Ggra9004.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9004.t1
Unique NameGgra9004.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length531
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:1106213..1107936 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709015.1
PFAMsHD
Max annot lvl2759|Eukaryota
KEGG koko:K06941
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006163,GO:0006195,GO:0006203,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008832,GO:0009056,GO:0009058,GO:0009117,GO:0009141,GO:0009143,GO:0009144,GO:0009146,GO:0009151,GO:0009155,GO:0009166,GO:0009200,GO:0009204,GO:0009215,GO:0009217,GO:0009262,GO:0009264,GO:0009394,GO:0009987,GO:0016787,GO:0016788,GO:0016793,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042578,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046070,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072521,GO:0072523,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576
Evalue4.28e-128
EggNOG OGsCOG1078@1|root,KOG2681@2759|Eukaryota
EC2.1.1.192
DescriptiondGTPase activity
COG categoryH
BRITEko00000,ko01000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9004Ggra9004Gracilaria gracilis GNS1m malegenetig00000860_pilon 1106213..1107936 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9004.t1Ggra9004.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 1106213..1107936 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9004.t1.stop1Ggra9004.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 1106213..1106215 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9004.t1.CDS1Ggra9004.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 1106213..1106555 -
Ggra9004.t1.CDS2Ggra9004.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000860_pilon 1106633..1107047 -
Ggra9004.t1.CDS3Ggra9004.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000860_pilon 1107102..1107936 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9004.t1.exon1Ggra9004.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 1106213..1106555 -
Ggra9004.t1.exon2Ggra9004.t1.exon2Gracilaria gracilis GNS1m maleexontig00000860_pilon 1106633..1107047 -
Ggra9004.t1.exon3Ggra9004.t1.exon3Gracilaria gracilis GNS1m maleexontig00000860_pilon 1107102..1107936 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9004.t1.intron1Ggra9004.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000860_pilon 1106556..1106632 -
