Ggra899.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra899.t1
Unique NameGgra899.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length241
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000049_piloncontigtig00000049_pilon:169596..172140 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra899Ggra899Gracilaria gracilis GNS1m malegenetig00000049_pilon 169596..172140 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra899.t1Ggra899.t1Gracilaria gracilis GNS1m malepolypeptidetig00000049_pilon 169596..172140 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra899.t1.start1Ggra899.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000049_pilon 169596..169598 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra899.t1.CDS1Ggra899.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000049_pilon 169596..170257 +
Ggra899.t1.CDS2Ggra899.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000049_pilon 172080..172140 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra899.t1.exon1Ggra899.t1.exon1Gracilaria gracilis GNS1m maleexontig00000049_pilon 169596..170257 +
Ggra899.t1.exon2Ggra899.t1.exon2Gracilaria gracilis GNS1m maleexontig00000049_pilon 172080..172140 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra899.t1.intron1Ggra899.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000049_pilon 170258..172079 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra899.t1.stop1Ggra899.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000049_pilon 172138..172140 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra899.t1 ID=Ggra899.t1|Name=Ggra899.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=241bp
MSSTTPERPSTPSIRTEDLGNAALRIQRSNSTLSLTLNPPAEQRVTPNMT
QPRISPHAHATPTFMTRGRKRSANESELPPLDAVARRRRRAAEKNNEAQV
GGPFQPTSRRRAAEKNNEAQFGSPFQPTSRRHRTVDRNEQASEKLQQDAR
PVPPVAGLPSSPRGRKRTATQAGLRSAERPARRRRCAQERDVEDFHAPPI
PSAAASSSSTGSDAVDAATLESRIHDDEGVIELVDDSLIR*
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spliced messenger RNA

>Ggra899.t1 ID=Ggra899.t1|Name=Ggra899.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=723bp|location=Sequence derived from alignment at tig00000049_pilon:169596..172140+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTTCTACTACACCAGAACGCCCCTCAACACCTTCTATCCGTACGGA
GGATCTTGGAAACGCAGCCCTGCGCATCCAGCGTTCCAATTCAACGCTGT
CACTTACGCTGAATCCCCCAGCAGAACAGCGTGTGACTCCAAACATGACC
CAGCCACGCATTTCACCGCACGCCCACGCCACTCCGACCTTCATGACCCG
CGGCCGAAAACGCAGCGCGAATGAATCGGAGCTGCCTCCCTTGGATGCGG
