Ggra9019.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9019.t1
Unique NameGgra9019.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length303
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:1167595..1168503 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9019Ggra9019Gracilaria gracilis GNS1m malegenetig00000860_pilon 1167595..1168503 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9019.t1.start1Ggra9019.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 1167595..1167597 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9019.t1.CDS1Ggra9019.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 1167595..1168503 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9019.t1.exon1Ggra9019.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 1167595..1168503 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9019.t1.stop1Ggra9019.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 1168501..1168503 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9019.t1Ggra9019.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 1167595..1168503 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9019.t1 ID=Ggra9019.t1|Name=Ggra9019.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=303bp
MRSLKPRQYNTRVLLLLLLATPTLYVLLLTNPPESSNAFLPTTRPHLTTF
LSHLHPSVTSLHRLASVKPSLREDALNLALSAWRHSRMPPPVLIAAAVCT
PKLVAGALFRDDVAGVVDVGAGDGHPITYTALKRDAKWVLSFEESAQYDR
LRRLSGAEFHHVRARPGNGAQHPTILQALQTANLTADAHNRHDPSARMYG
TISLLSIKLSRPHPVVQGASALLPSVQNVLLRVDVEDHAEESLQVLFQSG
FECAHLAFSDKRKSHPFFGRNSINFGSLSSFLRFVAKHGGAVDVLCSRRA
ST*
back to top

spliced messenger RNA

>Ggra9019.t1 ID=Ggra9019.t1|Name=Ggra9019.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=909bp|location=Sequence derived from alignment at tig00000860_pilon:1167595..1168503+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCAGCCTCAAGCCTCGACAGTACAACACGCGCGTCCTGTTGTTATT
GCTGCTGGCCACCCCCACCTTATATGTGCTCCTTCTTACCAACCCGCCAG
AGTCATCGAACGCCTTTTTGCCCACCACGCGGCCTCATCTAACAACCTTT
TTAAGCCACCTTCATCCCTCGGTAACTTCTCTTCATCGACTGGCATCAGT
CAAACCGTCACTCCGAGAAGACGCGCTAAACCTCGCTCTTTCTGCATGGC
GGCACTCCAGAATGCCACCGCCAGTCCTCATAGCCGCTGCCGTCTGTACG
CCGAAACTGGTCGCCGGCGCCTTGTTCCGTGACGACGTAGCGGGCGTTGT
GGACGTTGGTGCGGGAGACGGACATCCCATCACATATACTGCCTTGAAGC
GGGATGCAAAATGGGTGCTCTCCTTCGAAGAGAGTGCTCAGTACGACCGT
CTGCGACGCTTGAGCGGCGCCGAATTCCATCACGTGCGTGCGCGACCGGG
CAATGGTGCGCAACATCCAACAATTCTGCAGGCGTTGCAGACGGCGAATC
TTACCGCTGACGCTCACAATCGACACGATCCCTCGGCGCGTATGTACGGG
ACGATTTCGCTGTTGTCCATCAAGCTGTCCCGCCCTCACCCCGTTGTGCA
GGGCGCCTCTGCTTTGTTGCCAAGCGTGCAGAATGTGTTGCTTCGCGTCG
ACGTGGAGGATCATGCGGAGGAGAGTCTACAAGTGCTTTTCCAATCTGGC
TTTGAATGTGCACACCTTGCATTTTCTGACAAGAGAAAGTCACACCCGTT
CTTTGGGAGGAACTCGATCAATTTTGGGTCACTGTCGTCTTTCTTGCGGT
TTGTAGCCAAGCATGGGGGCGCCGTCGATGTGCTCTGCTCCAGACGAGCA
TCTACCTAG
back to top

protein sequence of Ggra9019.t1

>Ggra9019.t1 ID=Ggra9019.t1|Name=Ggra9019.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=303bp
MRSLKPRQYNTRVLLLLLLATPTLYVLLLTNPPESSNAFLPTTRPHLTTF
LSHLHPSVTSLHRLASVKPSLREDALNLALSAWRHSRMPPPVLIAAAVCT
PKLVAGALFRDDVAGVVDVGAGDGHPITYTALKRDAKWVLSFEESAQYDR
LRRLSGAEFHHVRARPGNGAQHPTILQALQTANLTADAHNRHDPSARMYG
TISLLSIKLSRPHPVVQGASALLPSVQNVLLRVDVEDHAEESLQVLFQSG
FECAHLAFSDKRKSHPFFGRNSINFGSLSSFLRFVAKHGGAVDVLCSRRA
ST*
back to top

