Ggra9000.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9000.t1
Unique NameGgra9000.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length359
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:1096071..1097147 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog136037.KDR09129
Preferred nameCCNH
PFAMsCyclin_C_2,Cyclin_N
Max annot lvl33208|Metazoa
KEGG koko:K06634
KEGG Pathwayko03022,ko03420,ko04110,map03022,map03420,map04110
KEGG ModuleM00290
GOsGO:0000079,GO:0000307,GO:0000428,GO:0001932,GO:0001934,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004693,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005675,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006294,GO:0006351,GO:0006352,GO:0006353,GO:0006354,GO:0006355,GO:0006357,GO:0006360,GO:0006361,GO:0006363,GO:0006366,GO:0006367,GO:0006368,GO:0006370,GO:0006396,GO:0006397,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009452,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0016071,GO:0016301,GO:0016310,GO:0016538,GO:0016591,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019207,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019538,GO:0019887,GO:0019907,GO:0019908,GO:0022607,GO:0030234,GO:0030880,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031401,GO:0031647,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032774,GO:0032806,GO:0032991,GO:0033554,GO:0033674,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0036260,GO:0042325,GO:0042327,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043549,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0045737,GO:0045787,GO:0045859,GO:0045860,GO:0045893,GO:0045935,GO:0045937,GO:0045944,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0050821,GO:0050896,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051338,GO:0051347,GO:0051716,GO:0051726,GO:0055029,GO:0060255,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0071704,GO:0071824,GO:0071840,GO:0071900,GO:0071902,GO:0080090,GO:0090304,GO:0090575,GO:0097472,GO:0097659,GO:0098772,GO:0140096,GO:0150005,GO:1901360,GO:1901362,GO:1901407,GO:1901409,GO:1901564,GO:1901576,GO:1902494,GO:1902554,GO:1902680,GO:1902911,GO:1903506,GO:1903508,GO:1904029,GO:1904031,GO:1990234,GO:2000112,GO:2001141
Evalue2.96e-21
EggNOG OGsCOG5333@1|root,KOG2496@2759|Eukaryota,38DJD@33154|Opisthokonta,3BFF1@33208|Metazoa,3CUDB@33213|Bilateria,41XRR@6656|Arthropoda,3SFWR@50557|Insecta
Descriptioncyclin-dependent protein serine threonine kinase regulator activity. It is involved in the biological process described with regulation of transcription, DNA-templated
COG categoryDKL
BRITEko00000,ko00001,ko00002,ko03021,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9000Ggra9000Gracilaria gracilis GNS1m malegenetig00000860_pilon 1096071..1097147 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9000.t1.start1Ggra9000.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 1096071..1096073 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9000.t1.CDS1Ggra9000.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 1096071..1097147 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9000.t1.exon1Ggra9000.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 1096071..1097147 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9000.t1.stop1Ggra9000.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 1097145..1097147 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9000.t1Ggra9000.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 1096071..1097147 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9000.t1 ID=Ggra9000.t1|Name=Ggra9000.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=359bp
MALYQDSTQARFWSLTAEDVHSLRLQTHQRAVSTRPGTDQLLSPDDEALI
RRHHERRILRFNRANHLPDKLAATAVMYFKRFFLHRSVMDYNPSVIALSA
LYAASKVEEVVFDAQDLVARFDACVNGVASDIALEHTPMSADQCADRAST
DAILNTELWFLQQINFHLICYHPFKSLGIVREKLHSSNVCGQGQQATHLL
SELIATAENIIRRRALLTDLPLSHPPAVIAIAATIIAAEAKSNPQEEQLL
QVLAGTDNKAVNRIRTAIQILRLLPDHTPEDEASQVAALEKRRKAVQKNI
NDPMSSEYKEMQMQQLREEDEEESERARTFQEKLKRRSEALLGFANMDIS
SKKRKMET*
back to top

