Ggra8994.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8994.t1
Unique NameGgra8994.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length548
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:1076859..1078502 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5888.CAK69321
PFAMsCyt-b5,FA_desaturase,GWT1
Max annot lvl2759|Eukaryota
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006636,GO:0006950,GO:0007275,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009266,GO:0009408,GO:0009628,GO:0009987,GO:0016020,GO:0016053,GO:0016491,GO:0019752,GO:0032501,GO:0032502,GO:0032787,GO:0033559,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044464,GO:0046394,GO:0048856,GO:0050896,GO:0055114,GO:0071704,GO:0071944,GO:0072330,GO:1901576
Evalue1.11e-156
EggNOG OGsCOG3239@1|root,KOG4232@2759|Eukaryota
Descriptionunsaturated fatty acid biosynthetic process
COG categoryI
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8994Ggra8994Gracilaria gracilis GNS1m malegenetig00000860_pilon 1076859..1078502 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8994.t1.stop1Ggra8994.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 1076859..1076861 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8994.t1.CDS1Ggra8994.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 1076859..1078502 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8994.t1.exon1Ggra8994.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 1076859..1078502 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8994.t1.start1Ggra8994.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 1078500..1078502 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8994.t1Ggra8994.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 1076859..1078502 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8994.t1 ID=Ggra8994.t1|Name=Ggra8994.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=548bp
MHAVARRYMTAAACVSLASAIIAALLVTRTALPLALYLPVLAALLELVAC
AYDVTLRRVRARRHAARAAAAAAAAAAAASRDKLAAAPSAVFTWQQLAQH
NHEESAWIAVHGRVYDVTQFVDAHPGGRELLLLAVGRDATDLFQSYHPFT
ERPEKVLQKYHIGSLGTFEHPVYKPDSGFYKEACAAVKQHFERRGVHSKE
PRTAFVRMAPVYVLFAASFYAAFVSAQSSLPLRVAAALLLGVAQGMPLTG
WMHDASHSAVGRSERWWWAIGRFALDYMCGSSMLSWRNQHVIGHHVYTNV
MGADPDLPTSLQADARRLLPEQRWAPVYRWQHWYLPPLYGVLAVKSRLQD
VTHIYSRLVNGPIRVNPIIVQDYLRMLSSKCFWAFYRLVLPLVLLRHVLP
LWQFALLLSLTEMTTGYWLAFNFQVSHVSTHAHFLFSDVRKRADAKCPAV
