Ggra8992.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8992.t1
Unique NameGgra8992.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length293
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:1074903..1075781 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8992Ggra8992Gracilaria gracilis GNS1m malegenetig00000860_pilon 1074903..1075781 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8992.t1.start1Ggra8992.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 1074903..1074905 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8992.t1.CDS1Ggra8992.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 1074903..1075781 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8992.t1.exon1Ggra8992.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 1074903..1075781 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8992.t1.stop1Ggra8992.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 1075779..1075781 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8992.t1Ggra8992.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 1074903..1075781 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8992.t1 ID=Ggra8992.t1|Name=Ggra8992.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=293bp
MSDIVDEILAASQRSSSHMWFSPPQPQQPVFPSPRGVQHDFSPLTSWLDP
ALSSLSKPVHPPVLPTATATAAAAAAAAAAAAAAAAPLVVHQQPRASPSP
PPPQQPPSPSSSSPSSSSSPPKRPLPAGARAAPPKRAARAPAPRVLHATA
VMPPCAKSILERRERAIREGRRKDAKLSDAERRILRRLRNRESAERCRLR
RLQQAALLQQRIAHMQRENHRLLRMAAQYERTIRRLELVIRQLSDAGAAP
PPPAPPPPPPQQSQSQSQLSQQPLAAALAPAPREAARRGGAV*
back to top

spliced messenger RNA

>Ggra8992.t1 ID=Ggra8992.t1|Name=Ggra8992.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=879bp|location=Sequence derived from alignment at tig00000860_pilon:1074903..1075781+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGATATCGTGGACGAGATCCTGGCCGCGTCGCAGCGCAGCTCGTC
GCACATGTGGTTCTCGCCGCCGCAGCCGCAGCAGCCCGTGTTCCCGTCGC
CGCGCGGCGTACAGCACGACTTTTCGCCCCTCACGTCCTGGCTGGACCCC
GCGCTGTCCTCCCTGTCCAAGCCTGTTCACCcgcccgtgctgcccactgc
cactgccaccgccgccgctgccgccgccgctgctgccgccgccgctgctg
ccgccgccccgctcgtcgtgcaccaacagccgcgcgcgtcgccatcgccg
ccaccgccgcagcagccgccgtcgccctcgtcgtcgtcgccctcgtcgtc
gtcgtcgccgccgaaacgcccgctgcccgccggcgcgcgcgcggcgccgc
cCAAgcgcgcggcgcgcgcgcccgcgccgcgcgtgctgcacgcCACGGCG
GTGATGCCGCCGTGCGCCAAGAGCATCCTGGAGCGGCGCGAGCGCGCCAT
CCGCGAGGGGCGGCGCAAGGACGCCAAGCTGTCCGACGCGGAGCGCCGCA
TCCTGCGCCGCCTGCGCAACCGCGAGTCGGCCGAGCGCTGCCGCCTGCGC
CGCCTGCAGCAGGCCGCGCTGCTGCAGCAGCGCATCGCGCACATGCAGCG
CGAGAACCACCGCCTGCTGCGCATGGCCGCCCAGTACGAGCGCACCATCC
GCCGCCTCGAGCTTGTTATTCGCCAGCTTTCGGACGCTGGCGCTGcgccg
ccgccgcccgcgccgccgccgccgccgccgcAGCAGTCGCAGTCGCAGTC
GCAGCTGTCACAACAGCcgctggcggcggcgttggcgccggcgccgcggg
aggcggcgcggcgcggcggcgcggtgtga
back to top

protein sequence of Ggra8992.t1

>Ggra8992.t1 ID=Ggra8992.t1|Name=Ggra8992.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=293bp
MSDIVDEILAASQRSSSHMWFSPPQPQQPVFPSPRGVQHDFSPLTSWLDP
ALSSLSKPVHPPVLPTATATAAAAAAAAAAAAAAAAPLVVHQQPRASPSP
PPPQQPPSPSSSSPSSSSSPPKRPLPAGARAAPPKRAARAPAPRVLHATA
VMPPCAKSILERRERAIREGRRKDAKLSDAERRILRRLRNRESAERCRLR
RLQQAALLQQRIAHMQRENHRLLRMAAQYERTIRRLELVIRQLSDAGAAP
PPPAPPPPPPQQSQSQSQLSQQPLAAALAPAPREAARRGGAV*
back to top

