Ggra9008.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9008.t1
Unique NameGgra9008.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length498
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:1130004..1131497 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707431.1
PFAMsPMT,PMT_4TMC,RRM_1
Max annot lvl2759|Eukaryota
KEGG rclassRC00005,RC00059,RC00397
KEGG koko:K00728
KEGG ReactionR04072,R07620,R11399
KEGG Pathwayko00514,ko00515,ko01100,map00514,map00515,map01100
Evalue2.01e-113
EggNOG OGsCOG1928@1|root,KOG3359@2759|Eukaryota
EC2.4.1.109
Descriptiondolichyl-phosphate-mannose-protein mannosyltransferase activity
COG categoryO
CAZyGT39
BRITEko00000,ko00001,ko01000,ko01003
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9008Ggra9008Gracilaria gracilis GNS1m malegenetig00000860_pilon 1130004..1131497 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9008.t1.start1Ggra9008.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 1130004..1130006 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9008.t1.CDS1Ggra9008.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 1130004..1131497 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9008.t1.exon1Ggra9008.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 1130004..1131497 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9008.t1.stop1Ggra9008.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 1131495..1131497 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9008.t1Ggra9008.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 1130004..1131497 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9008.t1 ID=Ggra9008.t1|Name=Ggra9008.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=498bp
MWPRAQLSKPRRAPYPHYAPDGAHGALGVDLALGALLFVLSLALRCFGLG
LPPAIVFDEAHFGSFVDHILARTAYFDIHPPLGKFTLAAAGWFLGYRVQP
AFRYDAIGREYHRVLFLALRIVSVLFGAFTNVFMYLTARLLPISRLCSVF
CALLFMFDSLNVIESRLILMEAQLMFYLVLSLYCALRLWKTPPTHLRSFF
FWMTCTAFASSCAVSVKWTALATPALIAIVSFFALHFLSTPLAVWQCVWM
LMVAVSWYLFLFHVHFQRIIHTGPGAPFLMEQFRNTLIGDPSYNATAKRP
SFMRMVLQINRMMFAANAAVAERHTWETYWYQWIVNWRGLLMFTRQTDTS
HWQIVYLLCNPVVCICCAVFVLVFATLRMLCIRYPTLIFGRDLFSYHHSR
RFFGAGTFLLFGWLLNLLPYILVDRSAFVYHYLPGLMYAQLLSALVVDQL
RFRVKVSVVVSLSLAVIVTYIHFAPWIYCIPLDAHQHAKRRWWGRWD*
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spliced messenger RNA

>Ggra9008.t1 ID=Ggra9008.t1|Name=Ggra9008.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1494bp|location=Sequence derived from alignment at tig00000860_pilon:1130004..1131497+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGCCGCGCGCGCAGCTCAGCAAGCCGCGCCGCGCACCGTATCCGCA
CTACGCGCCCGATGGCGCACATGGCgcgcttggcgtggacctggcgctag
gcgcgctgctgttcgtgctctcgctggcgctgcgctgCTTCGGTCTCGGC
TTGCCGCCGGCCATCGTGTTCGATGAGGCGCACTTCGGCTCGTTTGTGGA
TCATATTCTCGCCCGTACGGCGTACTTTGACATTCATCCGCCGCTGGGCA
AGTTTACCTTGGCCGCCGCCGGCTGGTTTCTGGGCTACCGCGTGCAGCCT
GCTTTCCGCTACGACGCCATTGGGCGCGAGTATCACCGTGTGTTGTTTCT