FDDEWAHSQIRTTVDYAHGSAAAAYLSGALNYQTVHHLFPTVSQYHYAAI
TPVVMEVARRHGLHFNVLPAFPHALAAHLRHLRQMGLDGTPAELKLD*
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spliced messenger RNA

>Ggra8994.t1 ID=Ggra8994.t1|Name=Ggra8994.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1644bp|location=Sequence derived from alignment at tig00000860_pilon:1076859..1078502- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATGCCGTTGCGCGCCGCTACATGACGGCGGCCGCGTGCGTGTCGCT
GGCGTCGGCCATCATCGCCGCGCTGCTGGTGACGCGCACCGCGCTGCCGC
TGGCGCTGTACCTTCCCGTTCTGGCCGCGCTCCTCGAGCTGGTAGCGTGT
GCGTACGATGTGACTCTACGGCGCGTGCGCGCGCGTCGCCACGCGGCGCG
CGCTGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCTTCGCGCGACAAGC
TCGCCGCTGCTCCCTCGGCCGTGTTCACCTGGCAGCAGCTGGCGCAGCAC
AACCACGAAGAGTCGGCGTGGATCGCGGTGCACGGGCGTGTGTACGACGT
GACGCAGTTTGTGGACGCGCACCCCGGCGGGCGCGAGCTGCTGCTGCTAG
CGGTGGGGCGCGACGCCACGGATCTGTTCCAGTCGTACCACCCGTTCACG
GAGCGGCCGGAAAAGGTGCTGCAAAAGTACCACATCGGGTCGCTGGGCAC
GTTCGAGCACCCGGTGTACAAGCCGGACTCGGGCTTTTACAAGGAGGCGT
GCGCCGCGGTGAAGCAGCACTTTGAGCGGCGCGGCGTGCACAGCAAGGAG
CCGCGCACGGCGTTTGTGCGCATGGCGCCGGTGTACGTGCTGTTCGCGGC
GTCGTTCTACGCGGCGTTTGTGAGCGCGCAGTCGTCGCTGCCGCTGCGCG
TGGCGGCGGCGCTGCTGCTGGGCGTGGCGCAGGGCATGCCGCTCACGGGC
TGGATGCACGACGCGTCGCACAGCGCGGTGGGTCGCTCCGAACGCTGGTG
GTGGGCCATTGGCCGCTTCGCGCTCGACTACATGTGCGGCTCGTCCATGT
TGTCGTGGCGTAACCAACACGTGATCGGCCACCATGTGTACACCAACGTG
ATGGGCGCCGACCCCGACCTGCCCACGTCGCTGCAGGCGGACGCGCGTCG
GCTGCTGCCAGAGCAGCGCTGGGCGCCCGTGTACCGCTGGCAGCATTGGT
ATCTGCCGCCGCTGTACGGCGTGCTGGCCGTCAAGTCGCGCCTGCAGGAT
GTGACGCACATCTACTCGCGGCTGGTCAACGGCCCCATCCGCGTCAACCC
CATCATCGTGCAGGACTACCTGCGCATGCTGTCGTCCAAGTGCTTCTGGG
CCTTTTACCGCCTCGTGCTGCCGTTGGTGCTGCTGCGCCATGTGCTGCCG
CTGTGGCAGTTTGCGCTGCTGCTGTCGCTCACCGAGATGACCACCGGCTA
CTGGCTGGCGTTCAACTTCCAGGTCAGTCATGTGTCCACGCACGCGCACT
TTTTGTTCTCCGACGTGCGCAAGCGCGCCGACGCCAAGTGCCCCGCCGTG
TTTGACGACGAGTGGGCGCACTCGCAGATCCGTACCACCGTCGACTACGC
GCATGGCAGCGCCGCCGCCGCTTATCTGTCCGGAGCGCTCAACTACCAGA
CGGTGCATCACCTGTTCCCTACCGTCAGTCAGTACCATTACGCCGCCATC
ACGCCCGTGGTCATGGAGGTTGCGCGCCGACACGGGCTGCACTTCAACGT
GTTGCCCGCCTTCCCGCACGCGCTTGCCGCGCATCTACGTCACCTGCGTC
AAATGGGGCTCGATGGCACGCCTGCCGAACTCAAGCTGGACTGA
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protein sequence of Ggra8994.t1

>Ggra8994.t1 ID=Ggra8994.t1|Name=Ggra8994.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=548bp
MHAVARRYMTAAACVSLASAIIAALLVTRTALPLALYLPVLAALLELVAC
