Ggra900.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra900.t1
Unique NameGgra900.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length316
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000049_piloncontigtig00000049_pilon:183463..184410 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra900Ggra900Gracilaria gracilis GNS1m malegenetig00000049_pilon 183463..184410 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra900.t1.stop1Ggra900.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000049_pilon 183463..183465 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra900.t1.CDS1Ggra900.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000049_pilon 183463..184410 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra900.t1.exon1Ggra900.t1.exon1Gracilaria gracilis GNS1m maleexontig00000049_pilon 183463..184410 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra900.t1.start1Ggra900.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000049_pilon 184408..184410 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra900.t1Ggra900.t1Gracilaria gracilis GNS1m malepolypeptidetig00000049_pilon 183463..184410 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra900.t1 ID=Ggra900.t1|Name=Ggra900.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=316bp
MYYSFVPTQSRCQQLAVLLISLIVLALSPISFLFLSSRLPLPRPPVESPT
SAKLALLTNDSLLEELSDNKQFVYFPSANVLLASIAKGGSTSLYHWFFHG
LLGQEYDNRRCREHVSPNVQNIRGPCWNSEAKYLSDLSKREQRSVLTSHN
TLRMAVQRDPFERLISAFNDKVECITDKYNADLGYSVIVPTLREQARLPH
SPRPCMNISEFATALDRIRQQKVIPLDMINAHFRPQQLYFDEVPYDMVLD
VGEIGNVTILKPVLERLPYREMVKDGIPHFNKVGRGELVIPENAAKKLYR
FAMESQLGELRHLSP*
back to top

spliced messenger RNA

>Ggra900.t1 ID=Ggra900.t1|Name=Ggra900.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=948bp|location=Sequence derived from alignment at tig00000049_pilon:183463..184410- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACTACTCTTTCGTCCCTACACAAAGTCGTTGTCAACAGCTCGCCGT
CCTTCTCATATCCCTCATCGTGCTGGCACTGAGTCCGATCTCCTTTCTGT
TTCTCAGCTCTCGTTTACCTCTCCCGCGGCCGCCAGTGGAAAGTCCAACG
TCGGCCAAACTCGCGCTACTTACGAACGACTCCCTACTCGAAGAACTGAG
CGACAACAAGCAGTTTGTCTACTTTCCGTCCGCCAACGTTCTGCTAGCCT
CCATCGCGAAGGGCGGAAGCACCTCTCTGTATCACTGGTTCTTTCACGGC
CTTCTTGGCCAAGAGTACGACAACCGACGCTGTCGAGAGCACGTGAGCCC
CAACGTGCAAAACATCCGTGGACCGTGTTGGAACTCTGAAGCCAAGTACC
TATCCGACCTTTCAAAACGTGAGCAACGAAGCGTCCTCACGTCACACAAC
ACGTTGCGCATGGCAGTCCAGCGCGACCCGTTCGAGAGACTTATCTCGGC
GTTCAACGACAAGGTCGAGTGCATCACCGACAAGTACAATGCCGATCTGG
GCTACAGCGTTATCGTGCCCACTCTGAGGGAGCAGGCCCGTCTGCCGCAC
TCGCCAAGACCGTGTATGAACATTAGTGAGTTTGCCACTGCGCTCGATCG
CATCCGCCAACAAAAGGTGATTCCACTGGACATGATAAACGCCCATTTTC
GGCCGCAGCAACTTTACTTTGATGAGGTGCCGTACGATATGGTGCTCGAT
GTGGGCGAGATTGGCAACGTGACAATTCTGAAGCCTGTATTGGAGCGGTT
GCCGTACAGAGAGATGGTGAAAGACGGCATTCCGCACTTCAATAAGGTTG
GGCGTGGAGAATTGGTGATTCCTGAGAATGCAGCCAAGAAGCTGTATCGC
TTTGCAATGGAGTCCCAATTAGGAGAGTTGCGCCATTTGTCTCCTTGA
back to top

protein sequence of Ggra900.t1

>Ggra900.t1 ID=Ggra900.t1|Name=Ggra900.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=316bp
MYYSFVPTQSRCQQLAVLLISLIVLALSPISFLFLSSRLPLPRPPVESPT
SAKLALLTNDSLLEELSDNKQFVYFPSANVLLASIAKGGSTSLYHWFFHG
LLGQEYDNRRCREHVSPNVQNIRGPCWNSEAKYLSDLSKREQRSVLTSHN
TLRMAVQRDPFERLISAFNDKVECITDKYNADLGYSVIVPTLREQARLPH
SPRPCMNISEFATALDRIRQQKVIPLDMINAHFRPQQLYFDEVPYDMVLD
VGEIGNVTILKPVLERLPYREMVKDGIPHFNKVGRGELVIPENAAKKLYR
FAMESQLGELRHLSP*
back to top

