Ggra9003.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9003.t1
Unique NameGgra9003.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length203
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:1105406..1106014 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9003Ggra9003Gracilaria gracilis GNS1m malegenetig00000860_pilon 1105406..1106014 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9003.t1.start1Ggra9003.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 1105406..1105408 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9003.t1.CDS1Ggra9003.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 1105406..1106014 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9003.t1.exon1Ggra9003.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 1105406..1106014 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9003.t1.stop1Ggra9003.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 1106012..1106014 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9003.t1Ggra9003.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 1105406..1106014 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9003.t1 ID=Ggra9003.t1|Name=Ggra9003.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=203bp
MFVFNPPPLLRAPKLAPSNQFLLAKASLPLEGKLYDKLSLGNFVDLESQS
LTLQMSKTIPTSILSTALDADLPAKVVFSAKPGSISQKGAQFAPIAKASF
SIRLLDLGTSDSRQKGFLKFKYTVRSTGRRDHGFEIDRKICLFGLPSTTL
YGNVAYRTNSKTKAWKTRSSFGLQQDFNFAGIKCAARVGLTPEGEAVVDI
KL*
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spliced messenger RNA

>Ggra9003.t1 ID=Ggra9003.t1|Name=Ggra9003.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=609bp|location=Sequence derived from alignment at tig00000860_pilon:1105406..1106014+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCGTGTTCAACCCACCTCCACTTCTCCGCGCCCCCAAGCTAGCGCC
AAGCAACCAGTTTCTTCTGGCAAAGGCTTCTCTTCCGCTCGAAGGGAAGC
TCTACGATAAGCTATCGTTGGGAAATTTCGTCGACCTCGAATCACAGTCG
CTTACGCTCCAAATGTCAAAGACGATCCCTACTTCGATACTATCTACTGC
ACTTGATGCAGACTTACCCGCCAAGGTTGTCTTTTCAGCCAAACCTGGAT
CTATTTCACAAAAAGGTGCACAGTTCGCTCCGATCGCGAAAGCCAGTTTC
AGCATTAGGTTGCTTGATCTCGGTACATCTGATTCTCGCCAAAAGGGCTT
CTTGAAGTTCAAATACACGGTTCGATCAACAGGTCGTCGTGACCACGGAT
TTGAGATTGATCGCAAGATTTGTTTGTTCGGACTGCCAAGCACTACCCTG
TACGGTAACGTGGCCTACCGGACTAATAGCAAAACAAAGGCGTGGAAGAC
GAGGTCCAGTTTTGGATTACAGCAAGATTTCAACTTTGCTGGCATAAAGT
GTGCTGCTCGAGTTGGGCTGACTCCAGAAGGTGAGGCCGTTGTCGATATC
AAACTGTGA
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protein sequence of Ggra9003.t1

>Ggra9003.t1 ID=Ggra9003.t1|Name=Ggra9003.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=203bp
MFVFNPPPLLRAPKLAPSNQFLLAKASLPLEGKLYDKLSLGNFVDLESQS
LTLQMSKTIPTSILSTALDADLPAKVVFSAKPGSISQKGAQFAPIAKASF
SIRLLDLGTSDSRQKGFLKFKYTVRSTGRRDHGFEIDRKICLFGLPSTTL
YGNVAYRTNSKTKAWKTRSSFGLQQDFNFAGIKCAARVGLTPEGEAVVDI
KL*
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mRNA from alignment at tig00000860_pilon:1105406..1106014+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9003.t1 ID=Ggra9003.t1|Name=Ggra9003.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=609bp|location=Sequence derived from alignment at tig00000860_pilon:1105406..1106014+ (Gracilaria gracilis GNS1m male)
ATGTTCGTGTTCAACCCACCTCCACTTCTCCGCGCCCCCAAGCTAGCGCC
AAGCAACCAGTTTCTTCTGGCAAAGGCTTCTCTTCCGCTCGAAGGGAAGC
TCTACGATAAGCTATCGTTGGGAAATTTCGTCGACCTCGAATCACAGTCG
CTTACGCTCCAAATGTCAAAGACGATCCCTACTTCGATACTATCTACTGC
ACTTGATGCAGACTTACCCGCCAAGGTTGTCTTTTCAGCCAAACCTGGAT
CTATTTCACAAAAAGGTGCACAGTTCGCTCCGATCGCGAAAGCCAGTTTC
AGCATTAGGTTGCTTGATCTCGGTACATCTGATTCTCGCCAAAAGGGCTT
CTTGAAGTTCAAATACACGGTTCGATCAACAGGTCGTCGTGACCACGGAT
TTGAGATTGATCGCAAGATTTGTTTGTTCGGACTGCCAAGCACTACCCTG
TACGGTAACGTGGCCTACCGGACTAATAGCAAAACAAAGGCGTGGAAGAC
GAGGTCCAGTTTTGGATTACAGCAAGATTTCAACTTTGCTGGCATAAAGT
GTGCTGCTCGAGTTGGGCTGACTCCAGAAGGTGAGGCCGTTGTCGATATC
AAACTGTGA
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Coding sequence (CDS) from alignment at tig00000860_pilon:1105406..1106014+

>Ggra9003.t1 ID=Ggra9003.t1|Name=Ggra9003.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=609bp|location=Sequence derived from alignment at tig00000860_pilon:1105406..1106014+ (Gracilaria gracilis GNS1m male)
ATGTTCGTGTTCAACCCACCTCCACTTCTCCGCGCCCCCAAGCTAGCGCC
AAGCAACCAGTTTCTTCTGGCAAAGGCTTCTCTTCCGCTCGAAGGGAAGC
TCTACGATAAGCTATCGTTGGGAAATTTCGTCGACCTCGAATCACAGTCG
CTTACGCTCCAAATGTCAAAGACGATCCCTACTTCGATACTATCTACTGC
ACTTGATGCAGACTTACCCGCCAAGGTTGTCTTTTCAGCCAAACCTGGAT
CTATTTCACAAAAAGGTGCACAGTTCGCTCCGATCGCGAAAGCCAGTTTC
AGCATTAGGTTGCTTGATCTCGGTACATCTGATTCTCGCCAAAAGGGCTT
CTTGAAGTTCAAATACACGGTTCGATCAACAGGTCGTCGTGACCACGGAT
TTGAGATTGATCGCAAGATTTGTTTGTTCGGACTGCCAAGCACTACCCTG
TACGGTAACGTGGCCTACCGGACTAATAGCAAAACAAAGGCGTGGAAGAC
GAGGTCCAGTTTTGGATTACAGCAAGATTTCAACTTTGCTGGCATAAAGT
GTGCTGCTCGAGTTGGGCTGACTCCAGAAGGTGAGGCCGTTGTCGATATC
AAACTGTGA
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