spliced messenger RNA

>Ggra9000.t1 ID=Ggra9000.t1|Name=Ggra9000.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1077bp|location=Sequence derived from alignment at tig00000860_pilon:1096071..1097147+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCTGTACCAAGATTCAACACAGGCACGTTTCTGGTCCCTCACAGC
AGAAGACGTTCACTCGCTTCGCCTTCAAACTCATCAGCGCGCCGTATCAA
CGCGTCCGGGCACCGACCAACTGTTGTCTCCAGACGATGAAGCTCTCATT
CGTCGTCATCACGAACGACGAATTCTTCGCTTTAACCGCGCCAATCACCT
GCCTGATAAACTGGCCGCAACTGCTGTCATGTATTTCAAACGGTTTTTCT
TGCATCGATCAGTCATGGATTACAACCCTTCCGTCATTGCTCTTTCTGCT
CTTTACGCCGCCAGTAAAGTGGAGGAGGTTGTTTTCGATGCACAGGATCT
AGTTGCACGTTTTGATGCCTGTGTGAATGGGGTTGCGTCGGACATTGCTT
TGGAGCACACTCCAATGTCTGCAGATCAATGTGCTGATAGAGCTTCTACC
GATGCCATTCTTAACACCGAGCTTTGGTTTTTGCAACAGATCAATTTTCA
TCTCATTTGTTATCATCCGTTCAAATCACTCGGCATTGTACGAGAGAAGC
TTCATTCATCAAATGTATGCGGACAGGGGCAACAAGCCACCCACTTATTA
TCCGAACTAATCGCAACAGCGGAGAACATAATTCGAAGAAGAGCATTATT
AACTGATTTACCTCTATCCCATCCGCCTGCCGTCATCGCCATAGCTGCCA
CTATAATTGCAGCAGAAGCTAAATCAAATCCACAGGAGGAACAGCTATTA
CAAGTTCTAGCCGGAACTGATAACAAAGCCGTTAATAGAATACGAACTGC
GATTCAAATTTTGCGTCTTCTCCCTGACCACACTCCTGAGGATGAAGCCA
GTCAAGTTGCTGCACTTGAGAAAAGGCGAAAAGCTGTGCAGAAGAACATT
AACGATCCTATGAGTAGCGAATACAAGGAAATGCAGATGCAACAGCTAAG
AGAGGAGGATGAGGAGGAGTCGGAAAGGGCCAGAACGTTTCAAGAAAAAC
TTAAACGTAGATCGGAAGCTTTGTTAGGATTTGCTAACATGGACATATCA
AGTAAAAAGAGAAAAATGGAAACATGA
back to top

protein sequence of Ggra9000.t1

>Ggra9000.t1 ID=Ggra9000.t1|Name=Ggra9000.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=359bp
MALYQDSTQARFWSLTAEDVHSLRLQTHQRAVSTRPGTDQLLSPDDEALI
RRHHERRILRFNRANHLPDKLAATAVMYFKRFFLHRSVMDYNPSVIALSA
LYAASKVEEVVFDAQDLVARFDACVNGVASDIALEHTPMSADQCADRAST
DAILNTELWFLQQINFHLICYHPFKSLGIVREKLHSSNVCGQGQQATHLL
SELIATAENIIRRRALLTDLPLSHPPAVIAIAATIIAAEAKSNPQEEQLL
QVLAGTDNKAVNRIRTAIQILRLLPDHTPEDEASQVAALEKRRKAVQKNI
NDPMSSEYKEMQMQQLREEDEEESERARTFQEKLKRRSEALLGFANMDIS
SKKRKMET*
back to top