Ggra9004.t1.intron2Ggra9004.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000860_pilon 1107048..1107101 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9004.t1.start1Ggra9004.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 1107934..1107936 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9004.t1 ID=Ggra9004.t1|Name=Ggra9004.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=531bp
MSTLSTTSQPDGFDIITSQTVAPSRTRVKVINDPIHGHFELHDPILRVID
TPHFQRLRDLKQLGATYYVYPGASHNRFEHCIGVSHLSRSFVQKLYRNSR
DPHARMLYDGEEHYEHAQMLVQLAGLAHDLGHGPFSHMFDHVFLPAVAEN
NPQFRHSPLLKHEERSVLLFEHCVDAFNIDLTREDIRTVAQFIRGDKSGG
TLTPRFLYDVVANSSTGIDTDKFDYLARDVYNVGLQGAYGFDHRRLTNFA
KVVDDNICFHRKEIFNVYHLFLTRFQLHRTVYNHRAALSIDAMVSDAFLH
ADSHLGISASILDPEQFLTVADSMTTIIERSKEASMKPARDLIRRLRSRK
LYRFVEEVLLPAGVSRKITSAQITTCQDAAGTGVTLTPEDVYIAHVTLNF
GMKDKNPVDRVLFFKDWDDMNPMHISSAKASYVLPAVFEEKIIRIFVTRE
ENDDSNRVKKAVSVAFRNFMRRENLGSSLNSPVLTKRSRELAGLNGDLNK
LEQIEPIAHGLGDSQASRAAKRCKPESSAG*
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spliced messenger RNA

>Ggra9004.t1 ID=Ggra9004.t1|Name=Ggra9004.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1593bp|location=Sequence derived from alignment at tig00000860_pilon:1106213..1107936- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCACATTGTCAACCACTTCTCAGCCTGATGGCTTTGATATCATCAC
CTCGCAGACTGTGGCTCCTTCCCGCACCCGCGTCAAAGTCATCAATGATC
CTATCCACGGTCATTTCGAGCTTCATGATCCCATCCTGCGAGTCATAGAC
ACGCCTCACTTCCAACGCCTTCGCGACCTCAAGCAGTTGGGTGCAACCTA
CTATGTCTATCCCGGCGCCTCGCACAACAGATTCGAGCACTGCATAGGTG
TGTCCCACCTCTCGCGCTCCTTCGTCCAAAAGCTGTACCGCAATTCGAGA
GATCCGCACGCCCGAATGCTGTACGACGGCGAAGAGCACTATGAGCACGC
TCAAATGCTGGTGCAACTTGCAGGCCTTGCTCATGACTTGGGGCACGGTC
CGTTTAGTCATATGTTTGACCACGTCTTTCTTCCAGCCGTCGCTGAGAAC
AACCCACAATTCCGCCACTCTCCACTTCTTAAGCATGAGGAACGCAGCGT
GCTGCTCTTTGAACATTGTGTGGACGCTTTCAATATTGACTTGACTCGCG
AAGACATTCGCACCGTTGCCCAGTTCATTCGTGGCGATAAAAGTGGAGGT
ACCCTCACCCCTCGCTTTCTGTATGATGTAGTTGCCAACTCTAGCACCGG
TATCGACACCGACAAGTTCGATTACCTCGCCAGAGATGTGTACAATGTTG
GCTTGCAAGGAGCTTACGGTTTTGATCACCGAAGGTTGACCAACTTTGCC
AAAGTCGTAGACGACAATATTTGCTTTCACCGCAAAGAAATCTTTAACGT
ATACCATCTCTTTCTTACTCGCTTTCAGTTACATCGCACTGTGTATAATC
ATCGAGCTGCTTTGAGCATTGACGCAATGGTGTCCGACGCTTTTCTCCAT
GCAGACAGTCATTTGGGTATATCTGCCTCAATACTAGATCCCGAGCAGTT
CCTCACTGTGGCTGACAGCATGACAACGATAATAGAGCGCTCCAAAGAAG
CCTCCATGAAGCCCGCACGCGACCTTATTCGACGATTGAGATCCCGAAAG
CTGTACAGATTTGTTGAGGAGGTGCTCTTGCCGGCAGGAGTGTCTCGAAA
GATCACATCAGCCCAAATCACTACATGTCAGGATGCTGCTGGAACGGGAG
TCACGTTAACGCCAGAAGATGTGTATATAGCTCATGTAACTCTCAACTTT
GGTATGAAGGACAAGAACCCTGTTGATCGCGTCTTGTTTTTCAAGGATTG
GGATGACATGAACCCAATGCACATATCTTCTGCGAAAGCTTCGTATGTTC
TCCCGGCCGTTTTCGAGGAAAAAATAATTCGGATCTTTGTGACGCGGGAA
GAAAACGATGACTCGAATCGTGTGAAGAAGGCCGTCTCGGTTGCTTTTCG