mRNA from alignment at tig00000049_pilon:183463..184410-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra900.t1 ID=Ggra900.t1|Name=Ggra900.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=948bp|location=Sequence derived from alignment at tig00000049_pilon:183463..184410- (Gracilaria gracilis GNS1m male)
ATGTACTACTCTTTCGTCCCTACACAAAGTCGTTGTCAACAGCTCGCCGT
CCTTCTCATATCCCTCATCGTGCTGGCACTGAGTCCGATCTCCTTTCTGT
TTCTCAGCTCTCGTTTACCTCTCCCGCGGCCGCCAGTGGAAAGTCCAACG
TCGGCCAAACTCGCGCTACTTACGAACGACTCCCTACTCGAAGAACTGAG
CGACAACAAGCAGTTTGTCTACTTTCCGTCCGCCAACGTTCTGCTAGCCT
CCATCGCGAAGGGCGGAAGCACCTCTCTGTATCACTGGTTCTTTCACGGC
CTTCTTGGCCAAGAGTACGACAACCGACGCTGTCGAGAGCACGTGAGCCC
CAACGTGCAAAACATCCGTGGACCGTGTTGGAACTCTGAAGCCAAGTACC
TATCCGACCTTTCAAAACGTGAGCAACGAAGCGTCCTCACGTCACACAAC
ACGTTGCGCATGGCAGTCCAGCGCGACCCGTTCGAGAGACTTATCTCGGC
GTTCAACGACAAGGTCGAGTGCATCACCGACAAGTACAATGCCGATCTGG
GCTACAGCGTTATCGTGCCCACTCTGAGGGAGCAGGCCCGTCTGCCGCAC
TCGCCAAGACCGTGTATGAACATTAGTGAGTTTGCCACTGCGCTCGATCG
CATCCGCCAACAAAAGGTGATTCCACTGGACATGATAAACGCCCATTTTC
GGCCGCAGCAACTTTACTTTGATGAGGTGCCGTACGATATGGTGCTCGAT
GTGGGCGAGATTGGCAACGTGACAATTCTGAAGCCTGTATTGGAGCGGTT
GCCGTACAGAGAGATGGTGAAAGACGGCATTCCGCACTTCAATAAGGTTG
GGCGTGGAGAATTGGTGATTCCTGAGAATGCAGCCAAGAAGCTGTATCGC
TTTGCAATGGAGTCCCAATTAGGAGAGTTGCGCCATTTGTCTCCTTGA
back to top

Coding sequence (CDS) from alignment at tig00000049_pilon:183463..184410-

>Ggra900.t1 ID=Ggra900.t1|Name=Ggra900.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=948bp|location=Sequence derived from alignment at tig00000049_pilon:183463..184410- (Gracilaria gracilis GNS1m male)
ATGTACTACTCTTTCGTCCCTACACAAAGTCGTTGTCAACAGCTCGCCGT
CCTTCTCATATCCCTCATCGTGCTGGCACTGAGTCCGATCTCCTTTCTGT
TTCTCAGCTCTCGTTTACCTCTCCCGCGGCCGCCAGTGGAAAGTCCAACG
TCGGCCAAACTCGCGCTACTTACGAACGACTCCCTACTCGAAGAACTGAG
CGACAACAAGCAGTTTGTCTACTTTCCGTCCGCCAACGTTCTGCTAGCCT
CCATCGCGAAGGGCGGAAGCACCTCTCTGTATCACTGGTTCTTTCACGGC
CTTCTTGGCCAAGAGTACGACAACCGACGCTGTCGAGAGCACGTGAGCCC
CAACGTGCAAAACATCCGTGGACCGTGTTGGAACTCTGAAGCCAAGTACC
TATCCGACCTTTCAAAACGTGAGCAACGAAGCGTCCTCACGTCACACAAC
ACGTTGCGCATGGCAGTCCAGCGCGACCCGTTCGAGAGACTTATCTCGGC
GTTCAACGACAAGGTCGAGTGCATCACCGACAAGTACAATGCCGATCTGG
GCTACAGCGTTATCGTGCCCACTCTGAGGGAGCAGGCCCGTCTGCCGCAC
TCGCCAAGACCGTGTATGAACATTAGTGAGTTTGCCACTGCGCTCGATCG
CATCCGCCAACAAAAGGTGATTCCACTGGACATGATAAACGCCCATTTTC
GGCCGCAGCAACTTTACTTTGATGAGGTGCCGTACGATATGGTGCTCGAT
GTGGGCGAGATTGGCAACGTGACAATTCTGAAGCCTGTATTGGAGCGGTT
GCCGTACAGAGAGATGGTGAAAGACGGCATTCCGCACTTCAATAAGGTTG
GGCGTGGAGAATTGGTGATTCCTGAGAATGCAGCCAAGAAGCTGTATCGC
TTTGCAATGGAGTCCCAATTAGGAGAGTTGCGCCATTTGTCTCCTTGA
back to top