Ggra9005.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9005.t1
Unique Name	Ggra9005.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	596

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000860_pilon	contig	tig00000860_pilon:1108716..1110503 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9005	Ggra9005	Gracilaria gracilis GNS1m male	gene	tig00000860_pilon 1108716..1110503 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9005.t1.start1	Ggra9005.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000860_pilon 1108716..1108718 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9005.t1.CDS1	Ggra9005.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000860_pilon 1108716..1110503 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9005.t1.exon1	Ggra9005.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000860_pilon 1108716..1110503 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9005.t1.stop1	Ggra9005.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000860_pilon 1110501..1110503 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9005.t1	Ggra9005.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000860_pilon 1108716..1110503 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000860_pilon:1108716..1110503+
coding sequence from alignment at tig00000860_pilon:1108716..1110503+

mRNA sequence

>Ggra9005.t1 ID=Ggra9005.t1|Name=Ggra9005.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=596bp
MPIRRANDPLTRSRSRRRPSNRSKQRKTEHTHDWYTIDEHGRPQSGCVLS
SDNDSSSDWDSSAPLSVLPRARGQKRPIRLTRQIAPRPFSDEPPSVDDWM
RNLIELRRWRQLPQTTTLTSATREWLSEQHRALENASLPIVLKCVLTVCN
ASPTFHRCREDFLRPEYRSRYWSWCETLVRLVDYYLDYGHVKVHLRGGQR
YKPLMLFIQNAQAQKEEGTLSTLKEQLLATIGVQWQRTEKLNLDIPPEAD
HDNDLYYGGNDTYWNMKPAAVGTSAKMKVGPFSQRTKKRRRLASAQSTFP
QPKTKPHSSSFDTGYFAGMTGAENDDRRSVLTWAKHIVELRAHFREGKGY
EIPPDCMYLTIWMHAEKARSVAGTLPAICCCVLKVTKLTDAVDDTVYISE
ECESWCKCYVEYLDFALDAHKPGHSRRKASITVTDFMFDCRQNMLECTLS
EERSALLRAVDENWLDSRLMEESIRRNRDKLEVNQPKNVNDTSGYWSVEE
KELDSGTYQDLVHYEQSRRRPVIRQKPKPVHSRKECKKMISSMIKGVIGE
TIEGRKRTAAEKEAEEWVSETGTQALNKYARLWFRDAAMNLKGRR*