AAATTTCATGAGGCGGGAAAACCTCGGGTCCTCATTGAATTCACCTGTTC
TGACGAAGAGGAGTAGGGAACTGGCAGGTCTGAATGGGGATTTAAATAAG
CTGGAACAAATTGAACCGATTGCACATGGACTTGGTGATTCACAGGCATC
CAGAGCTGCAAAGCGTTGCAAGCCTGAAAGTTCTGCCGGTTAA
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protein sequence of Ggra9004.t1

>Ggra9004.t1 ID=Ggra9004.t1|Name=Ggra9004.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=531bp
MSTLSTTSQPDGFDIITSQTVAPSRTRVKVINDPIHGHFELHDPILRVID
TPHFQRLRDLKQLGATYYVYPGASHNRFEHCIGVSHLSRSFVQKLYRNSR
DPHARMLYDGEEHYEHAQMLVQLAGLAHDLGHGPFSHMFDHVFLPAVAEN
NPQFRHSPLLKHEERSVLLFEHCVDAFNIDLTREDIRTVAQFIRGDKSGG
TLTPRFLYDVVANSSTGIDTDKFDYLARDVYNVGLQGAYGFDHRRLTNFA
KVVDDNICFHRKEIFNVYHLFLTRFQLHRTVYNHRAALSIDAMVSDAFLH
ADSHLGISASILDPEQFLTVADSMTTIIERSKEASMKPARDLIRRLRSRK
LYRFVEEVLLPAGVSRKITSAQITTCQDAAGTGVTLTPEDVYIAHVTLNF
GMKDKNPVDRVLFFKDWDDMNPMHISSAKASYVLPAVFEEKIIRIFVTRE
ENDDSNRVKKAVSVAFRNFMRRENLGSSLNSPVLTKRSRELAGLNGDLNK
LEQIEPIAHGLGDSQASRAAKRCKPESSAG*
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mRNA from alignment at tig00000860_pilon:1106213..1107936-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9004.t1 ID=Ggra9004.t1|Name=Ggra9004.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1724bp|location=Sequence derived from alignment at tig00000860_pilon:1106213..1107936- (Gracilaria gracilis GNS1m male)
ATGTCCACATTGTCAACCACTTCTCAGCCTGATGGCTTTGATATCATCAC
CTCGCAGACTGTGGCTCCTTCCCGCACCCGCGTCAAAGTCATCAATGATC
CTATCCACGGTCATTTCGAGCTTCATGATCCCATCCTGCGAGTCATAGAC
ACGCCTCACTTCCAACGCCTTCGCGACCTCAAGCAGTTGGGTGCAACCTA
CTATGTCTATCCCGGCGCCTCGCACAACAGATTCGAGCACTGCATAGGTG
TGTCCCACCTCTCGCGCTCCTTCGTCCAAAAGCTGTACCGCAATTCGAGA
GATCCGCACGCCCGAATGCTGTACGACGGCGAAGAGCACTATGAGCACGC
TCAAATGCTGGTGCAACTTGCAGGCCTTGCTCATGACTTGGGGCACGGTC
CGTTTAGTCATATGTTTGACCACGTCTTTCTTCCAGCCGTCGCTGAGAAC
AACCCACAATTCCGCCACTCTCCACTTCTTAAGCATGAGGAACGCAGCGT
GCTGCTCTTTGAACATTGTGTGGACGCTTTCAATATTGACTTGACTCGCG
AAGACATTCGCACCGTTGCCCAGTTCATTCGTGGCGATAAAAGTGGAGGT
ACCCTCACCCCTCGCTTTCTGTATGATGTAGTTGCCAACTCTAGCACCGG
TATCGACACCGACAAGTTCGATTACCTCGCCAGAGATGTGTACAATGTTG
GCTTGCAAGGAGCTTACGGTTTTGATCACCGAAGGTTGACCAACTTTGCC
AAAGTCGTAGACGACAATATTTGCTTTCACCGCAAAGAAATCTTTAACGT
ATACCATCTCTTTCTTACTCGCTTTCAGTTACATCGTACGTACCCCATGT
TTCTTTTTTTGCAGCACCTTCTTTTCTAACCTTGCCCAGGCACTGTGTAT
AATCATCGAGCTGCTTTGAGCATTGACGCAATGGTGTCCGACGCTTTTCT
CCATGCAGACAGTCATTTGGGTATATCTGCCTCAATACTAGATCCCGAGC
AGTTCCTCACTGTGGCTGACAGCATGACAACGATAATAGAGCGCTCCAAA
GAAGCCTCCATGAAGCCCGCACGCGACCTTATTCGACGATTGAGATCCCG
AAAGCTGTACAGATTTGTTGAGGAGGTGCTCTTGCCGGCAGGAGTGTCTC
GAAAGATCACATCAGCCCAAATCACTACATGTCAGGATGCTGCTGGAACG
