Ggra9014.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9014.t1
Unique NameGgra9014.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length294
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:1152567..1153777 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9014Ggra9014Gracilaria gracilis GNS1m malegenetig00000860_pilon 1152567..1153777 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9014.t1Ggra9014.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 1152567..1153777 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9014.t1.stop1Ggra9014.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 1152567..1152569 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9014.t1.CDS1Ggra9014.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 1152567..1152692 -
Ggra9014.t1.CDS2Ggra9014.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000860_pilon 1152849..1152967 -
Ggra9014.t1.CDS3Ggra9014.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000860_pilon 1153141..1153777 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9014.t1.exon1Ggra9014.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 1152567..1152692 -
Ggra9014.t1.exon2Ggra9014.t1.exon2Gracilaria gracilis GNS1m maleexontig00000860_pilon 1152849..1152967 -
Ggra9014.t1.exon3Ggra9014.t1.exon3Gracilaria gracilis GNS1m maleexontig00000860_pilon 1153141..1153777 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9014.t1.intron1Ggra9014.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000860_pilon 1152693..1152848 -
Ggra9014.t1.intron2Ggra9014.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000860_pilon 1152968..1153140 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9014.t1.start1Ggra9014.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 1153775..1153777 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9014.t1 ID=Ggra9014.t1|Name=Ggra9014.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=294bp
MKTLFATSLLLLFSLALADDEEFVSRRNVERGIYIPRIPFSTRNFRTESC
LLLNGRNVISEPFSFDFEAADTLFACSEKNGPLVTHFPGKLSLSRSEFVC
EKTPLITYNDEETSVDFPPFRLPFVCVEDICVFYKSLGKRVLLSAAILPE
EAPILKEKRDIKVPFLATQVLFDFDNRMVKSFAKNQAHAFNKGVTGSIDL
RAMSYLGIKKAQCRSVLTMIIVDRDKWEPAYFSKLCVTKINLVHPLDFPS
CPLSTSQECRYCVLGQNKMSEQNGKRSEGKDRSAALIVDGSDE*
back to top

spliced messenger RNA

>Ggra9014.t1 ID=Ggra9014.t1|Name=Ggra9014.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=882bp|location=Sequence derived from alignment at tig00000860_pilon:1152567..1153777- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAACCCTCTTCGCCACATCTCTTCTACTACTCTTCAGTTTGGCTCT
AGCCGACGACGAAGAATTTGTGTCTCGCCGTAATGTCGAGAGAGGCATCT
ACATACCAAGAATCCCGTTTAGCACAAGAAACTTCAGAACAGAATCCTGC
CTCCTACTCAACGGAAGGAACGTCATAAGCGAGCCTTTCTCCTTCGACTT
TGAAGCAGCAGACACTCTTTTCGCGTGTTCTGAGAAGAATGGGCCGCTCG
TAACTCACTTTCCAGGAAAGCTCAGTTTGAGCCGTTCAGAGTTTGTGTGC
GAAAAAACTCCGCTGATTACGTACAACGATGAGGAAACTTCTGTAGACTT
TCCACCGTTCCGTCTGCCGTTCGTGTGCGTTGAAGATATTTGCGTGTTCT
ACAAGTCTCTGGGGAAACGAGTACTTCTCTCTGCCGCAATTCTTCCGGAA
GAAGCACCGATACTTAAAGAGAAACGAGACATAAAGGTTCCTTTCCTCGC
CACGCAAGTATTGTTCGACTTTGACAATCGTATGGTTAAGAGCTTCGCGA
AAAACCAAGCTCATGCGTTCAACAAAGGAGTTACAGGTTCAATCGATCTT
CGGGCCATGTCGTACCTCGGAATCAAGAAAGCACAATGTCGAAGTGTGCT
TACTATGATAATCGTTGACCGCGACAAATGGGAACCAGCGTATTTTTCGA
AACTTTGCGTGACGAAGATAAATCTAGTGCACCCGTTAGACTTTCCGTCA
TGTCCATTGTCCACCTCCCAAGAATGTCGCTACTGCGTTTTGGGTCAGAA
CAAGATGAGTGAACAGAATGGAAAACGCAGCGAAGGGAAAGACCGAAGTG
CGGCTCTCATTGTTGACGGCAGCGACGAATAG
back to top

protein sequence of Ggra9014.t1

>Ggra9014.t1 ID=Ggra9014.t1|Name=Ggra9014.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=294bp
MKTLFATSLLLLFSLALADDEEFVSRRNVERGIYIPRIPFSTRNFRTESC
LLLNGRNVISEPFSFDFEAADTLFACSEKNGPLVTHFPGKLSLSRSEFVC
EKTPLITYNDEETSVDFPPFRLPFVCVEDICVFYKSLGKRVLLSAAILPE
EAPILKEKRDIKVPFLATQVLFDFDNRMVKSFAKNQAHAFNKGVTGSIDL
RAMSYLGIKKAQCRSVLTMIIVDRDKWEPAYFSKLCVTKINLVHPLDFPS
CPLSTSQECRYCVLGQNKMSEQNGKRSEGKDRSAALIVDGSDE*
back to top