AYDVTLRRVRARRHAARAAAAAAAAAAAASRDKLAAAPSAVFTWQQLAQH
NHEESAWIAVHGRVYDVTQFVDAHPGGRELLLLAVGRDATDLFQSYHPFT
ERPEKVLQKYHIGSLGTFEHPVYKPDSGFYKEACAAVKQHFERRGVHSKE
PRTAFVRMAPVYVLFAASFYAAFVSAQSSLPLRVAAALLLGVAQGMPLTG
WMHDASHSAVGRSERWWWAIGRFALDYMCGSSMLSWRNQHVIGHHVYTNV
MGADPDLPTSLQADARRLLPEQRWAPVYRWQHWYLPPLYGVLAVKSRLQD
VTHIYSRLVNGPIRVNPIIVQDYLRMLSSKCFWAFYRLVLPLVLLRHVLP
LWQFALLLSLTEMTTGYWLAFNFQVSHVSTHAHFLFSDVRKRADAKCPAV
FDDEWAHSQIRTTVDYAHGSAAAAYLSGALNYQTVHHLFPTVSQYHYAAI
TPVVMEVARRHGLHFNVLPAFPHALAAHLRHLRQMGLDGTPAELKLD*
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mRNA from alignment at tig00000860_pilon:1076859..1078502-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8994.t1 ID=Ggra8994.t1|Name=Ggra8994.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1644bp|location=Sequence derived from alignment at tig00000860_pilon:1076859..1078502- (Gracilaria gracilis GNS1m male)
ATGCATGCCGTTGCGCGCCGCTACATGACGGCGGCCGCGTGCGTGTCGCT
GGCGTCGGCCATCATCGCCGCGCTGCTGGTGACGCGCACCGCGCTGCCGC
TGGCGCTGTACCTTCCCGTTCTGGCCGCGCTCCTCGAGCTGGTAGCGTGT
GCGTACGATGTGACTCTACGGCGCGTGCGCGCGCGTCGCCACGCGGCGCG
CGCTGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCTTCGCGCGACAAGC
TCGCCGCTGCTCCCTCGGCCGTGTTCACCTGGCAGCAGCTGGCGCAGCAC
AACCACGAAGAGTCGGCGTGGATCGCGGTGCACGGGCGTGTGTACGACGT
GACGCAGTTTGTGGACGCGCACCCCGGCGGGCGCGAGCTGCTGCTGCTAG
CGGTGGGGCGCGACGCCACGGATCTGTTCCAGTCGTACCACCCGTTCACG
GAGCGGCCGGAAAAGGTGCTGCAAAAGTACCACATCGGGTCGCTGGGCAC
GTTCGAGCACCCGGTGTACAAGCCGGACTCGGGCTTTTACAAGGAGGCGT
GCGCCGCGGTGAAGCAGCACTTTGAGCGGCGCGGCGTGCACAGCAAGGAG
CCGCGCACGGCGTTTGTGCGCATGGCGCCGGTGTACGTGCTGTTCGCGGC
GTCGTTCTACGCGGCGTTTGTGAGCGCGCAGTCGTCGCTGCCGCTGCGCG
TGGCGGCGGCGCTGCTGCTGGGCGTGGCGCAGGGCATGCCGCTCACGGGC
TGGATGCACGACGCGTCGCACAGCGCGGTGGGTCGCTCCGAACGCTGGTG
GTGGGCCATTGGCCGCTTCGCGCTCGACTACATGTGCGGCTCGTCCATGT
TGTCGTGGCGTAACCAACACGTGATCGGCCACCATGTGTACACCAACGTG
ATGGGCGCCGACCCCGACCTGCCCACGTCGCTGCAGGCGGACGCGCGTCG
GCTGCTGCCAGAGCAGCGCTGGGCGCCCGTGTACCGCTGGCAGCATTGGT
ATCTGCCGCCGCTGTACGGCGTGCTGGCCGTCAAGTCGCGCCTGCAGGAT
GTGACGCACATCTACTCGCGGCTGGTCAACGGCCCCATCCGCGTCAACCC
CATCATCGTGCAGGACTACCTGCGCATGCTGTCGTCCAAGTGCTTCTGGG
CCTTTTACCGCCTCGTGCTGCCGTTGGTGCTGCTGCGCCATGTGCTGCCG
CTGTGGCAGTTTGCGCTGCTGCTGTCGCTCACCGAGATGACCACCGGCTA
CTGGCTGGCGTTCAACTTCCAGGTCAGTCATGTGTCCACGCACGCGCACT
TTTTGTTCTCCGACGTGCGCAAGCGCGCCGACGCCAAGTGCCCCGCCGTG
TTTGACGACGAGTGGGCGCACTCGCAGATCCGTACCACCGTCGACTACGC