TTGCTCGTCGTCGCCGTCGAGCCGCCGAGAAGAATAACGAAGCCCAAGTT
GGGGGCCCGTTCCAGCCCACTTCCCGCCGTCGAGCCGCCGAGAAGAATAA
CGAAGCCCAGTTTGGGAGCCCGTTCCAGCCCACTTCCCGCCGTCACCGAA
CAGTCGACCGCAATGAACAGGCGTCGGAGAAGCTTCAACAAGATGCACGG
CCCGTGCCACCAGTTGCCGGGCTGCCGTCTTCGCCGCGGGGCCGCAAACG
CACGGCTACCCAAGCTGGGCTCAGAAGCGCAGAACGGCCCGCTCGACGTC
GTCGCTGTGCACAAGAGAGGGATGTGGAAGACTTTCACGCGCCGCCCATA
CCGTCTGCTGCAGCGTCGAGCTCATCGACGGGCAGCGATGCTGTCGACGC
cgccacgctcgaGTCACGGATTCACGACGATGAAGGCGTCATCGAGCTCG
TCGATGATTCGTTGATTCGTTGA
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protein sequence of Ggra899.t1

>Ggra899.t1 ID=Ggra899.t1|Name=Ggra899.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=241bp
MSSTTPERPSTPSIRTEDLGNAALRIQRSNSTLSLTLNPPAEQRVTPNMT
QPRISPHAHATPTFMTRGRKRSANESELPPLDAVARRRRRAAEKNNEAQV
GGPFQPTSRRRAAEKNNEAQFGSPFQPTSRRHRTVDRNEQASEKLQQDAR
PVPPVAGLPSSPRGRKRTATQAGLRSAERPARRRRCAQERDVEDFHAPPI
PSAAASSSSTGSDAVDAATLESRIHDDEGVIELVDDSLIR*
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mRNA from alignment at tig00000049_pilon:169596..172140+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra899.t1 ID=Ggra899.t1|Name=Ggra899.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2545bp|location=Sequence derived from alignment at tig00000049_pilon:169596..172140+ (Gracilaria gracilis GNS1m male)
ATGAGTTCTACTACACCAGAACGCCCCTCAACACCTTCTATCCGTACGGA
GGATCTTGGAAACGCAGCCCTGCGCATCCAGCGTTCCAATTCAACGCTGT
CACTTACGCTGAATCCCCCAGCAGAACAGCGTGTGACTCCAAACATGACC
CAGCCACGCATTTCACCGCACGCCCACGCCACTCCGACCTTCATGACCCG
CGGCCGAAAACGCAGCGCGAATGAATCGGAGCTGCCTCCCTTGGATGCGG
TTGCTCGTCGTCGCCGTCGAGCCGCCGAGAAGAATAACGAAGCCCAAGTT
GGGGGCCCGTTCCAGCCCACTTCCCGCCGTCGAGCCGCCGAGAAGAATAA
CGAAGCCCAGTTTGGGAGCCCGTTCCAGCCCACTTCCCGCCGTCACCGAA
CAGTCGACCGCAATGAACAGGCGTCGGAGAAGCTTCAACAAGATGCACGG
CCCGTGCCACCAGTTGCCGGGCTGCCGTCTTCGCCGCGGGGCCGCAAACG
CACGGCTACCCAAGCTGGGCTCAGAAGCGCAGAACGGCCCGCTCGACGTC
GTCGCTGTGCACAAGAGAGGGATGTGGAAGACTTTCACGCGCCGCCCATA
CCGTCTGCTGCAGCGTCGAGCTCATCGACGGGCAGCGATGCTGTCGACGC
cgccacgctcgagtacaggcgtcggcgtgaccgccgtcgacagcagatcc
ggaaacgacgccagcgccgacgacaagccctggcgaacggagtggaagcg
gtgccccaagatgcactagccgctgcagcggacttgcgcgacgacgtgca
ctggagcgctgCATTTCCAcataccgcgcacgcgattgccacaccgacgt
cgcagaatcggcgacctgtcaccacaagcgccagtgttgctcttcacgcg
gacgctgacggtgaacgggctggtgagcaaccggaggtgcacgcgccgac
tctcttttcgccgccattcgtTCAGTCGCTGGTGATAGACGCTATGGGGA
CAGCTCACGTGTGTGAGCTAGTGCAgcgcgacgaaagggaatcgcgactt
ggcgcatcggcgctgcagcgcatctacctggcgccgcCgcgcatctacct
ggcgccgcagcgcatctacctggcgccgcaaccggtagagccgccgccgg
tggagattagattcccgctgcaccccagcttggagggagagcgggggtgg