mRNA from alignment at tig00000860_pilon:1152567..1153777-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9014.t1 ID=Ggra9014.t1|Name=Ggra9014.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1211bp|location=Sequence derived from alignment at tig00000860_pilon:1152567..1153777- (Gracilaria gracilis GNS1m male)
ATGAAAACCCTCTTCGCCACATCTCTTCTACTACTCTTCAGTTTGGCTCT
AGCCGACGACGAAGAATTTGTGTCTCGCCGTAATGTCGAGAGAGGCATCT
ACATACCAAGAATCCCGTTTAGCACAAGAAACTTCAGAACAGAATCCTGC
CTCCTACTCAACGGAAGGAACGTCATAAGCGAGCCTTTCTCCTTCGACTT
TGAAGCAGCAGACACTCTTTTCGCGTGTTCTGAGAAGAATGGGCCGCTCG
TAACTCACTTTCCAGGAAAGCTCAGTTTGAGCCGTTCAGAGTTTGTGTGC
GAAAAAACTCCGCTGATTACGTACAACGATGAGGAAACTTCTGTAGACTT
TCCACCGTTCCGTCTGCCGTTCGTGTGCGTTGAAGATATTTGCGTGTTCT
ACAAGTCTCTGGGGAAACGAGTACTTCTCTCTGCCGCAATTCTTCCGGAA
GAAGCACCGATACTTAAAGAGAAACGAGACATAAAGGTTCCTTTCCTCGC
CACGCAAGTATTGTTCGACTTTGACAATCGTATGGTTAAGAGCTTCGCGA
AAAACCAAGCTCATGCGTTCAACAAAGGAGTTACAGGTTCAATCGATCTT
CGGGCCATGTCGTACCTCGGAATCAAGAAAGCACAATGTAAGTTTCCGAG
GGTCTCTTGCACCTGCAGCAGAAGGTGAAATCGAGTATACTTGATTTCGT
GGATGTAATTATGTACAATGAGAGACAAGGTGGTACAATGGTTTCGCACC
ATTGATAGTGTGTGTTTGACCAGATCCAAAGATTCTTGTAGATGGTTGAA
TGGGGTACAGGTCGAAGTGTGCTTACTATGATAATCGTTGACCGCGACAA
ATGGGAACCAGCGTATTTTTCGAAACTTTGCGTGACGAAGATAAATCTAG
TGCACCCGTTAGACTTTCCGTCATGTCCAGTACGTTAAGCGCGAGCGATA
TAGCCAGAGAGATAGGAAAGCATAGAGAACTGAACTCAGTCGAGGAACGC
TTTCTGTACGACACGCCTCGTTTCAAAACTGTTTCGAAGCAGAATTCTCC
TACGACTAAACCCTTAGCTTTGGCTTTGTCCCTAGTTGTCCACCTCCCAA
GAATGTCGCTACTGCGTTTTGGGTCAGAACAAGATGAGTGAACAGAATGG
AAAACGCAGCGAAGGGAAAGACCGAAGTGCGGCTCTCATTGTTGACGGCA
GCGACGAATAG
back to top

Coding sequence (CDS) from alignment at tig00000860_pilon:1152567..1153777-

>Ggra9014.t1 ID=Ggra9014.t1|Name=Ggra9014.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=882bp|location=Sequence derived from alignment at tig00000860_pilon:1152567..1153777- (Gracilaria gracilis GNS1m male)
ATGAAAACCCTCTTCGCCACATCTCTTCTACTACTCTTCAGTTTGGCTCT
AGCCGACGACGAAGAATTTGTGTCTCGCCGTAATGTCGAGAGAGGCATCT
ACATACCAAGAATCCCGTTTAGCACAAGAAACTTCAGAACAGAATCCTGC
CTCCTACTCAACGGAAGGAACGTCATAAGCGAGCCTTTCTCCTTCGACTT
TGAAGCAGCAGACACTCTTTTCGCGTGTTCTGAGAAGAATGGGCCGCTCG
TAACTCACTTTCCAGGAAAGCTCAGTTTGAGCCGTTCAGAGTTTGTGTGC
GAAAAAACTCCGCTGATTACGTACAACGATGAGGAAACTTCTGTAGACTT
TCCACCGTTCCGTCTGCCGTTCGTGTGCGTTGAAGATATTTGCGTGTTCT
ACAAGTCTCTGGGGAAACGAGTACTTCTCTCTGCCGCAATTCTTCCGGAA
GAAGCACCGATACTTAAAGAGAAACGAGACATAAAGGTTCCTTTCCTCGC
CACGCAAGTATTGTTCGACTTTGACAATCGTATGGTTAAGAGCTTCGCGA
AAAACCAAGCTCATGCGTTCAACAAAGGAGTTACAGGTTCAATCGATCTT
CGGGCCATGTCGTACCTCGGAATCAAGAAAGCACAATGTCGAAGTGTGCT
TACTATGATAATCGTTGACCGCGACAAATGGGAACCAGCGTATTTTTCGA
AACTTTGCGTGACGAAGATAAATCTAGTGCACCCGTTAGACTTTCCGTCA
TGTCCATTGTCCACCTCCCAAGAATGTCGCTACTGCGTTTTGGGTCAGAA
CAAGATGAGTGAACAGAATGGAAAACGCAGCGAAGGGAAAGACCGAAGTG
CGGCTCTCATTGTTGACGGCAGCGACGAATAG
back to top