spliced messenger RNA

>Ggra9005.t1 ID=Ggra9005.t1|Name=Ggra9005.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1788bp|location=Sequence derived from alignment at tig00000860_pilon:1108716..1110503+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTATCCGACGTGCCAATGATCCGCTCACTCGATCCAGGTCGCGCCG
TCGACCTTCCAACCGTTCAAAGCAAAGAAAGACCGAGCACACCCACGACT
GGTACACCATCGATGAACATGGTAGGCCACAGTCGGGCTGCGTCTTGTCC
AGCGACAACGACTCCTCTTCAGACTGGGATTCTTCTGCGCCGCTCAGCGT
GCTTCCTCGTGCTCGCGGCCAAAAACGTCCCATCCGCCTCACGCGCCAGA
TAGCACCCCGCCCTTTCTCTGATGAGCCGCCGTCCGTGGATGACTGGATG
CGCAATCTCATCGAGCTTCGAAGATGGCGCCAGCTTCCACAGACAACCAC
CCTCACGTCTGCCACCCGAGAATGGCTTTCTGAACAACATCGTGCTTTGG
AGAACGCTTCGCTACCCATTGTGCTCAAGTGTGTCTTGACCGTTTGCAAC
GCTTCGCCAACCTTCCACCGCTGCCGCGAAGACTTTCTCAGACCCGAGTA
TCGAAGCAGATACTGGTCGTGGTGCGAAACCCTTGTTCGCCTTGTCGACT
ACTACCTCGATTATGGCCATGTCAAAGTGCATCTTCGCGGCGGTCAACGC
TACAAACCTTTGATGCTCTTTATTCAAAACGCCCAAGCTCAGAAGGAGGA
AGGTACTTTGTCCACTCTGAAGGAACAGCTATTGGCCACCATCGGCGTGC
AATGGCAGCGTACGGAAAAACTAAATCTTGACATTCCGCCGGAAGCAGAC
CATGACAACGATCTGTATTACGGAGGAAATGACACATACTGGAACATGAA
ACCGGCTGCTGTTGGAACGTCGGCGAAAATGAAGGTCGGCCCATTTTCTC
AACGAACAAAGAAGAGGAGAAGATTGGCCTCAGCACAATCTACCTTCCCT
CAGCCGAAAACGAAACCACACAGCTCTTCCTTCGATACTGGTTATTTCGC
TGGAATGACTGGGGCGGAGAATGATGACCGTCGCTCGGTCCTGACGTGGG
CAAAGCATATCGTTGAGCTTCGAGCTCACTTTAGAGAGGGCAAAGGCTAT
GAGATTCCGCCGGACTGCATGTATTTAACCATATGGATGCATGCTGAAAA
GGCAAGAAGCGTTGCAGGCACTCTTCCGGCTATTTGCTGCTGCGTTCTCA
AAGTCACGAAGCTTACTGATGCAGTTGATGATACCGTTTATATCAGTGAA
GAGTGCGAAAGCTGGTGCAAATGCTACGTTGAATACTTGGATTTTGCCCT
GGATGCTCACAAACCTGGTCATTCTCGTCGAAAGGCTTCTATAACGGTCA
CCGATTTCATGTTCGACTGCAGGCAGAATATGCTTGAGTGCACTCTTTCG
GAAGAGCGGTCGGCTCTCTTGAGGGCTGTGGATGAGAACTGGCTTGACTC
GAGACTCATGGAGGAAAGTATCAGGCGAAACAGAGATAAACTTGAAGTAA
ACCAACCAAAGAACGTCAACGACACGAGCGGCTACTGGTCTGTGGAAGAA
AAAGAGCTTGACTCTGGGACCTATCAAGACCTGGTGCACTACGAGCAATC
GCGTCGGAGGCCTGTGATTCGGCAAAAACCAAAGCCCGTGCACTCACGGA
AGGAATGCAAGAAGATGATCTCCTCCATGATAAAAGGAGTTATTGGTGAA
ACTATTGAGGGTCGGAAGCGCACGGCTGCAGAGAAGGAAGCGGAGGAGTG
GGTTTCTGAGACAGGTACTCAGGCACTGAACAAATATGCTCGACTGTGGT
TTAGGGACGCCGCCATGAATCTTAAAGGCCGAAGGTAA

protein sequence of Ggra9005.t1

>Ggra9005.t1 ID=Ggra9005.t1|Name=Ggra9005.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=596bp
MPIRRANDPLTRSRSRRRPSNRSKQRKTEHTHDWYTIDEHGRPQSGCVLS
SDNDSSSDWDSSAPLSVLPRARGQKRPIRLTRQIAPRPFSDEPPSVDDWM
RNLIELRRWRQLPQTTTLTSATREWLSEQHRALENASLPIVLKCVLTVCN
ASPTFHRCREDFLRPEYRSRYWSWCETLVRLVDYYLDYGHVKVHLRGGQR
YKPLMLFIQNAQAQKEEGTLSTLKEQLLATIGVQWQRTEKLNLDIPPEAD
HDNDLYYGGNDTYWNMKPAAVGTSAKMKVGPFSQRTKKRRRLASAQSTFP
QPKTKPHSSSFDTGYFAGMTGAENDDRRSVLTWAKHIVELRAHFREGKGY
EIPPDCMYLTIWMHAEKARSVAGTLPAICCCVLKVTKLTDAVDDTVYISE
ECESWCKCYVEYLDFALDAHKPGHSRRKASITVTDFMFDCRQNMLECTLS
EERSALLRAVDENWLDSRLMEESIRRNRDKLEVNQPKNVNDTSGYWSVEE
KELDSGTYQDLVHYEQSRRRPVIRQKPKPVHSRKECKKMISSMIKGVIGE
TIEGRKRTAAEKEAEEWVSETGTQALNKYARLWFRDAAMNLKGRR*