GGAGTCACGTTAACGCCAGAAGATGTGTATATAGCTCATGTAACTCTCAA
CTTTGGTATGAAGGACAAGAACCCTGTTGATCGCGTCTTGTTTTTCAAGG
ATTGGTACGTTCGTTAATGTCTTCTCTTCACTGTCCAATATCTCCATTCT
TACAGACTCTTTTCGTCCCAAATCTTCACAGGGATGACATGAACCCAATG
CACATATCTTCTGCGAAAGCTTCGTATGTTCTCCCGGCCGTTTTCGAGGA
AAAAATAATTCGGATCTTTGTGACGCGGGAAGAAAACGATGACTCGAATC
GTGTGAAGAAGGCCGTCTCGGTTGCTTTTCGAAATTTCATGAGGCGGGAA
AACCTCGGGTCCTCATTGAATTCACCTGTTCTGACGAAGAGGAGTAGGGA
ACTGGCAGGTCTGAATGGGGATTTAAATAAGCTGGAACAAATTGAACCGA
TTGCACATGGACTTGGTGATTCACAGGCATCCAGAGCTGCAAAGCGTTGC
AAGCCTGAAAGTTCTGCCGGTTAA
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Coding sequence (CDS) from alignment at tig00000860_pilon:1106213..1107936-

>Ggra9004.t1 ID=Ggra9004.t1|Name=Ggra9004.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1593bp|location=Sequence derived from alignment at tig00000860_pilon:1106213..1107936- (Gracilaria gracilis GNS1m male)
ATGTCCACATTGTCAACCACTTCTCAGCCTGATGGCTTTGATATCATCAC
CTCGCAGACTGTGGCTCCTTCCCGCACCCGCGTCAAAGTCATCAATGATC
CTATCCACGGTCATTTCGAGCTTCATGATCCCATCCTGCGAGTCATAGAC
ACGCCTCACTTCCAACGCCTTCGCGACCTCAAGCAGTTGGGTGCAACCTA
CTATGTCTATCCCGGCGCCTCGCACAACAGATTCGAGCACTGCATAGGTG
TGTCCCACCTCTCGCGCTCCTTCGTCCAAAAGCTGTACCGCAATTCGAGA
GATCCGCACGCCCGAATGCTGTACGACGGCGAAGAGCACTATGAGCACGC
TCAAATGCTGGTGCAACTTGCAGGCCTTGCTCATGACTTGGGGCACGGTC
CGTTTAGTCATATGTTTGACCACGTCTTTCTTCCAGCCGTCGCTGAGAAC
AACCCACAATTCCGCCACTCTCCACTTCTTAAGCATGAGGAACGCAGCGT
GCTGCTCTTTGAACATTGTGTGGACGCTTTCAATATTGACTTGACTCGCG
AAGACATTCGCACCGTTGCCCAGTTCATTCGTGGCGATAAAAGTGGAGGT
ACCCTCACCCCTCGCTTTCTGTATGATGTAGTTGCCAACTCTAGCACCGG
TATCGACACCGACAAGTTCGATTACCTCGCCAGAGATGTGTACAATGTTG
GCTTGCAAGGAGCTTACGGTTTTGATCACCGAAGGTTGACCAACTTTGCC
AAAGTCGTAGACGACAATATTTGCTTTCACCGCAAAGAAATCTTTAACGT
ATACCATCTCTTTCTTACTCGCTTTCAGTTACATCGCACTGTGTATAATC
ATCGAGCTGCTTTGAGCATTGACGCAATGGTGTCCGACGCTTTTCTCCAT
GCAGACAGTCATTTGGGTATATCTGCCTCAATACTAGATCCCGAGCAGTT
CCTCACTGTGGCTGACAGCATGACAACGATAATAGAGCGCTCCAAAGAAG
CCTCCATGAAGCCCGCACGCGACCTTATTCGACGATTGAGATCCCGAAAG
CTGTACAGATTTGTTGAGGAGGTGCTCTTGCCGGCAGGAGTGTCTCGAAA
GATCACATCAGCCCAAATCACTACATGTCAGGATGCTGCTGGAACGGGAG
TCACGTTAACGCCAGAAGATGTGTATATAGCTCATGTAACTCTCAACTTT
GGTATGAAGGACAAGAACCCTGTTGATCGCGTCTTGTTTTTCAAGGATTG
GGATGACATGAACCCAATGCACATATCTTCTGCGAAAGCTTCGTATGTTC
TCCCGGCCGTTTTCGAGGAAAAAATAATTCGGATCTTTGTGACGCGGGAA
GAAAACGATGACTCGAATCGTGTGAAGAAGGCCGTCTCGGTTGCTTTTCG
AAATTTCATGAGGCGGGAAAACCTCGGGTCCTCATTGAATTCACCTGTTC
TGACGAAGAGGAGTAGGGAACTGGCAGGTCTGAATGGGGATTTAAATAAG
CTGGAACAAATTGAACCGATTGCACATGGACTTGGTGATTCACAGGCATC
CAGAGCTGCAAAGCGTTGCAAGCCTGAAAGTTCTGCCGGTTAA
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