mRNA from alignment at tig00000860_pilon:1074903..1075781+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8992.t1 ID=Ggra8992.t1|Name=Ggra8992.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=879bp|location=Sequence derived from alignment at tig00000860_pilon:1074903..1075781+ (Gracilaria gracilis GNS1m male)
ATGTCCGATATCGTGGACGAGATCCTGGCCGCGTCGCAGCGCAGCTCGTC
GCACATGTGGTTCTCGCCGCCGCAGCCGCAGCAGCCCGTGTTCCCGTCGC
CGCGCGGCGTACAGCACGACTTTTCGCCCCTCACGTCCTGGCTGGACCCC
GCGCTGTCCTCCCTGTCCAAGCCTGTTCACCcgcccgtgctgcccactgc
cactgccaccgccgccgctgccgccgccgctgctgccgccgccgctgctg
ccgccgccccgctcgtcgtgcaccaacagccgcgcgcgtcgccatcgccg
ccaccgccgcagcagccgccgtcgccctcgtcgtcgtcgccctcgtcgtc
gtcgtcgccgccgaaacgcccgctgcccgccggcgcgcgcgcggcgccgc
cCAAgcgcgcggcgcgcgcgcccgcgccgcgcgtgctgcacgcCACGGCG
GTGATGCCGCCGTGCGCCAAGAGCATCCTGGAGCGGCGCGAGCGCGCCAT
CCGCGAGGGGCGGCGCAAGGACGCCAAGCTGTCCGACGCGGAGCGCCGCA
TCCTGCGCCGCCTGCGCAACCGCGAGTCGGCCGAGCGCTGCCGCCTGCGC
CGCCTGCAGCAGGCCGCGCTGCTGCAGCAGCGCATCGCGCACATGCAGCG
CGAGAACCACCGCCTGCTGCGCATGGCCGCCCAGTACGAGCGCACCATCC
GCCGCCTCGAGCTTGTTATTCGCCAGCTTTCGGACGCTGGCGCTGcgccg
ccgccgcccgcgccgccgccgccgccgccgcAGCAGTCGCAGTCGCAGTC
GCAGCTGTCACAACAGCcgctggcggcggcgttggcgccggcgccgcggg
aggcggcgcggcgcggcggcgcggtgtga
back to top

Coding sequence (CDS) from alignment at tig00000860_pilon:1074903..1075781+

>Ggra8992.t1 ID=Ggra8992.t1|Name=Ggra8992.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=879bp|location=Sequence derived from alignment at tig00000860_pilon:1074903..1075781+ (Gracilaria gracilis GNS1m male)
ATGTCCGATATCGTGGACGAGATCCTGGCCGCGTCGCAGCGCAGCTCGTC
GCACATGTGGTTCTCGCCGCCGCAGCCGCAGCAGCCCGTGTTCCCGTCGC
CGCGCGGCGTACAGCACGACTTTTCGCCCCTCACGTCCTGGCTGGACCCC
GCGCTGTCCTCCCTGTCCAAGCCTGTTCACCcgcccgtgctgcccactgc
cactgccaccgccgccgctgccgccgccgctgctgccgccgccgctgctg
ccgccgccccgctcgtcgtgcaccaacagccgcgcgcgtcgccatcgccg
ccaccgccgcagcagccgccgtcgccctcgtcgtcgtcgccctcgtcgtc
gtcgtcgccgccgaaacgcccgctgcccgccggcgcgcgcgcggcgccgc
cCAAgcgcgcggcgcgcgcgcccgcgccgcgcgtgctgcacgcCACGGCG
GTGATGCCGCCGTGCGCCAAGAGCATCCTGGAGCGGCGCGAGCGCGCCAT
CCGCGAGGGGCGGCGCAAGGACGCCAAGCTGTCCGACGCGGAGCGCCGCA
TCCTGCGCCGCCTGCGCAACCGCGAGTCGGCCGAGCGCTGCCGCCTGCGC
CGCCTGCAGCAGGCCGCGCTGCTGCAGCAGCGCATCGCGCACATGCAGCG
CGAGAACCACCGCCTGCTGCGCATGGCCGCCCAGTACGAGCGCACCATCC
GCCGCCTCGAGCTTGTTATTCGCCAGCTTTCGGACGCTGGCGCTGcgccg
ccgccgcccgcgccgccgccgccgccgccgcAGCAGTCGCAGTCGCAGTC
GCAGCTGTCACAACAGCcgctggcggcggcgttggcgccggcgccgcggg
aggcggcgcggcgcggcggcgcggtgtga
back to top