Ggra9021.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9021.t1
Unique NameGgra9021.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length265
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:1182432..1186462 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog946362.XP_004993326.1
PFAMsChromo,RVP_2,RVT_1,Retrotrans_gag,rve,zf-CCHC,zf-H2C2
Max annot lvl33154|Opisthokonta
KEGG koko:K07497
GOsGO:0000943,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0003887,GO:0003964,GO:0004518,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006259,GO:0006278,GO:0006508,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0018130,GO:0019438,GO:0019538,GO:0032196,GO:0032197,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0071897,GO:0090304,GO:0090305,GO:0090501,GO:0097159,GO:0140096,GO:0140097,GO:0140098,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576
Evalue2.47e-13
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38F42@33154|Opisthokonta
Descriptionretrotransposable element Tf2 155 kDa protein type 1-like
COG categoryG
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9021Ggra9021Gracilaria gracilis GNS1m malegenetig00000860_pilon 1182432..1186462 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9021.t1Ggra9021.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 1182432..1186462 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9021.t1.start1Ggra9021.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 1182432..1182434 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9021.t1.CDS1Ggra9021.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 1182432..1182840 +
Ggra9021.t1.CDS2Ggra9021.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000860_pilon 1186077..1186462 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9021.t1.exon1Ggra9021.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 1182432..1182840 +
Ggra9021.t1.exon2Ggra9021.t1.exon2Gracilaria gracilis GNS1m maleexontig00000860_pilon 1186077..1186462 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9021.t1.intron1Ggra9021.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000860_pilon 1182841..1186076 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9021.t1.stop1Ggra9021.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 1186460..1186462 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9021.t1 ID=Ggra9021.t1|Name=Ggra9021.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=265bp
MNVVLEMLSVSCKQNGSVASYISSFRNIVLTIPDMSSSEKWDKFVSGLKP
KIQFEVRKANCQEFEEATKIAMRVEEAFSGVSMPSSSSTASNETAERAGS
TIVPMEIGNTQLATSAKSKQRLQDIRNNACFKCHKPGDRGWISHRLFKDS
YSNSQQSSKLSARRYGPFKILELVGRNAVRLQLPAHMRIHPVIHVSHTKP
HREQPREIAQVGRSVPLPVDATAEVPLFKVDRILKHRERGRGYQWLALME
NSSTHEAQWQPTRD*
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spliced messenger RNA

>Ggra9021.t1 ID=Ggra9021.t1|Name=Ggra9021.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=795bp|location=Sequence derived from alignment at tig00000860_pilon:1182432..1186462+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGTCGTGCTCGAGATGCTCTCCGTTTCGTGCAAGCAAAATGGATC
TGTTGCTTCATATATTTCGAGTTTCCGCAATATTGTTCTGACTATTCCTG
ATATGAGTTCAAGCGAGAAGTGGGACAAGTTTGTAAGTGGCCTGAAACCC
AAGATTCAGTTTGAGGTACGAAAGGCAAACTGTCAGGAATTTGAGGAGGC
AACAAAAATTGCGATGCGGGTGGAAGAAGCATTCTCTGGGGTATCCATGC
CATCTTCCTCATCGACTGCATCAAACGAGACTGCAGAACGAGCAGGTTCT