mRNA from alignment at tig00000860_pilon:1096071..1097147+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9000.t1 ID=Ggra9000.t1|Name=Ggra9000.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1077bp|location=Sequence derived from alignment at tig00000860_pilon:1096071..1097147+ (Gracilaria gracilis GNS1m male)
ATGGCGCTGTACCAAGATTCAACACAGGCACGTTTCTGGTCCCTCACAGC
AGAAGACGTTCACTCGCTTCGCCTTCAAACTCATCAGCGCGCCGTATCAA
CGCGTCCGGGCACCGACCAACTGTTGTCTCCAGACGATGAAGCTCTCATT
CGTCGTCATCACGAACGACGAATTCTTCGCTTTAACCGCGCCAATCACCT
GCCTGATAAACTGGCCGCAACTGCTGTCATGTATTTCAAACGGTTTTTCT
TGCATCGATCAGTCATGGATTACAACCCTTCCGTCATTGCTCTTTCTGCT
CTTTACGCCGCCAGTAAAGTGGAGGAGGTTGTTTTCGATGCACAGGATCT
AGTTGCACGTTTTGATGCCTGTGTGAATGGGGTTGCGTCGGACATTGCTT
TGGAGCACACTCCAATGTCTGCAGATCAATGTGCTGATAGAGCTTCTACC
GATGCCATTCTTAACACCGAGCTTTGGTTTTTGCAACAGATCAATTTTCA
TCTCATTTGTTATCATCCGTTCAAATCACTCGGCATTGTACGAGAGAAGC
TTCATTCATCAAATGTATGCGGACAGGGGCAACAAGCCACCCACTTATTA
TCCGAACTAATCGCAACAGCGGAGAACATAATTCGAAGAAGAGCATTATT
AACTGATTTACCTCTATCCCATCCGCCTGCCGTCATCGCCATAGCTGCCA
CTATAATTGCAGCAGAAGCTAAATCAAATCCACAGGAGGAACAGCTATTA
CAAGTTCTAGCCGGAACTGATAACAAAGCCGTTAATAGAATACGAACTGC
GATTCAAATTTTGCGTCTTCTCCCTGACCACACTCCTGAGGATGAAGCCA
GTCAAGTTGCTGCACTTGAGAAAAGGCGAAAAGCTGTGCAGAAGAACATT
AACGATCCTATGAGTAGCGAATACAAGGAAATGCAGATGCAACAGCTAAG
AGAGGAGGATGAGGAGGAGTCGGAAAGGGCCAGAACGTTTCAAGAAAAAC
TTAAACGTAGATCGGAAGCTTTGTTAGGATTTGCTAACATGGACATATCA
AGTAAAAAGAGAAAAATGGAAACATGA
back to top

Coding sequence (CDS) from alignment at tig00000860_pilon:1096071..1097147+

>Ggra9000.t1 ID=Ggra9000.t1|Name=Ggra9000.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1077bp|location=Sequence derived from alignment at tig00000860_pilon:1096071..1097147+ (Gracilaria gracilis GNS1m male)
ATGGCGCTGTACCAAGATTCAACACAGGCACGTTTCTGGTCCCTCACAGC
AGAAGACGTTCACTCGCTTCGCCTTCAAACTCATCAGCGCGCCGTATCAA
CGCGTCCGGGCACCGACCAACTGTTGTCTCCAGACGATGAAGCTCTCATT
CGTCGTCATCACGAACGACGAATTCTTCGCTTTAACCGCGCCAATCACCT
GCCTGATAAACTGGCCGCAACTGCTGTCATGTATTTCAAACGGTTTTTCT
TGCATCGATCAGTCATGGATTACAACCCTTCCGTCATTGCTCTTTCTGCT
CTTTACGCCGCCAGTAAAGTGGAGGAGGTTGTTTTCGATGCACAGGATCT
AGTTGCACGTTTTGATGCCTGTGTGAATGGGGTTGCGTCGGACATTGCTT
TGGAGCACACTCCAATGTCTGCAGATCAATGTGCTGATAGAGCTTCTACC
GATGCCATTCTTAACACCGAGCTTTGGTTTTTGCAACAGATCAATTTTCA
TCTCATTTGTTATCATCCGTTCAAATCACTCGGCATTGTACGAGAGAAGC
TTCATTCATCAAATGTATGCGGACAGGGGCAACAAGCCACCCACTTATTA
TCCGAACTAATCGCAACAGCGGAGAACATAATTCGAAGAAGAGCATTATT
AACTGATTTACCTCTATCCCATCCGCCTGCCGTCATCGCCATAGCTGCCA
CTATAATTGCAGCAGAAGCTAAATCAAATCCACAGGAGGAACAGCTATTA
CAAGTTCTAGCCGGAACTGATAACAAAGCCGTTAATAGAATACGAACTGC
GATTCAAATTTTGCGTCTTCTCCCTGACCACACTCCTGAGGATGAAGCCA
GTCAAGTTGCTGCACTTGAGAAAAGGCGAAAAGCTGTGCAGAAGAACATT
AACGATCCTATGAGTAGCGAATACAAGGAAATGCAGATGCAACAGCTAAG
AGAGGAGGATGAGGAGGAGTCGGAAAGGGCCAGAACGTTTCAAGAAAAAC
TTAAACGTAGATCGGAAGCTTTGTTAGGATTTGCTAACATGGACATATCA
AGTAAAAAGAGAAAAATGGAAACATGA
back to top