mRNA from alignment at tig00000860_pilon:1108716..1110503+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9005.t1 ID=Ggra9005.t1|Name=Ggra9005.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1788bp|location=Sequence derived from alignment at tig00000860_pilon:1108716..1110503+ (Gracilaria gracilis GNS1m male)
ATGCCTATCCGACGTGCCAATGATCCGCTCACTCGATCCAGGTCGCGCCG
TCGACCTTCCAACCGTTCAAAGCAAAGAAAGACCGAGCACACCCACGACT
GGTACACCATCGATGAACATGGTAGGCCACAGTCGGGCTGCGTCTTGTCC
AGCGACAACGACTCCTCTTCAGACTGGGATTCTTCTGCGCCGCTCAGCGT
GCTTCCTCGTGCTCGCGGCCAAAAACGTCCCATCCGCCTCACGCGCCAGA
TAGCACCCCGCCCTTTCTCTGATGAGCCGCCGTCCGTGGATGACTGGATG
CGCAATCTCATCGAGCTTCGAAGATGGCGCCAGCTTCCACAGACAACCAC
CCTCACGTCTGCCACCCGAGAATGGCTTTCTGAACAACATCGTGCTTTGG
AGAACGCTTCGCTACCCATTGTGCTCAAGTGTGTCTTGACCGTTTGCAAC
GCTTCGCCAACCTTCCACCGCTGCCGCGAAGACTTTCTCAGACCCGAGTA
TCGAAGCAGATACTGGTCGTGGTGCGAAACCCTTGTTCGCCTTGTCGACT
ACTACCTCGATTATGGCCATGTCAAAGTGCATCTTCGCGGCGGTCAACGC
TACAAACCTTTGATGCTCTTTATTCAAAACGCCCAAGCTCAGAAGGAGGA
AGGTACTTTGTCCACTCTGAAGGAACAGCTATTGGCCACCATCGGCGTGC
AATGGCAGCGTACGGAAAAACTAAATCTTGACATTCCGCCGGAAGCAGAC
CATGACAACGATCTGTATTACGGAGGAAATGACACATACTGGAACATGAA
ACCGGCTGCTGTTGGAACGTCGGCGAAAATGAAGGTCGGCCCATTTTCTC
AACGAACAAAGAAGAGGAGAAGATTGGCCTCAGCACAATCTACCTTCCCT
CAGCCGAAAACGAAACCACACAGCTCTTCCTTCGATACTGGTTATTTCGC
TGGAATGACTGGGGCGGAGAATGATGACCGTCGCTCGGTCCTGACGTGGG
CAAAGCATATCGTTGAGCTTCGAGCTCACTTTAGAGAGGGCAAAGGCTAT
GAGATTCCGCCGGACTGCATGTATTTAACCATATGGATGCATGCTGAAAA
GGCAAGAAGCGTTGCAGGCACTCTTCCGGCTATTTGCTGCTGCGTTCTCA
AAGTCACGAAGCTTACTGATGCAGTTGATGATACCGTTTATATCAGTGAA
GAGTGCGAAAGCTGGTGCAAATGCTACGTTGAATACTTGGATTTTGCCCT
GGATGCTCACAAACCTGGTCATTCTCGTCGAAAGGCTTCTATAACGGTCA
CCGATTTCATGTTCGACTGCAGGCAGAATATGCTTGAGTGCACTCTTTCG
GAAGAGCGGTCGGCTCTCTTGAGGGCTGTGGATGAGAACTGGCTTGACTC
GAGACTCATGGAGGAAAGTATCAGGCGAAACAGAGATAAACTTGAAGTAA
ACCAACCAAAGAACGTCAACGACACGAGCGGCTACTGGTCTGTGGAAGAA
AAAGAGCTTGACTCTGGGACCTATCAAGACCTGGTGCACTACGAGCAATC
GCGTCGGAGGCCTGTGATTCGGCAAAAACCAAAGCCCGTGCACTCACGGA
AGGAATGCAAGAAGATGATCTCCTCCATGATAAAAGGAGTTATTGGTGAA
ACTATTGAGGGTCGGAAGCGCACGGCTGCAGAGAAGGAAGCGGAGGAGTG
GGTTTCTGAGACAGGTACTCAGGCACTGAACAAATATGCTCGACTGTGGT
TTAGGGACGCCGCCATGAATCTTAAAGGCCGAAGGTAA