ACGATTGTCCCCATGGAGATTGGTAACACTCAGTTAGCCACCTCAGCAAA
GAGCAAGCAGCGACTACAAGATATTCGTAACAACGCTTGCTTCAAGTGCC
ATAAGCCGGgggatcgtGGTTGGATTTCTCATCGGTTGTTCAAGGACTCC
TACAGTAATTCGCAGCAGTCGTCGAAGTTGTCCGCAAGACGATACGGTCC
GTTTAAGATTCTGGAGCTTGTTGGGCGAAATGCGGTCCGTCTGCAGCTTC
CAGCGCACATGCGAATTCACCCTGTGATTCATGTGTCGCATACGAAGCCG
CACCGAGAGCAGCCGCGAGAAATTGCTCAAGTGGGACGAAGCGTGCCACT
TCCAGTCGATGCTACTGCTGAAGTCCCGTTGTTCAAGGTGGACCGAATTC
TCAAGCATCGTGAGCGCGGTAGAGGCTATCAGTGGCTGGCGCTGATGGAA
AACTCTAGTACACACGAGGCGCAATGGCAGCCAACTCGAGACTGA
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protein sequence of Ggra9021.t1

>Ggra9021.t1 ID=Ggra9021.t1|Name=Ggra9021.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=265bp
MNVVLEMLSVSCKQNGSVASYISSFRNIVLTIPDMSSSEKWDKFVSGLKP
KIQFEVRKANCQEFEEATKIAMRVEEAFSGVSMPSSSSTASNETAERAGS
TIVPMEIGNTQLATSAKSKQRLQDIRNNACFKCHKPGDRGWISHRLFKDS
YSNSQQSSKLSARRYGPFKILELVGRNAVRLQLPAHMRIHPVIHVSHTKP
HREQPREIAQVGRSVPLPVDATAEVPLFKVDRILKHRERGRGYQWLALME
NSSTHEAQWQPTRD*
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mRNA from alignment at tig00000860_pilon:1182432..1186462+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9021.t1 ID=Ggra9021.t1|Name=Ggra9021.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=4031bp|location=Sequence derived from alignment at tig00000860_pilon:1182432..1186462+ (Gracilaria gracilis GNS1m male)
ATGAACGTCGTGCTCGAGATGCTCTCCGTTTCGTGCAAGCAAAATGGATC
TGTTGCTTCATATATTTCGAGTTTCCGCAATATTGTTCTGACTATTCCTG
ATATGAGTTCAAGCGAGAAGTGGGACAAGTTTGTAAGTGGCCTGAAACCC
AAGATTCAGTTTGAGGTACGAAAGGCAAACTGTCAGGAATTTGAGGAGGC
AACAAAAATTGCGATGCGGGTGGAAGAAGCATTCTCTGGGGTATCCATGC
CATCTTCCTCATCGACTGCATCAAACGAGACTGCAGAACGAGCAGGTTCT
ACGATTGTCCCCATGGAGATTGGTAACACTCAGTTAGCCACCTCAGCAAA
GAGCAAGCAGCGACTACAAGATATTCGTAACAACGCTTGCTTCAAGTGCC
ATAAGCCGGGTTGCCGTCCATGGAAGCACCGTAATGGATCATATGGGTAG
CAAGCATCCGTTTCCAATATCGAGGCGGCCTTGGCTTCAGAGGAACACGA
CGATAGTGTAGAATCTGATAGTTCGGGAAACTAAACTGTCCTCCTAGAAA
CAATAAGAGCACGTTAGGAGGACGAGCTCACTTAGACGTGTCGTTGCAGA
ACGTGCAATCCAACGTTTCTGCCGAAGTCCAATGTGTTCCATTACTAGTA
ATGagtgggacatttaacggtatctctgcccgtgtgctgaaagatgacgg
ttgcacttccaacgttgtttcgcgagagtttgcatacgctaaccgggacg
tactgaagttttcgctggtattgatggatgtcaatcattctaagatcggt
gccagcgaagttgctactgaaattattcccaatgggactatatgtattgg
ttcctattgttatactggtagctggatagttgccgactgcaggtatgacg
ttttgctgggaatgccgtggcatactgatgaaaatccacagacagattat
gagagccgtacaattgcggtgaaggatagtactctgttcgcaagctctgt
ctcccgagcagttaccttacaagtttcaaaccttggtgtgaaacgttttc
gcagactactacgtcgtcgtccgcagggtacgcaggtctatcgtgtcgtt
gaagtctccaactctcagttgtcaacggcgtcttcttcaaaaagcgcgaa
agctcaattactgggcaatgaatatcctgagctacgcagtttattggaag
agtttgaggatgttttccaagaggaactgcccaatggcttgcctcccaaa
cgtgaagtggatcacgcgattgaaatcctgccaggtagcatgactccaca
ccggccattgtatcaactgtcgcctgctgagcttgttgctgcacgtgaat
atgtggacaagcttttacgatccggcaaaattcgcccgagtcgttccccg
tatggctctccactgttttttgtgaaggagccgggccgagaccttcgcgg
tgttgttgattaccgcggtctgaaccgtattaccaagcgtaataacgctc
cccttccaagatgtgacgagatgttcgaccggctcggcaaggctcgtttc
ttctccaagttggaccttaagactggttttcaccagatccgattgcgtcc
tgatgatattgagaagacggcctttaattcgaagtatggccaattcgagt
atctcgtgatgcccatgggtttatgcaatgcacccgccacgttccaatct
ttgatgaaccgtgtcctccatgacggtattgatcggttcctggtcgttta
catagacgatattctcatatacagcaacacaagggaggaacatatgcagc
atatacgtatggttcttgaacgtttgcagaagcataagctttatgcttct
ccgaagaaatgttcatttatggatgaagagaccgagtttttgggcctcat
ggtcggccgcgacggaattcgcgtccacccgaataaggtcgaggtgatca