tgggaggaggtgtcgtcgtcagcttctgttgtgagagtggaggagcaggc
gagaggcggtgcggcgagcgcctcaagccagcggcagttcgacgtgcagc
cgccgccacatagcgtcacaccgtcggtagtgtggtggtcgtattcgagc
ggcggcggtgcgccgcggcgCCATTCGCTTCAAGCAGAGCGTTCAGGAGC
GCGGAGATCGTCTTCGATTCGTTTTGATTGATTTTTTGGGCTGGTACGAC
AACACGTTTCACACACGTGCGGCGACAAGTTGTGTTCCTCTCGTTAATTG
CAAGTGCGCCAGTCACTAAGTGACAAGTCTTGTCAAGCACTCCCGTGACG
TCATCGTCAGCATGACCTCAACCGTATGGCTAACTCAACCACCACCACCA
TCTTACAGCAGCTCTAGCGTTCCCGCGGCCTGAACCACAACAGCGAGGTT
TCTTCGATGCCGGGAAGGCCGTTGTATTCGGCGTGTTGTCTCGTGCCTAG
CGTCCTCAACGTTTCGCCGACGCCGCCAAAGCTGAAACCATTGTGCTGCA
GCAAAACACCGAACGCCTACACTTATGTGGTAAGCAACAGTTCTACCGAC
GAACGCGCGCTTCATATATATCAAAGGATGGCGTTCACAGCTTCGTACCA
CTCACGCGTCGTTCCGTGAGTTTCAAACTCAATACCACACGTCCCATGTA
CCGAACACGCCGCCGAGCTTGGCGAGCCTCTCCTCGCCAAGCACAAACTG
TTCGCTGTGGTTCTGTTGAGCTGCGGCACCAGGCGCTAGCGCATTTTGGC
TCGTGTGCGTCACACTTGGGGACTGCGTGAGTGCATTGGGTAACTGGTCT
CTTACTTGTGCTTAACAACGAGAGCGAGAAGCCACGATTCACGCCAGACC
GCATGGTTGGTCGAGAACGGCGGTATCTGTTACAACCGCCAGTGTCGACA
GCAATAGGCAGCTGTGCTCCAGAATCGCAGGGCATGGGGCGTGAGTCCAT
TACACTTGTGCTCCAAATCTCTCAGTTGGGATTTTTCTCCATCCCTTTCG
GTAGGATGAGTAGCTGCATGTCACTCTTTGTGGCGCACCACACACATGCC
GCAACTGGACAGCGCCACAAAATCGCTAGAGAAACAACTCGAGGAAGGCC
CATTTGAGTAAAACTAATGCCTCCCCTATTCTTCGTAGGAGCTGCCTTGT
TTGAACTGGCCCCGGCGAGCTGCGACTTGCAAGCTGTTCGCAGCCGGGGG
GTAAAACGCCCACGAACACCTCTTATCTACACAGGTCACGGATTCACGAC
GATGAAGGCGTCATCGAGCTCGTCGATGATTCGTTGATTCGTTGA
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Coding sequence (CDS) from alignment at tig00000049_pilon:169596..172140+

>Ggra899.t1 ID=Ggra899.t1|Name=Ggra899.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=723bp|location=Sequence derived from alignment at tig00000049_pilon:169596..172140+ (Gracilaria gracilis GNS1m male)
ATGAGTTCTACTACACCAGAACGCCCCTCAACACCTTCTATCCGTACGGA
GGATCTTGGAAACGCAGCCCTGCGCATCCAGCGTTCCAATTCAACGCTGT
CACTTACGCTGAATCCCCCAGCAGAACAGCGTGTGACTCCAAACATGACC
CAGCCACGCATTTCACCGCACGCCCACGCCACTCCGACCTTCATGACCCG
CGGCCGAAAACGCAGCGCGAATGAATCGGAGCTGCCTCCCTTGGATGCGG
TTGCTCGTCGTCGCCGTCGAGCCGCCGAGAAGAATAACGAAGCCCAAGTT
GGGGGCCCGTTCCAGCCCACTTCCCGCCGTCGAGCCGCCGAGAAGAATAA
CGAAGCCCAGTTTGGGAGCCCGTTCCAGCCCACTTCCCGCCGTCACCGAA
CAGTCGACCGCAATGAACAGGCGTCGGAGAAGCTTCAACAAGATGCACGG
CCCGTGCCACCAGTTGCCGGGCTGCCGTCTTCGCCGCGGGGCCGCAAACG
CACGGCTACCCAAGCTGGGCTCAGAAGCGCAGAACGGCCCGCTCGACGTC
GTCGCTGTGCACAAGAGAGGGATGTGGAAGACTTTCACGCGCCGCCCATA
CCGTCTGCTGCAGCGTCGAGCTCATCGACGGGCAGCGATGCTGTCGACGC
cgccacgctcgaGTCACGGATTCACGACGATGAAGGCGTCATCGAGCTCG
TCGATGATTCGTTGATTCGTTGA
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