Ggra9013.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9013.t1
Unique NameGgra9013.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length190
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:1149749..1150318 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9013Ggra9013Gracilaria gracilis GNS1m malegenetig00000860_pilon 1149749..1150318 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9013.t1.stop1Ggra9013.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 1149749..1149751 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9013.t1.CDS1Ggra9013.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 1149749..1150318 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9013.t1.exon1Ggra9013.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 1149749..1150318 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9013.t1.start1Ggra9013.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 1150316..1150318 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9013.t1Ggra9013.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 1149749..1150318 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9013.t1 ID=Ggra9013.t1|Name=Ggra9013.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=190bp
MPFSPPGGPSNTVNQPCLLVDNGNVLDQTFPTTYEAAAILLTCSSKQGNV
VTHYSGKRSSVSSTIICDNTPLISYDEQTDRPTISAAGMPFECENGLCVF
YQAVGNQVLLSALILQDEVQPLQGGARPVPFLRTKLMFGFNGLLQTFAKR
VLSAFMQNVSGEIDLRAIAFLATSGSTCSFPQAPCFCQS*
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spliced messenger RNA

>Ggra9013.t1 ID=Ggra9013.t1|Name=Ggra9013.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=570bp|location=Sequence derived from alignment at tig00000860_pilon:1149749..1150318- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTTTCTCCCCACCGGGCGGGCCTTCCAACACCGTCAATCAACCCTG
TCTACTCGTCGATAATGGAAACGTTCTGGACCAAACCTTCCCTACAACGT
ACGAAGCAGCGGCCATCCTTCTGACTTGTTCGTCCAAACAGGGAAACGTC
GTAACTCATTACTCTGGTAAACGAAGCTCTGTTTCGTCTACGATTATCTG
CGACAACACGCCGCTAATCTCATACGACGAGCAGACGGATCGTCCCACAA
TTTCTGCCGCCGGAATGCCTTTCGAATGCGAGAATGGACTGTGTGTGTTT
TACCAGGCTGTTGGCAACCAGGTGTTGCTTTCAGCTCTCATTCTTCAGGA
TGAGGTACAACCGCTCCAGGGTGGAGCGAGACCAGTTCCTTTCTTGAGGA
CAAAGCTAATGTTTGGATTCAACGGTTTGCTTCAAACTTTTGCCAAACGC
GTGCTTTCCGCGTTTATGCAGAACGTGAGCGGAGAGATTGATCTGAGGGC
CATTGCATTTTTGGCCACTTCTGGCAGCACATGTTCGTTCCCCCAGGCTC
CGTGCTTTTGTCAGAGTTAG
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protein sequence of Ggra9013.t1

>Ggra9013.t1 ID=Ggra9013.t1|Name=Ggra9013.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=190bp
MPFSPPGGPSNTVNQPCLLVDNGNVLDQTFPTTYEAAAILLTCSSKQGNV
VTHYSGKRSSVSSTIICDNTPLISYDEQTDRPTISAAGMPFECENGLCVF
YQAVGNQVLLSALILQDEVQPLQGGARPVPFLRTKLMFGFNGLLQTFAKR
VLSAFMQNVSGEIDLRAIAFLATSGSTCSFPQAPCFCQS*
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mRNA from alignment at tig00000860_pilon:1149749..1150318-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9013.t1 ID=Ggra9013.t1|Name=Ggra9013.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=570bp|location=Sequence derived from alignment at tig00000860_pilon:1149749..1150318- (Gracilaria gracilis GNS1m male)
ATGCCTTTCTCCCCACCGGGCGGGCCTTCCAACACCGTCAATCAACCCTG
TCTACTCGTCGATAATGGAAACGTTCTGGACCAAACCTTCCCTACAACGT
ACGAAGCAGCGGCCATCCTTCTGACTTGTTCGTCCAAACAGGGAAACGTC
GTAACTCATTACTCTGGTAAACGAAGCTCTGTTTCGTCTACGATTATCTG
CGACAACACGCCGCTAATCTCATACGACGAGCAGACGGATCGTCCCACAA
TTTCTGCCGCCGGAATGCCTTTCGAATGCGAGAATGGACTGTGTGTGTTT
TACCAGGCTGTTGGCAACCAGGTGTTGCTTTCAGCTCTCATTCTTCAGGA
TGAGGTACAACCGCTCCAGGGTGGAGCGAGACCAGTTCCTTTCTTGAGGA
CAAAGCTAATGTTTGGATTCAACGGTTTGCTTCAAACTTTTGCCAAACGC
GTGCTTTCCGCGTTTATGCAGAACGTGAGCGGAGAGATTGATCTGAGGGC
CATTGCATTTTTGGCCACTTCTGGCAGCACATGTTCGTTCCCCCAGGCTC
CGTGCTTTTGTCAGAGTTAG
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Coding sequence (CDS) from alignment at tig00000860_pilon:1149749..1150318-

>Ggra9013.t1 ID=Ggra9013.t1|Name=Ggra9013.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=570bp|location=Sequence derived from alignment at tig00000860_pilon:1149749..1150318- (Gracilaria gracilis GNS1m male)
ATGCCTTTCTCCCCACCGGGCGGGCCTTCCAACACCGTCAATCAACCCTG
TCTACTCGTCGATAATGGAAACGTTCTGGACCAAACCTTCCCTACAACGT
ACGAAGCAGCGGCCATCCTTCTGACTTGTTCGTCCAAACAGGGAAACGTC
GTAACTCATTACTCTGGTAAACGAAGCTCTGTTTCGTCTACGATTATCTG
CGACAACACGCCGCTAATCTCATACGACGAGCAGACGGATCGTCCCACAA
TTTCTGCCGCCGGAATGCCTTTCGAATGCGAGAATGGACTGTGTGTGTTT
TACCAGGCTGTTGGCAACCAGGTGTTGCTTTCAGCTCTCATTCTTCAGGA
TGAGGTACAACCGCTCCAGGGTGGAGCGAGACCAGTTCCTTTCTTGAGGA
CAAAGCTAATGTTTGGATTCAACGGTTTGCTTCAAACTTTTGCCAAACGC
GTGCTTTCCGCGTTTATGCAGAACGTGAGCGGAGAGATTGATCTGAGGGC
CATTGCATTTTTGGCCACTTCTGGCAGCACATGTTCGTTCCCCCAGGCTC
CGTGCTTTTGTCAGAGTTAG
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