agaattggcctcgacccattaatcttactgagctccgcagcttcctagga
cttgttcagttctttaggaggtttatacctaacttttcggctcgtgccgc
accgctctccgttttcttgcaaaagcgttccggtatacggagctgggatg
actgcgctcaagccgcgtttgctgatctgaagtctgctttgatgactgcg
cctgtcctcgtacctcctgattggtctcgccctttccgggttcatatcga
tgcttcgcaggcagctgtgggggcgacactgactcagtgtgatgatgcag
gtcatgaccgtgtggtggcatacgcctcgaagaagctcacagcggctgag
cagaattataccgcaaacgagagggagctcttggctttggtgtttgcctt
gcaacggttccgttgctaccttgaaggtgcttcgtttgatgtatttactg
acaatcaggtcgtcaaaagcttcttgacgaagaagtctttgaacagacgt
gaagctcgctggttggatacattggcgtcgttcaacattcggcaaatgaa
tcttgtacgcggcaaaattcatgtgttgggggactcgttatctcgaattc
cagatcggctgtctgtgcagcagctggaatgtacctcgccatcgttcttg
gatattcgcaactcaatcaattgctacgagaaggaccagcagtttggccc
gattgtggcagcactgaaaggacaatggccagatgacccgaagaagcggc
gaaaacttgaggagttgttgccctctttttctgaacacgaggacggaggt
ctgctttataagggaaaattgtgtgtgccgtcgcacgctcgacgatctgt
cttggagcttgctcacgattctcatgttgccggtcacttcggctccgcga
agaccttggcgcgtcttgccgagtatcattggaaacacaaggccagggat
gtgaagcaatattgtgatggttgcctggtttgtcagcagcagaaggattc
tcatggtgcaaccttaaatgaaccaaccgcgttgccgatccccacacgcc
gctggggccttgtggcgacggattttattgtcaagcttcctaaaacccct
cgtggttttgatgcaatctcgacatgggtggatcgcctgtcacgacgtgt
tcggtttattgcttgtaaggaaaccgataaggcccccgatgtcgctctct
cctttttcacacacattttcccgcatcatggtttgccagatggattgatt
tctgaccgagaccctaggttcacgtctctcttctgggagtctcttatgaa
gctttgtggtgtgaagcttcgcatggcctcttcgaagcatccgcagacag
acggtgcctccgaagtcatgaaccgaatggtagaaaactacatccgttgt
ttctgcgcttacgaacagaatgacagggatctcttgttaccctgcgctga
gtttgcctataattcgtccgtctcagaggacctcgggctatcgccgtttg
agatagatttgggctggaagccaaagggaccgcttgatgctttgtttcag
gctccgtcgaacattgaatctttattggattttagggaacgtctaaaaac
agtgatggaagatgcgcagtatgctcaccaactcgccaaggccaagcaaa
ttgcagaagcgagtgtccactgcagacgcccaacatatcgcgcaggggat
cgtGGTTGGATTTCTCATCGGTTGTTCAAGGACTCCTACAGTAATTCGCA
GCAGTCGTCGAAGTTGTCCGCAAGACGATACGGTCCGTTTAAGATTCTGG
AGCTTGTTGGGCGAAATGCGGTCCGTCTGCAGCTTCCAGCGCACATGCGA
ATTCACCCTGTGATTCATGTGTCGCATACGAAGCCGCACCGAGAGCAGCC
GCGAGAAATTGCTCAAGTGGGACGAAGCGTGCCACTTCCAGTCGATGCTA
CTGCTGAAGTCCCGTTGTTCAAGGTGGACCGAATTCTCAAGCATCGTGAG
CGCGGTAGAGGCTATCAGTGGCTGGCGCTGATGGAAAACTCTAGTACACA
CGAGGCGCAATGGCAGCCAACTCGAGACTGA
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Coding sequence (CDS) from alignment at tig00000860_pilon:1182432..1186462+

>Ggra9021.t1 ID=Ggra9021.t1|Name=Ggra9021.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=795bp|location=Sequence derived from alignment at tig00000860_pilon:1182432..1186462+ (Gracilaria gracilis GNS1m male)
ATGAACGTCGTGCTCGAGATGCTCTCCGTTTCGTGCAAGCAAAATGGATC
TGTTGCTTCATATATTTCGAGTTTCCGCAATATTGTTCTGACTATTCCTG
ATATGAGTTCAAGCGAGAAGTGGGACAAGTTTGTAAGTGGCCTGAAACCC
AAGATTCAGTTTGAGGTACGAAAGGCAAACTGTCAGGAATTTGAGGAGGC
AACAAAAATTGCGATGCGGGTGGAAGAAGCATTCTCTGGGGTATCCATGC
CATCTTCCTCATCGACTGCATCAAACGAGACTGCAGAACGAGCAGGTTCT
ACGATTGTCCCCATGGAGATTGGTAACACTCAGTTAGCCACCTCAGCAAA
GAGCAAGCAGCGACTACAAGATATTCGTAACAACGCTTGCTTCAAGTGCC
ATAAGCCGGgggatcgtGGTTGGATTTCTCATCGGTTGTTCAAGGACTCC
TACAGTAATTCGCAGCAGTCGTCGAAGTTGTCCGCAAGACGATACGGTCC
GTTTAAGATTCTGGAGCTTGTTGGGCGAAATGCGGTCCGTCTGCAGCTTC
CAGCGCACATGCGAATTCACCCTGTGATTCATGTGTCGCATACGAAGCCG
CACCGAGAGCAGCCGCGAGAAATTGCTCAAGTGGGACGAAGCGTGCCACT
TCCAGTCGATGCTACTGCTGAAGTCCCGTTGTTCAAGGTGGACCGAATTC
TCAAGCATCGTGAGCGCGGTAGAGGCTATCAGTGGCTGGCGCTGATGGAA
AACTCTAGTACACACGAGGCGCAATGGCAGCCAACTCGAGACTGA
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