mRNA from alignment at tig00000860_pilon:1167595..1168503+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9019.t1 ID=Ggra9019.t1|Name=Ggra9019.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=909bp|location=Sequence derived from alignment at tig00000860_pilon:1167595..1168503+ (Gracilaria gracilis GNS1m male)
ATGCGCAGCCTCAAGCCTCGACAGTACAACACGCGCGTCCTGTTGTTATT
GCTGCTGGCCACCCCCACCTTATATGTGCTCCTTCTTACCAACCCGCCAG
AGTCATCGAACGCCTTTTTGCCCACCACGCGGCCTCATCTAACAACCTTT
TTAAGCCACCTTCATCCCTCGGTAACTTCTCTTCATCGACTGGCATCAGT
CAAACCGTCACTCCGAGAAGACGCGCTAAACCTCGCTCTTTCTGCATGGC
GGCACTCCAGAATGCCACCGCCAGTCCTCATAGCCGCTGCCGTCTGTACG
CCGAAACTGGTCGCCGGCGCCTTGTTCCGTGACGACGTAGCGGGCGTTGT
GGACGTTGGTGCGGGAGACGGACATCCCATCACATATACTGCCTTGAAGC
GGGATGCAAAATGGGTGCTCTCCTTCGAAGAGAGTGCTCAGTACGACCGT
CTGCGACGCTTGAGCGGCGCCGAATTCCATCACGTGCGTGCGCGACCGGG
CAATGGTGCGCAACATCCAACAATTCTGCAGGCGTTGCAGACGGCGAATC
TTACCGCTGACGCTCACAATCGACACGATCCCTCGGCGCGTATGTACGGG
ACGATTTCGCTGTTGTCCATCAAGCTGTCCCGCCCTCACCCCGTTGTGCA
GGGCGCCTCTGCTTTGTTGCCAAGCGTGCAGAATGTGTTGCTTCGCGTCG
ACGTGGAGGATCATGCGGAGGAGAGTCTACAAGTGCTTTTCCAATCTGGC
TTTGAATGTGCACACCTTGCATTTTCTGACAAGAGAAAGTCACACCCGTT
CTTTGGGAGGAACTCGATCAATTTTGGGTCACTGTCGTCTTTCTTGCGGT
TTGTAGCCAAGCATGGGGGCGCCGTCGATGTGCTCTGCTCCAGACGAGCA
TCTACCTAG
back to top

Coding sequence (CDS) from alignment at tig00000860_pilon:1167595..1168503+

>Ggra9019.t1 ID=Ggra9019.t1|Name=Ggra9019.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=909bp|location=Sequence derived from alignment at tig00000860_pilon:1167595..1168503+ (Gracilaria gracilis GNS1m male)
ATGCGCAGCCTCAAGCCTCGACAGTACAACACGCGCGTCCTGTTGTTATT
GCTGCTGGCCACCCCCACCTTATATGTGCTCCTTCTTACCAACCCGCCAG
AGTCATCGAACGCCTTTTTGCCCACCACGCGGCCTCATCTAACAACCTTT
TTAAGCCACCTTCATCCCTCGGTAACTTCTCTTCATCGACTGGCATCAGT
CAAACCGTCACTCCGAGAAGACGCGCTAAACCTCGCTCTTTCTGCATGGC
GGCACTCCAGAATGCCACCGCCAGTCCTCATAGCCGCTGCCGTCTGTACG
CCGAAACTGGTCGCCGGCGCCTTGTTCCGTGACGACGTAGCGGGCGTTGT
GGACGTTGGTGCGGGAGACGGACATCCCATCACATATACTGCCTTGAAGC
GGGATGCAAAATGGGTGCTCTCCTTCGAAGAGAGTGCTCAGTACGACCGT
CTGCGACGCTTGAGCGGCGCCGAATTCCATCACGTGCGTGCGCGACCGGG
CAATGGTGCGCAACATCCAACAATTCTGCAGGCGTTGCAGACGGCGAATC
TTACCGCTGACGCTCACAATCGACACGATCCCTCGGCGCGTATGTACGGG
ACGATTTCGCTGTTGTCCATCAAGCTGTCCCGCCCTCACCCCGTTGTGCA
GGGCGCCTCTGCTTTGTTGCCAAGCGTGCAGAATGTGTTGCTTCGCGTCG
ACGTGGAGGATCATGCGGAGGAGAGTCTACAAGTGCTTTTCCAATCTGGC
TTTGAATGTGCACACCTTGCATTTTCTGACAAGAGAAAGTCACACCCGTT
CTTTGGGAGGAACTCGATCAATTTTGGGTCACTGTCGTCTTTCTTGCGGT
TTGTAGCCAAGCATGGGGGCGCCGTCGATGTGCTCTGCTCCAGACGAGCA
TCTACCTAG
back to top