CGCGTTGAGGATTGTCTCCGTCTTGTTTGGCGCTTTCACCAATGTGTTCA
TGTACCTTACGGCCAGGCTGCTGCCCATATCCAGGCTTTGTTCCGTCTTT
TGTGCTCTCTTGTTTATGTTTGACTCACTCAATGTCATCGAGAGTCGTCT
CATTCTTATGGAAGCTCAGTTGATGTTTTATCTTGTACTTTCCTTGTATT
GCGCCTTGAGGCTGTGGAAAACGCCTCCAACACACCTACGGTCCTTCTTC
TTCTGGATGACTTGCACCGCCTTTGCCTCTTCATGTGCCGTTTCTGTCAA
GTGGACTGCCCTGGCCACACCGGCGCTCATAGCCATTGTATCATTCTTTG
CCTTGCATTTCTTGAGCACGCCTCTTGCCGTTTGGCAATGTGTGTGGATG
CTGATGGTTGCTGTGTCTTGGTACTTGTTTTTGTTTCATGTTCATTTTCA
ACGTATCATTCATACGGGACCGGGCGCCCCGTTTCTTATGGAACAGTTTC
GCAACACGCTCATTGGAGACCCTAGCTACAACGCTACCGCCAAACGTCCT
TCGTTCATGCGCATGGTGTTGCAGATCAATCGCATGATGTTTGCTGCAAA
TGCTGCCGTCGCTGAGCGCCATACGTGGGAGACGTACTGGTATCAATGGA
TTGTCAATTGGAGAGGACTGCTCATGTTTACGAGGCAGACTGATACATCG
CATTGGCAAATTGTTTACCTACTTTGTAACCCCGTCGTGTGCATATGTTG
CGCTGTGTTTGTTCTCGTTTTTGCAACCCTTCGCATGCTTTGCATCCGCT
ATCCAACTCTGATATTTGGACGAGATCTGTTTTCTTACCATCACAGCCGA
AGATTCTTTGGCGCGGGCACGTTCTTATTGTTTGGCTGGTTGCTCAATCT
TTTACCATACATTCTCGTTGATCGATCCGCGTTTGTGTATCATTATTTAC
CTGGTTTGATGTATGCTCAGTTGTTGAGTGCTCTTGTTGTAGACCAGTTG
AGATTTCGTGTCAAGGTTTCGGTTGTTGTGAGCCTTAGTTTGGCCGTCAT
TGTTACTTACATCCATTTCGCACCCTGGATATATTGCATACCGCTTGATG
CTCATCAGCATGCAAAACGACGGTGGTGGGGACGTTGGGATTAA
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protein sequence of Ggra9008.t1

>Ggra9008.t1 ID=Ggra9008.t1|Name=Ggra9008.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=498bp
MWPRAQLSKPRRAPYPHYAPDGAHGALGVDLALGALLFVLSLALRCFGLG
LPPAIVFDEAHFGSFVDHILARTAYFDIHPPLGKFTLAAAGWFLGYRVQP
AFRYDAIGREYHRVLFLALRIVSVLFGAFTNVFMYLTARLLPISRLCSVF
CALLFMFDSLNVIESRLILMEAQLMFYLVLSLYCALRLWKTPPTHLRSFF
FWMTCTAFASSCAVSVKWTALATPALIAIVSFFALHFLSTPLAVWQCVWM
LMVAVSWYLFLFHVHFQRIIHTGPGAPFLMEQFRNTLIGDPSYNATAKRP
SFMRMVLQINRMMFAANAAVAERHTWETYWYQWIVNWRGLLMFTRQTDTS
HWQIVYLLCNPVVCICCAVFVLVFATLRMLCIRYPTLIFGRDLFSYHHSR
RFFGAGTFLLFGWLLNLLPYILVDRSAFVYHYLPGLMYAQLLSALVVDQL
RFRVKVSVVVSLSLAVIVTYIHFAPWIYCIPLDAHQHAKRRWWGRWD*
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mRNA from alignment at tig00000860_pilon:1130004..1131497+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9008.t1 ID=Ggra9008.t1|Name=Ggra9008.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1494bp|location=Sequence derived from alignment at tig00000860_pilon:1130004..1131497+ (Gracilaria gracilis GNS1m male)
ATGTGGCCGCGCGCGCAGCTCAGCAAGCCGCGCCGCGCACCGTATCCGCA
CTACGCGCCCGATGGCGCACATGGCgcgcttggcgtggacctggcgctag
gcgcgctgctgttcgtgctctcgctggcgctgcgctgCTTCGGTCTCGGC
TTGCCGCCGGCCATCGTGTTCGATGAGGCGCACTTCGGCTCGTTTGTGGA
TCATATTCTCGCCCGTACGGCGTACTTTGACATTCATCCGCCGCTGGGCA
AGTTTACCTTGGCCGCCGCCGGCTGGTTTCTGGGCTACCGCGTGCAGCCT
GCTTTCCGCTACGACGCCATTGGGCGCGAGTATCACCGTGTGTTGTTTCT
CGCGTTGAGGATTGTCTCCGTCTTGTTTGGCGCTTTCACCAATGTGTTCA
TGTACCTTACGGCCAGGCTGCTGCCCATATCCAGGCTTTGTTCCGTCTTT
TGTGCTCTCTTGTTTATGTTTGACTCACTCAATGTCATCGAGAGTCGTCT
CATTCTTATGGAAGCTCAGTTGATGTTTTATCTTGTACTTTCCTTGTATT
GCGCCTTGAGGCTGTGGAAAACGCCTCCAACACACCTACGGTCCTTCTTC
