Ggra902.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra902.t1
Unique NameGgra902.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length361
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000049_piloncontigtig00000049_pilon:198665..199747 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog77586.LPERR01G14890.3
Max annot lvl35493|Streptophyta
Evalue2.71e-48
EggNOG OGs2CMG3@1|root,2QQ97@2759|Eukaryota,37JIU@33090|Viridiplantae,3GHHI@35493|Streptophyta,3KND6@4447|Liliopsida,3I9AN@38820|Poales
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra902Ggra902Gracilaria gracilis GNS1m malegenetig00000049_pilon 198665..199747 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra902.t1.start1Ggra902.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000049_pilon 198665..198667 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra902.t1.CDS1Ggra902.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000049_pilon 198665..199747 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra902.t1.exon1Ggra902.t1.exon1Gracilaria gracilis GNS1m maleexontig00000049_pilon 198665..199747 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra902.t1.stop1Ggra902.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000049_pilon 199745..199747 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra902.t1Ggra902.t1Gracilaria gracilis GNS1m malepolypeptidetig00000049_pilon 198665..199747 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra902.t1 ID=Ggra902.t1|Name=Ggra902.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=361bp
MSTATATTAATAAAAVPPSRTPFQQRLQPRRRRKAALLLLLPLTGVFALL
SISLDAPSLISWPTTRARARDLADATCASRDAAPHGGDCQALGEARRPQW
ACTHAMQRAIPEFTRLYDARPVRNNTGGVMFDHAFALWYTLRMERPAVVI
ESGAFKGLGTWIIRSALPHARIFSLDPAREARRLPGVEYLTAERFQDFAR
VDWRAKGVRADDALVFLDDHQSSFRRMFADNAHGFRRFIAEDNYDFLQGD
NMSLKWVCERERRRLWRGEVRDNFGKNVSRQSWREHVRLGDRLKRSLKTY
YEFPPVAAVALTRQTRYDARRATPPIVQHARFYEQHLAPYGRQQFAMYTH
FCFVELRAQA*
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spliced messenger RNA

>Ggra902.t1 ID=Ggra902.t1|Name=Ggra902.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1083bp|location=Sequence derived from alignment at tig00000049_pilon:198665..199747+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
atgtccaccgccaccgccaccaccgccgccaccgccgcagccgccgtacc
gccgtcacggacgccattccagcagcggctgcagccgAGGCGGCGCCGGA
AGGCGGCGCTGCTGCTGCTGCTGCCGCTGACGGGCGTGTTCGCGCTGCTG
TCCATCAGCCTGGACGCGCCGTCGCTCATCAGCTGGCCCACAACGCGCGC
GCGCGCGCGCGACCTCGCGGACGCAACCTGCGCCAGCCGGGACGCGGCGC
CGCACGGCGGCGACTGCCAGGCGCTCGGCGAGGCGCGCCGCCCACAATGG
GCGTGCACGCACGCGATGCAGCGCGCCATACCCGAGTTCACGCGGCTGTA
CGACGCGCGGCCCGTGCGAAACAACACGGGCGGCGTGATGTTCGACCACG
CCTTCGCGCTGTGGTACACGCTGCGCATGGAGCGACCCGCCGTGGTGATT
GAGAGCGGCGCCTTCAAGGGGCTTGGCACGTGGATCATCCGCAGCGCGCT
GCCGCACGCGCGCATCTTCTCGCTGGACCCTGCGCGCGAGGCGCGCCGAC
TGCCCGGCGTGGAGTACCTCACGGCGGAGCGCTTCCAGGACTTTGCGCGC
GTGGACTGGCGCGCAAAAGGCGTGCGCGCGGACGACGCGCTGGTGTTTCT
GGACGACCATCAGAGCTCGTTTCGACGCATGTTCGCGGACAACGCGCACG
GCTTTCGGCGCTTCATCGCGGAGGACAACTACGACTTTCTGCAGGGCGAC
AACATGAGCCTCAAGTGGGTGTGCGAGCGCGAGCGCCGCCGGCTGTGGCG
CGGCGAGGTGCGCGACAACTTTGGAAAGAACGTGTCCAGACAGAGCTGGC
GCGAGCATGTGCGGCTGGGCGATCGGCTCAAGAGGTCGCTCAAGACGTAT
TACGAGTTCCCGCCTGTTGCCGCCGTGGCGCTGACGCGCCAGACGCGCTA
CGACGCGCGCCGCGCCACGCCGCCCATTGTGCAGCACGCGCGCTTCTATG
AGCAGCACTTGGCGCCGTACGGACGCCAGCAATTTGCCATGTACACGCAC
TTTTGCTTCGTCGAGCTGCGGGCGCAGGCGTGA
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protein sequence of Ggra902.t1

