Ggra9011.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9011.t1
Unique NameGgra9011.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length216
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:1140582..1141229 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9011Ggra9011Gracilaria gracilis GNS1m malegenetig00000860_pilon 1140582..1141229 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9011.t1.stop1Ggra9011.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 1140582..1140584 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9011.t1.CDS1Ggra9011.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 1140582..1141229 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9011.t1.exon1Ggra9011.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 1140582..1141229 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9011.t1.start1Ggra9011.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 1141227..1141229 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9011.t1Ggra9011.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 1140582..1141229 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9011.t1 ID=Ggra9011.t1|Name=Ggra9011.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=216bp
MATPSKALFSILLVIFSCTYAQARLLASPEAENGNGAEEPCLVVNGIDVL
DDKFDATFRGVATVFRCATVVGTTISLFAGNTSLETFETVCGDTALISFI
EDEPLVNMALSGLPLICIEEKCVAYVIMGQEVLLSAAIIPSEVEEITTSG
IEVPFLKTTVLQEFDDGMGEQFARAFIGALAMGTTDPLILRVLVFLGSSE
TTCLFADEPDAQALA*
back to top

spliced messenger RNA

>Ggra9011.t1 ID=Ggra9011.t1|Name=Ggra9011.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=648bp|location=Sequence derived from alignment at tig00000860_pilon:1140582..1141229- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCACTCCCTCAAAGGCTCTGTTCTCTATTCTCCTGGTCATCTTTTC
CTGCACCTATGCCCAGGCTAGACTGCTGGCATCCCCTGAGGCTGAGAATG
GGAATGGTGCCGAAGAACCGTGCTTGGTTGTGAACGGCATAGATGTTTTG
GATGACAAGTTTGATGCTACTTTTCGCGGAGTAGCAACCGTATTCAGATG
TGCAACAGTAGTTGGCACTACAATCAGCCTCTTCGCGGGAAACACGTCAC
TAGAGACATTTGAAACTGTTTGCGGCGATACTGCTTTAATATCCTTCATT
GAGGATGAACCTCTAGTGAATATGGCGTTATCCGGGCTTCCGTTAATCTG
TATTGAAGAAAAATGTGTTGCGTATGTGATCATGGGACAAGAGGTACTAC
TGTCAGCTGCAATTATACCAAGTGAGGTGGAAGAGATAACAACATCTGGG
ATTGAGGTCCCTTTCTTGAAGACGACAGTTCTTCAGGAATTCGACGACGG
AATGGGTGAACAATTTGCTCGAGCGTTTATTGGAGCGCTTGCAATGGGTA
CTACTGATCCTCTTATCCTTCGTGTCCTGGTTTTCCTCGGATCCTCAGAG
ACGACTTGCTTGTTCGCAGACGAGCCGGACGCTCAAGCATTGGCGTGA
back to top

protein sequence of Ggra9011.t1

>Ggra9011.t1 ID=Ggra9011.t1|Name=Ggra9011.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=216bp
MATPSKALFSILLVIFSCTYAQARLLASPEAENGNGAEEPCLVVNGIDVL
DDKFDATFRGVATVFRCATVVGTTISLFAGNTSLETFETVCGDTALISFI
EDEPLVNMALSGLPLICIEEKCVAYVIMGQEVLLSAAIIPSEVEEITTSG
IEVPFLKTTVLQEFDDGMGEQFARAFIGALAMGTTDPLILRVLVFLGSSE
TTCLFADEPDAQALA*
back to top

mRNA from alignment at tig00000860_pilon:1140582..1141229-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9011.t1 ID=Ggra9011.t1|Name=Ggra9011.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=648bp|location=Sequence derived from alignment at tig00000860_pilon:1140582..1141229- (Gracilaria gracilis GNS1m male)
ATGGCCACTCCCTCAAAGGCTCTGTTCTCTATTCTCCTGGTCATCTTTTC
CTGCACCTATGCCCAGGCTAGACTGCTGGCATCCCCTGAGGCTGAGAATG
GGAATGGTGCCGAAGAACCGTGCTTGGTTGTGAACGGCATAGATGTTTTG
GATGACAAGTTTGATGCTACTTTTCGCGGAGTAGCAACCGTATTCAGATG
TGCAACAGTAGTTGGCACTACAATCAGCCTCTTCGCGGGAAACACGTCAC
TAGAGACATTTGAAACTGTTTGCGGCGATACTGCTTTAATATCCTTCATT
GAGGATGAACCTCTAGTGAATATGGCGTTATCCGGGCTTCCGTTAATCTG
TATTGAAGAAAAATGTGTTGCGTATGTGATCATGGGACAAGAGGTACTAC
TGTCAGCTGCAATTATACCAAGTGAGGTGGAAGAGATAACAACATCTGGG
ATTGAGGTCCCTTTCTTGAAGACGACAGTTCTTCAGGAATTCGACGACGG
AATGGGTGAACAATTTGCTCGAGCGTTTATTGGAGCGCTTGCAATGGGTA
CTACTGATCCTCTTATCCTTCGTGTCCTGGTTTTCCTCGGATCCTCAGAG
ACGACTTGCTTGTTCGCAGACGAGCCGGACGCTCAAGCATTGGCGTGA
back to top

Coding sequence (CDS) from alignment at tig00000860_pilon:1140582..1141229-

>Ggra9011.t1 ID=Ggra9011.t1|Name=Ggra9011.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=648bp|location=Sequence derived from alignment at tig00000860_pilon:1140582..1141229- (Gracilaria gracilis GNS1m male)
ATGGCCACTCCCTCAAAGGCTCTGTTCTCTATTCTCCTGGTCATCTTTTC
CTGCACCTATGCCCAGGCTAGACTGCTGGCATCCCCTGAGGCTGAGAATG
GGAATGGTGCCGAAGAACCGTGCTTGGTTGTGAACGGCATAGATGTTTTG
GATGACAAGTTTGATGCTACTTTTCGCGGAGTAGCAACCGTATTCAGATG
TGCAACAGTAGTTGGCACTACAATCAGCCTCTTCGCGGGAAACACGTCAC
TAGAGACATTTGAAACTGTTTGCGGCGATACTGCTTTAATATCCTTCATT
GAGGATGAACCTCTAGTGAATATGGCGTTATCCGGGCTTCCGTTAATCTG
TATTGAAGAAAAATGTGTTGCGTATGTGATCATGGGACAAGAGGTACTAC
TGTCAGCTGCAATTATACCAAGTGAGGTGGAAGAGATAACAACATCTGGG
ATTGAGGTCCCTTTCTTGAAGACGACAGTTCTTCAGGAATTCGACGACGG
AATGGGTGAACAATTTGCTCGAGCGTTTATTGGAGCGCTTGCAATGGGTA
CTACTGATCCTCTTATCCTTCGTGTCCTGGTTTTCCTCGGATCCTCAGAG
ACGACTTGCTTGTTCGCAGACGAGCCGGACGCTCAAGCATTGGCGTGA
back to top