Coding sequence (CDS) from alignment at tig00000860_pilon:1108716..1110503+

>Ggra9005.t1 ID=Ggra9005.t1|Name=Ggra9005.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1788bp|location=Sequence derived from alignment at tig00000860_pilon:1108716..1110503+ (Gracilaria gracilis GNS1m male)
ATGCCTATCCGACGTGCCAATGATCCGCTCACTCGATCCAGGTCGCGCCG
TCGACCTTCCAACCGTTCAAAGCAAAGAAAGACCGAGCACACCCACGACT
GGTACACCATCGATGAACATGGTAGGCCACAGTCGGGCTGCGTCTTGTCC
AGCGACAACGACTCCTCTTCAGACTGGGATTCTTCTGCGCCGCTCAGCGT
GCTTCCTCGTGCTCGCGGCCAAAAACGTCCCATCCGCCTCACGCGCCAGA
TAGCACCCCGCCCTTTCTCTGATGAGCCGCCGTCCGTGGATGACTGGATG
CGCAATCTCATCGAGCTTCGAAGATGGCGCCAGCTTCCACAGACAACCAC
CCTCACGTCTGCCACCCGAGAATGGCTTTCTGAACAACATCGTGCTTTGG
AGAACGCTTCGCTACCCATTGTGCTCAAGTGTGTCTTGACCGTTTGCAAC
GCTTCGCCAACCTTCCACCGCTGCCGCGAAGACTTTCTCAGACCCGAGTA
TCGAAGCAGATACTGGTCGTGGTGCGAAACCCTTGTTCGCCTTGTCGACT
ACTACCTCGATTATGGCCATGTCAAAGTGCATCTTCGCGGCGGTCAACGC
TACAAACCTTTGATGCTCTTTATTCAAAACGCCCAAGCTCAGAAGGAGGA
AGGTACTTTGTCCACTCTGAAGGAACAGCTATTGGCCACCATCGGCGTGC
AATGGCAGCGTACGGAAAAACTAAATCTTGACATTCCGCCGGAAGCAGAC
CATGACAACGATCTGTATTACGGAGGAAATGACACATACTGGAACATGAA
ACCGGCTGCTGTTGGAACGTCGGCGAAAATGAAGGTCGGCCCATTTTCTC
AACGAACAAAGAAGAGGAGAAGATTGGCCTCAGCACAATCTACCTTCCCT
CAGCCGAAAACGAAACCACACAGCTCTTCCTTCGATACTGGTTATTTCGC
TGGAATGACTGGGGCGGAGAATGATGACCGTCGCTCGGTCCTGACGTGGG
CAAAGCATATCGTTGAGCTTCGAGCTCACTTTAGAGAGGGCAAAGGCTAT
GAGATTCCGCCGGACTGCATGTATTTAACCATATGGATGCATGCTGAAAA
GGCAAGAAGCGTTGCAGGCACTCTTCCGGCTATTTGCTGCTGCGTTCTCA
AAGTCACGAAGCTTACTGATGCAGTTGATGATACCGTTTATATCAGTGAA
GAGTGCGAAAGCTGGTGCAAATGCTACGTTGAATACTTGGATTTTGCCCT
GGATGCTCACAAACCTGGTCATTCTCGTCGAAAGGCTTCTATAACGGTCA
CCGATTTCATGTTCGACTGCAGGCAGAATATGCTTGAGTGCACTCTTTCG
GAAGAGCGGTCGGCTCTCTTGAGGGCTGTGGATGAGAACTGGCTTGACTC
GAGACTCATGGAGGAAAGTATCAGGCGAAACAGAGATAAACTTGAAGTAA
ACCAACCAAAGAACGTCAACGACACGAGCGGCTACTGGTCTGTGGAAGAA
AAAGAGCTTGACTCTGGGACCTATCAAGACCTGGTGCACTACGAGCAATC
GCGTCGGAGGCCTGTGATTCGGCAAAAACCAAAGCCCGTGCACTCACGGA
AGGAATGCAAGAAGATGATCTCCTCCATGATAAAAGGAGTTATTGGTGAA
ACTATTGAGGGTCGGAAGCGCACGGCTGCAGAGAAGGAAGCGGAGGAGTG
GGTTTCTGAGACAGGTACTCAGGCACTGAACAAATATGCTCGACTGTGGT
TTAGGGACGCCGCCATGAATCTTAAAGGCCGAAGGTAA