Ggra9022.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9022.t1
Unique NameGgra9022.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length353
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:1264673..1265731 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog42099.EPrPV00000024813
Max annot lvl121069|Pythiales
Evalue3.6e-24
EggNOG OGs2CRG1@1|root,2R7YG@2759|Eukaryota,1MK2E@121069|Pythiales
Descriptionfunction. Source PGD
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9022Ggra9022Gracilaria gracilis GNS1m malegenetig00000860_pilon 1264673..1265731 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9022.t1.stop1Ggra9022.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 1264673..1264675 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9022.t1.CDS1Ggra9022.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 1264673..1265731 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9022.t1.exon1Ggra9022.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 1264673..1265731 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9022.t1.start1Ggra9022.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 1265729..1265731 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9022.t1Ggra9022.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 1264673..1265731 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9022.t1 ID=Ggra9022.t1|Name=Ggra9022.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=353bp
MSPTPVTGSQEQRPPPETIVLPMRNEEERPAHQASEGALAVRSRNAEAQL
RTPSASLTRHIHPPLITKKITPVKGKNIRSNARNTGGRGSGFTQKEIDSL
LDVLEEHLPVGRDELEAVQRVHHSPFPDLSRNIDSLKRKFTALHRKKVPT
GDPHIPEDIRRAKHIREEISERMDLGDAGDVEEVVEECFDTLEVCLDDTN
DPDEGQNLDAEMENGRSNAETPISRTPIIPPGRPPSVTGRPGFSPRPLIN
KRQSSPPDPNDDIMSIYKMTLLDEQKRRAEEHQRRIQEREEERARREEER
KRREEERAGERERREEDHRRQERFMQMLMVMAFGGKDASRTLFHDSESGS
GK*
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spliced messenger RNA

>Ggra9022.t1 ID=Ggra9022.t1|Name=Ggra9022.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1059bp|location=Sequence derived from alignment at tig00000860_pilon:1264673..1265731- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCCTACGCCCGTAACGGGTAGTCAAGAGCAGCGACCGCCTCCGGA
AACCATCGTCCTACCAATGAGAAACGAAGAGGAAAGGCCCGCCCATCAGG
CGTCAGAGGGAGCACTTGCGGTGAGAAGCAGAAACGCGGAAGCGCAGCTG
CGCACGCCATCGGCCAGCCTCACTCGCCACATTCACCCCCCGCTGATTAC
AAAGAAGATAACACCTGTCAAAGGTAAAAACATCCGCAGCAATGCTCGAA
ACACGGGGGGAAGAGGGAGCGGTTTTACCCAGAAGGAAATCGATTCCCTG
CTGGACGTTTTGGAGGAGCATCTGCCTGTGGGAAGGGATGAGTTGGAGGC
GGTGCAAAGGGTACATCACTCTCCCTTTCCTGACTTGTCGCGCAATATAG
ACTCGCTAAAGAGAAAGTTTACAGCTCTGCACCGCAAAAAAGTGCCGACC
GGAGATCCGCACATTCCGGAAGACATAAGGAGGGCGAAACATATACGGGA
GGAAATTTCAGAGCGGATGGACTTGGGGGACGCGGGGGATGTTGAAGAAG
TAGTGGAAGAGTGTTTTGATACGCTCGAGGTGTGTCTAGACGATACAAAC
GACCCAGATGAAGGACAAAATTTGGACGCTGAAATGGAAAACGGGCGCAG
TAACGCAGAAACTCCGATAAGCAGGACGCCGATCATACCGCCGGGTAGAC
CCCCATCAGTTACAGGGCGCCCGGGATTTTCGCCACGGCCTTTAATAAAT
AAGCGCCAATCATCCCCGCCAGACCCGAACGACGATATAATGTCAATCTA
CAAGATGACACTGCTCGATGAGCAGAAGCGGCGGGCAGAAGAGCACCAAC
GAAGAATACAGGAACGCGAGGAGGAGCGGGCCCGACGGGAAGAGGAACGG
AAGCGCCGTGAGGAGGAACGCGCCGGTGAGCGCGAACGTCGTGAGGAGGA
CCATAGAAGGCAGGAAAGGTTTATGCAGATGCTTATGGTAATGGCCTTTG
GAGGCAAGGATGCGTCGCGGACTCTCTTTCATGACAGCGAAAGTGGCTCT
GGGAAGTAG
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protein sequence of Ggra9022.t1