>Ggra902.t1 ID=Ggra902.t1|Name=Ggra902.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=361bp
MSTATATTAATAAAAVPPSRTPFQQRLQPRRRRKAALLLLLPLTGVFALL
SISLDAPSLISWPTTRARARDLADATCASRDAAPHGGDCQALGEARRPQW
ACTHAMQRAIPEFTRLYDARPVRNNTGGVMFDHAFALWYTLRMERPAVVI
ESGAFKGLGTWIIRSALPHARIFSLDPAREARRLPGVEYLTAERFQDFAR
VDWRAKGVRADDALVFLDDHQSSFRRMFADNAHGFRRFIAEDNYDFLQGD
NMSLKWVCERERRRLWRGEVRDNFGKNVSRQSWREHVRLGDRLKRSLKTY
YEFPPVAAVALTRQTRYDARRATPPIVQHARFYEQHLAPYGRQQFAMYTH
FCFVELRAQA*
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mRNA from alignment at tig00000049_pilon:198665..199747+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra902.t1 ID=Ggra902.t1|Name=Ggra902.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1083bp|location=Sequence derived from alignment at tig00000049_pilon:198665..199747+ (Gracilaria gracilis GNS1m male)
atgtccaccgccaccgccaccaccgccgccaccgccgcagccgccgtacc
gccgtcacggacgccattccagcagcggctgcagccgAGGCGGCGCCGGA
AGGCGGCGCTGCTGCTGCTGCTGCCGCTGACGGGCGTGTTCGCGCTGCTG
TCCATCAGCCTGGACGCGCCGTCGCTCATCAGCTGGCCCACAACGCGCGC
GCGCGCGCGCGACCTCGCGGACGCAACCTGCGCCAGCCGGGACGCGGCGC
CGCACGGCGGCGACTGCCAGGCGCTCGGCGAGGCGCGCCGCCCACAATGG
GCGTGCACGCACGCGATGCAGCGCGCCATACCCGAGTTCACGCGGCTGTA
CGACGCGCGGCCCGTGCGAAACAACACGGGCGGCGTGATGTTCGACCACG
CCTTCGCGCTGTGGTACACGCTGCGCATGGAGCGACCCGCCGTGGTGATT
GAGAGCGGCGCCTTCAAGGGGCTTGGCACGTGGATCATCCGCAGCGCGCT
GCCGCACGCGCGCATCTTCTCGCTGGACCCTGCGCGCGAGGCGCGCCGAC
TGCCCGGCGTGGAGTACCTCACGGCGGAGCGCTTCCAGGACTTTGCGCGC
GTGGACTGGCGCGCAAAAGGCGTGCGCGCGGACGACGCGCTGGTGTTTCT
GGACGACCATCAGAGCTCGTTTCGACGCATGTTCGCGGACAACGCGCACG
GCTTTCGGCGCTTCATCGCGGAGGACAACTACGACTTTCTGCAGGGCGAC
AACATGAGCCTCAAGTGGGTGTGCGAGCGCGAGCGCCGCCGGCTGTGGCG
CGGCGAGGTGCGCGACAACTTTGGAAAGAACGTGTCCAGACAGAGCTGGC
GCGAGCATGTGCGGCTGGGCGATCGGCTCAAGAGGTCGCTCAAGACGTAT
TACGAGTTCCCGCCTGTTGCCGCCGTGGCGCTGACGCGCCAGACGCGCTA
CGACGCGCGCCGCGCCACGCCGCCCATTGTGCAGCACGCGCGCTTCTATG
AGCAGCACTTGGCGCCGTACGGACGCCAGCAATTTGCCATGTACACGCAC
TTTTGCTTCGTCGAGCTGCGGGCGCAGGCGTGA
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Coding sequence (CDS) from alignment at tig00000049_pilon:198665..199747+

>Ggra902.t1 ID=Ggra902.t1|Name=Ggra902.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1083bp|location=Sequence derived from alignment at tig00000049_pilon:198665..199747+ (Gracilaria gracilis GNS1m male)
atgtccaccgccaccgccaccaccgccgccaccgccgcagccgccgtacc
gccgtcacggacgccattccagcagcggctgcagccgAGGCGGCGCCGGA
AGGCGGCGCTGCTGCTGCTGCTGCCGCTGACGGGCGTGTTCGCGCTGCTG
TCCATCAGCCTGGACGCGCCGTCGCTCATCAGCTGGCCCACAACGCGCGC
GCGCGCGCGCGACCTCGCGGACGCAACCTGCGCCAGCCGGGACGCGGCGC
CGCACGGCGGCGACTGCCAGGCGCTCGGCGAGGCGCGCCGCCCACAATGG
GCGTGCACGCACGCGATGCAGCGCGCCATACCCGAGTTCACGCGGCTGTA
CGACGCGCGGCCCGTGCGAAACAACACGGGCGGCGTGATGTTCGACCACG
CCTTCGCGCTGTGGTACACGCTGCGCATGGAGCGACCCGCCGTGGTGATT
GAGAGCGGCGCCTTCAAGGGGCTTGGCACGTGGATCATCCGCAGCGCGCT
GCCGCACGCGCGCATCTTCTCGCTGGACCCTGCGCGCGAGGCGCGCCGAC
TGCCCGGCGTGGAGTACCTCACGGCGGAGCGCTTCCAGGACTTTGCGCGC
GTGGACTGGCGCGCAAAAGGCGTGCGCGCGGACGACGCGCTGGTGTTTCT
GGACGACCATCAGAGCTCGTTTCGACGCATGTTCGCGGACAACGCGCACG
GCTTTCGGCGCTTCATCGCGGAGGACAACTACGACTTTCTGCAGGGCGAC
AACATGAGCCTCAAGTGGGTGTGCGAGCGCGAGCGCCGCCGGCTGTGGCG
CGGCGAGGTGCGCGACAACTTTGGAAAGAACGTGTCCAGACAGAGCTGGC
GCGAGCATGTGCGGCTGGGCGATCGGCTCAAGAGGTCGCTCAAGACGTAT
TACGAGTTCCCGCCTGTTGCCGCCGTGGCGCTGACGCGCCAGACGCGCTA
CGACGCGCGCCGCGCCACGCCGCCCATTGTGCAGCACGCGCGCTTCTATG
AGCAGCACTTGGCGCCGTACGGACGCCAGCAATTTGCCATGTACACGCAC
TTTTGCTTCGTCGAGCTGCGGGCGCAGGCGTGA
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