TTCTGGATGACTTGCACCGCCTTTGCCTCTTCATGTGCCGTTTCTGTCAA
GTGGACTGCCCTGGCCACACCGGCGCTCATAGCCATTGTATCATTCTTTG
CCTTGCATTTCTTGAGCACGCCTCTTGCCGTTTGGCAATGTGTGTGGATG
CTGATGGTTGCTGTGTCTTGGTACTTGTTTTTGTTTCATGTTCATTTTCA
ACGTATCATTCATACGGGACCGGGCGCCCCGTTTCTTATGGAACAGTTTC
GCAACACGCTCATTGGAGACCCTAGCTACAACGCTACCGCCAAACGTCCT
TCGTTCATGCGCATGGTGTTGCAGATCAATCGCATGATGTTTGCTGCAAA
TGCTGCCGTCGCTGAGCGCCATACGTGGGAGACGTACTGGTATCAATGGA
TTGTCAATTGGAGAGGACTGCTCATGTTTACGAGGCAGACTGATACATCG
CATTGGCAAATTGTTTACCTACTTTGTAACCCCGTCGTGTGCATATGTTG
CGCTGTGTTTGTTCTCGTTTTTGCAACCCTTCGCATGCTTTGCATCCGCT
ATCCAACTCTGATATTTGGACGAGATCTGTTTTCTTACCATCACAGCCGA
AGATTCTTTGGCGCGGGCACGTTCTTATTGTTTGGCTGGTTGCTCAATCT
TTTACCATACATTCTCGTTGATCGATCCGCGTTTGTGTATCATTATTTAC
CTGGTTTGATGTATGCTCAGTTGTTGAGTGCTCTTGTTGTAGACCAGTTG
AGATTTCGTGTCAAGGTTTCGGTTGTTGTGAGCCTTAGTTTGGCCGTCAT
TGTTACTTACATCCATTTCGCACCCTGGATATATTGCATACCGCTTGATG
CTCATCAGCATGCAAAACGACGGTGGTGGGGACGTTGGGATTAA
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Coding sequence (CDS) from alignment at tig00000860_pilon:1130004..1131497+

>Ggra9008.t1 ID=Ggra9008.t1|Name=Ggra9008.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1494bp|location=Sequence derived from alignment at tig00000860_pilon:1130004..1131497+ (Gracilaria gracilis GNS1m male)
ATGTGGCCGCGCGCGCAGCTCAGCAAGCCGCGCCGCGCACCGTATCCGCA
CTACGCGCCCGATGGCGCACATGGCgcgcttggcgtggacctggcgctag
gcgcgctgctgttcgtgctctcgctggcgctgcgctgCTTCGGTCTCGGC
TTGCCGCCGGCCATCGTGTTCGATGAGGCGCACTTCGGCTCGTTTGTGGA
TCATATTCTCGCCCGTACGGCGTACTTTGACATTCATCCGCCGCTGGGCA
AGTTTACCTTGGCCGCCGCCGGCTGGTTTCTGGGCTACCGCGTGCAGCCT
GCTTTCCGCTACGACGCCATTGGGCGCGAGTATCACCGTGTGTTGTTTCT
CGCGTTGAGGATTGTCTCCGTCTTGTTTGGCGCTTTCACCAATGTGTTCA
TGTACCTTACGGCCAGGCTGCTGCCCATATCCAGGCTTTGTTCCGTCTTT
TGTGCTCTCTTGTTTATGTTTGACTCACTCAATGTCATCGAGAGTCGTCT
CATTCTTATGGAAGCTCAGTTGATGTTTTATCTTGTACTTTCCTTGTATT
GCGCCTTGAGGCTGTGGAAAACGCCTCCAACACACCTACGGTCCTTCTTC
TTCTGGATGACTTGCACCGCCTTTGCCTCTTCATGTGCCGTTTCTGTCAA
GTGGACTGCCCTGGCCACACCGGCGCTCATAGCCATTGTATCATTCTTTG
CCTTGCATTTCTTGAGCACGCCTCTTGCCGTTTGGCAATGTGTGTGGATG
CTGATGGTTGCTGTGTCTTGGTACTTGTTTTTGTTTCATGTTCATTTTCA
ACGTATCATTCATACGGGACCGGGCGCCCCGTTTCTTATGGAACAGTTTC
GCAACACGCTCATTGGAGACCCTAGCTACAACGCTACCGCCAAACGTCCT
TCGTTCATGCGCATGGTGTTGCAGATCAATCGCATGATGTTTGCTGCAAA
TGCTGCCGTCGCTGAGCGCCATACGTGGGAGACGTACTGGTATCAATGGA
TTGTCAATTGGAGAGGACTGCTCATGTTTACGAGGCAGACTGATACATCG
CATTGGCAAATTGTTTACCTACTTTGTAACCCCGTCGTGTGCATATGTTG
CGCTGTGTTTGTTCTCGTTTTTGCAACCCTTCGCATGCTTTGCATCCGCT
ATCCAACTCTGATATTTGGACGAGATCTGTTTTCTTACCATCACAGCCGA
AGATTCTTTGGCGCGGGCACGTTCTTATTGTTTGGCTGGTTGCTCAATCT
TTTACCATACATTCTCGTTGATCGATCCGCGTTTGTGTATCATTATTTAC
CTGGTTTGATGTATGCTCAGTTGTTGAGTGCTCTTGTTGTAGACCAGTTG
AGATTTCGTGTCAAGGTTTCGGTTGTTGTGAGCCTTAGTTTGGCCGTCAT
TGTTACTTACATCCATTTCGCACCCTGGATATATTGCATACCGCTTGATG
CTCATCAGCATGCAAAACGACGGTGGTGGGGACGTTGGGATTAA
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