>Ggra9022.t1 ID=Ggra9022.t1|Name=Ggra9022.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=353bp
MSPTPVTGSQEQRPPPETIVLPMRNEEERPAHQASEGALAVRSRNAEAQL
RTPSASLTRHIHPPLITKKITPVKGKNIRSNARNTGGRGSGFTQKEIDSL
LDVLEEHLPVGRDELEAVQRVHHSPFPDLSRNIDSLKRKFTALHRKKVPT
GDPHIPEDIRRAKHIREEISERMDLGDAGDVEEVVEECFDTLEVCLDDTN
DPDEGQNLDAEMENGRSNAETPISRTPIIPPGRPPSVTGRPGFSPRPLIN
KRQSSPPDPNDDIMSIYKMTLLDEQKRRAEEHQRRIQEREEERARREEER
KRREEERAGERERREEDHRRQERFMQMLMVMAFGGKDASRTLFHDSESGS
GK*
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mRNA from alignment at tig00000860_pilon:1264673..1265731-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9022.t1 ID=Ggra9022.t1|Name=Ggra9022.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1059bp|location=Sequence derived from alignment at tig00000860_pilon:1264673..1265731- (Gracilaria gracilis GNS1m male)
ATGTCTCCTACGCCCGTAACGGGTAGTCAAGAGCAGCGACCGCCTCCGGA
AACCATCGTCCTACCAATGAGAAACGAAGAGGAAAGGCCCGCCCATCAGG
CGTCAGAGGGAGCACTTGCGGTGAGAAGCAGAAACGCGGAAGCGCAGCTG
CGCACGCCATCGGCCAGCCTCACTCGCCACATTCACCCCCCGCTGATTAC
AAAGAAGATAACACCTGTCAAAGGTAAAAACATCCGCAGCAATGCTCGAA
ACACGGGGGGAAGAGGGAGCGGTTTTACCCAGAAGGAAATCGATTCCCTG
CTGGACGTTTTGGAGGAGCATCTGCCTGTGGGAAGGGATGAGTTGGAGGC
GGTGCAAAGGGTACATCACTCTCCCTTTCCTGACTTGTCGCGCAATATAG
ACTCGCTAAAGAGAAAGTTTACAGCTCTGCACCGCAAAAAAGTGCCGACC
GGAGATCCGCACATTCCGGAAGACATAAGGAGGGCGAAACATATACGGGA
GGAAATTTCAGAGCGGATGGACTTGGGGGACGCGGGGGATGTTGAAGAAG
TAGTGGAAGAGTGTTTTGATACGCTCGAGGTGTGTCTAGACGATACAAAC
GACCCAGATGAAGGACAAAATTTGGACGCTGAAATGGAAAACGGGCGCAG
TAACGCAGAAACTCCGATAAGCAGGACGCCGATCATACCGCCGGGTAGAC
CCCCATCAGTTACAGGGCGCCCGGGATTTTCGCCACGGCCTTTAATAAAT
AAGCGCCAATCATCCCCGCCAGACCCGAACGACGATATAATGTCAATCTA
CAAGATGACACTGCTCGATGAGCAGAAGCGGCGGGCAGAAGAGCACCAAC
GAAGAATACAGGAACGCGAGGAGGAGCGGGCCCGACGGGAAGAGGAACGG
AAGCGCCGTGAGGAGGAACGCGCCGGTGAGCGCGAACGTCGTGAGGAGGA
CCATAGAAGGCAGGAAAGGTTTATGCAGATGCTTATGGTAATGGCCTTTG
GAGGCAAGGATGCGTCGCGGACTCTCTTTCATGACAGCGAAAGTGGCTCT
GGGAAGTAG
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Coding sequence (CDS) from alignment at tig00000860_pilon:1264673..1265731-

>Ggra9022.t1 ID=Ggra9022.t1|Name=Ggra9022.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1059bp|location=Sequence derived from alignment at tig00000860_pilon:1264673..1265731- (Gracilaria gracilis GNS1m male)
ATGTCTCCTACGCCCGTAACGGGTAGTCAAGAGCAGCGACCGCCTCCGGA
AACCATCGTCCTACCAATGAGAAACGAAGAGGAAAGGCCCGCCCATCAGG
CGTCAGAGGGAGCACTTGCGGTGAGAAGCAGAAACGCGGAAGCGCAGCTG
CGCACGCCATCGGCCAGCCTCACTCGCCACATTCACCCCCCGCTGATTAC
AAAGAAGATAACACCTGTCAAAGGTAAAAACATCCGCAGCAATGCTCGAA
ACACGGGGGGAAGAGGGAGCGGTTTTACCCAGAAGGAAATCGATTCCCTG
CTGGACGTTTTGGAGGAGCATCTGCCTGTGGGAAGGGATGAGTTGGAGGC
GGTGCAAAGGGTACATCACTCTCCCTTTCCTGACTTGTCGCGCAATATAG
ACTCGCTAAAGAGAAAGTTTACAGCTCTGCACCGCAAAAAAGTGCCGACC
GGAGATCCGCACATTCCGGAAGACATAAGGAGGGCGAAACATATACGGGA
GGAAATTTCAGAGCGGATGGACTTGGGGGACGCGGGGGATGTTGAAGAAG
TAGTGGAAGAGTGTTTTGATACGCTCGAGGTGTGTCTAGACGATACAAAC
GACCCAGATGAAGGACAAAATTTGGACGCTGAAATGGAAAACGGGCGCAG
TAACGCAGAAACTCCGATAAGCAGGACGCCGATCATACCGCCGGGTAGAC
CCCCATCAGTTACAGGGCGCCCGGGATTTTCGCCACGGCCTTTAATAAAT
AAGCGCCAATCATCCCCGCCAGACCCGAACGACGATATAATGTCAATCTA
CAAGATGACACTGCTCGATGAGCAGAAGCGGCGGGCAGAAGAGCACCAAC
GAAGAATACAGGAACGCGAGGAGGAGCGGGCCCGACGGGAAGAGGAACGG
AAGCGCCGTGAGGAGGAACGCGCCGGTGAGCGCGAACGTCGTGAGGAGGA
CCATAGAAGGCAGGAAAGGTTTATGCAGATGCTTATGGTAATGGCCTTTG
GAGGCAAGGATGCGTCGCGGACTCTCTTTCATGACAGCGAAAGTGGCTCT
GGGAAGTAG
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