracilaria gracilis GNS1m male)
ATGGAGTCGGGAACGGAGGAACAGCTCTTGCAATTAAGTTTAACTGGCAG
GTTGCCACCATCGTTGCAGAAGTCATTCGATGAGGAAAAGGAAAAGGGAA
ATGATGCGTATCGGCGCGGCCGCTACCATGAAGCAGTACAACGTTATACA
ACAGCCGAATCCATAAACCCGATGAGTCCCATCCCTCCTGCGAATCGGGC
TATGGTGTTTCTCAAGTTAAAAGATTATGAGCGTGCAAAGGCTGAAGCAG
CAATTGCACATGAGCTTCACGAATCTCTGCCTGAAGAAGACAGGAGCAAA
CGTCTGTGTGCTAAAATCTTACTTCGACGAGCTACTGCAAACAAAGAGCT
GCTCCTTTTCGCCCTTGCAGCCGAGGACTATCAGGCTGTGCTTGATCTTG
AAGACAATGCAACCGCTAAAACGGAGCTAAGCATTTTGCGAGAAAGGTAC
GGTGTTCGGCCTCCGACACCTCGTTCGCGTTCAAGAAACTCAGCTGCAGA
GGCGAAGATAAAGATTGTATCTGAAAGCAACGGGCACACAAACGGGGTTA
CTCCACCAACTAATAAACCAGAAGCACCGCTGCCGTTCACTGAAGTCCAA
GATGAAACGCAAATACTGCACCTATCTGACAACACAATGCAGAACCTTGT
CCTGAAATGGAGTACGAGCGAACCACACAATGCAGCTGAATTTGAAAGAT
CATGGAAGTCTCTCAAGGATGATGAATTAGCACAAGCGAAATATCTTCTA
GATGTTGTTGGTCCTCAACGAATCGAACGCGGTCTCCTTGGTGAAATACT
AACCCCTCAACTTATTCAACGCGTAGTTGCGGTCTTGTCTACCGCTGTCG
CTCAATATCGGTCCTACAGCACGTCTGCGGCGAAGATACTGGTGGCGTTC
TCCCGAGTATCTCGCTTTGATATGATTCTAATGTTTTTATCATCTTCTGA
AAGACAGGAAATACGTGCTCTCATCGATTCTGTGGAGAAGAATGGAGTAA
CTACGTCACTAATGAGAAGCTTAAGAGGCTCCTACCTGTAG
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