GCATGGCAGCGCCGCCGCCGCTTATCTGTCCGGAGCGCTCAACTACCAGA
CGGTGCATCACCTGTTCCCTACCGTCAGTCAGTACCATTACGCCGCCATC
ACGCCCGTGGTCATGGAGGTTGCGCGCCGACACGGGCTGCACTTCAACGT
GTTGCCCGCCTTCCCGCACGCGCTTGCCGCGCATCTACGTCACCTGCGTC
AAATGGGGCTCGATGGCACGCCTGCCGAACTCAAGCTGGACTGA
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Coding sequence (CDS) from alignment at tig00000860_pilon:1076859..1078502-

>Ggra8994.t1 ID=Ggra8994.t1|Name=Ggra8994.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1644bp|location=Sequence derived from alignment at tig00000860_pilon:1076859..1078502- (Gracilaria gracilis GNS1m male)
ATGCATGCCGTTGCGCGCCGCTACATGACGGCGGCCGCGTGCGTGTCGCT
GGCGTCGGCCATCATCGCCGCGCTGCTGGTGACGCGCACCGCGCTGCCGC
TGGCGCTGTACCTTCCCGTTCTGGCCGCGCTCCTCGAGCTGGTAGCGTGT
GCGTACGATGTGACTCTACGGCGCGTGCGCGCGCGTCGCCACGCGGCGCG
CGCTGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCTTCGCGCGACAAGC
TCGCCGCTGCTCCCTCGGCCGTGTTCACCTGGCAGCAGCTGGCGCAGCAC
AACCACGAAGAGTCGGCGTGGATCGCGGTGCACGGGCGTGTGTACGACGT
GACGCAGTTTGTGGACGCGCACCCCGGCGGGCGCGAGCTGCTGCTGCTAG
CGGTGGGGCGCGACGCCACGGATCTGTTCCAGTCGTACCACCCGTTCACG
GAGCGGCCGGAAAAGGTGCTGCAAAAGTACCACATCGGGTCGCTGGGCAC
GTTCGAGCACCCGGTGTACAAGCCGGACTCGGGCTTTTACAAGGAGGCGT
GCGCCGCGGTGAAGCAGCACTTTGAGCGGCGCGGCGTGCACAGCAAGGAG
CCGCGCACGGCGTTTGTGCGCATGGCGCCGGTGTACGTGCTGTTCGCGGC
GTCGTTCTACGCGGCGTTTGTGAGCGCGCAGTCGTCGCTGCCGCTGCGCG
TGGCGGCGGCGCTGCTGCTGGGCGTGGCGCAGGGCATGCCGCTCACGGGC
TGGATGCACGACGCGTCGCACAGCGCGGTGGGTCGCTCCGAACGCTGGTG
GTGGGCCATTGGCCGCTTCGCGCTCGACTACATGTGCGGCTCGTCCATGT
TGTCGTGGCGTAACCAACACGTGATCGGCCACCATGTGTACACCAACGTG
ATGGGCGCCGACCCCGACCTGCCCACGTCGCTGCAGGCGGACGCGCGTCG
GCTGCTGCCAGAGCAGCGCTGGGCGCCCGTGTACCGCTGGCAGCATTGGT
ATCTGCCGCCGCTGTACGGCGTGCTGGCCGTCAAGTCGCGCCTGCAGGAT
GTGACGCACATCTACTCGCGGCTGGTCAACGGCCCCATCCGCGTCAACCC
CATCATCGTGCAGGACTACCTGCGCATGCTGTCGTCCAAGTGCTTCTGGG
CCTTTTACCGCCTCGTGCTGCCGTTGGTGCTGCTGCGCCATGTGCTGCCG
CTGTGGCAGTTTGCGCTGCTGCTGTCGCTCACCGAGATGACCACCGGCTA
CTGGCTGGCGTTCAACTTCCAGGTCAGTCATGTGTCCACGCACGCGCACT
TTTTGTTCTCCGACGTGCGCAAGCGCGCCGACGCCAAGTGCCCCGCCGTG
TTTGACGACGAGTGGGCGCACTCGCAGATCCGTACCACCGTCGACTACGC
GCATGGCAGCGCCGCCGCCGCTTATCTGTCCGGAGCGCTCAACTACCAGA
CGGTGCATCACCTGTTCCCTACCGTCAGTCAGTACCATTACGCCGCCATC
ACGCCCGTGGTCATGGAGGTTGCGCGCCGACACGGGCTGCACTTCAACGT
GTTGCCCGCCTTCCCGCACGCGCTTGCCGCGCATCTACGTCACCTGCGTC
AAATGGGGCTCGATGGCACGCCTGCCGAACTCAAGCTGGACTGA
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