Ggra8989.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8989.t1
Unique NameGgra8989.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length250
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:1068815..1069633 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706300.1
Preferred namePSMA4
PFAMsProteasome,Proteasome_A_N
Max annot lvl2759|Eukaryota
KEGG rclassRC00005
KEGG koko:K02728,ko:K10747
KEGG ReactionR00381,R00382,R10822,R10823
KEGG Pathwayko03030,ko03050,ko03410,ko03420,ko03430,map03030,map03050,map03410,map03420,map03430
KEGG ModuleM00337,M00340
GOsGO:0000502,GO:0000932,GO:0001673,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005773,GO:0005829,GO:0005839,GO:0005840,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007088,GO:0007346,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009896,GO:0009987,GO:0010035,GO:0010038,GO:0010498,GO:0010499,GO:0010564,GO:0010638,GO:0010965,GO:0012505,GO:0016020,GO:0016043,GO:0016579,GO:0019538,GO:0019773,GO:0019941,GO:0022607,GO:0022626,GO:0030071,GO:0030163,GO:0031331,GO:0031597,GO:0031974,GO:0031981,GO:0032270,GO:0032436,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034515,GO:0034622,GO:0035770,GO:0036211,GO:0036464,GO:0042175,GO:0042221,GO:0043073,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043248,GO:0043412,GO:0043632,GO:0043687,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0046686,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051247,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0062033,GO:0065003,GO:0065007,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0071840,GO:0080129,GO:0090068,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:1990904,GO:2001252
Evalue7.88e-120
EggNOG OGsCOG0638@1|root,KOG0178@2759|Eukaryota
EC3.4.25.1,6.5.1.1,6.5.1.6,6.5.1.7
Descriptionthreonine-type endopeptidase activity
COG categoryO
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03032,ko03051,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8989Ggra8989Gracilaria gracilis GNS1m malegenetig00000860_pilon 1068815..1069633 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8989.t1Ggra8989.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 1068815..1069633 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8989.t1.start1Ggra8989.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 1068815..1068817 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8989.t1.CDS1Ggra8989.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 1068815..1068843 +
Ggra8989.t1.CDS2Ggra8989.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000860_pilon 1068913..1069633 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8989.t1.exon1Ggra8989.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 1068815..1068843 +
Ggra8989.t1.exon2Ggra8989.t1.exon2Gracilaria gracilis GNS1m maleexontig00000860_pilon 1068913..1069633 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8989.t1.intron1Ggra8989.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000860_pilon 1068844..1068912 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8989.t1.stop1Ggra8989.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 1069631..1069633 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8989.t1 ID=Ggra8989.t1|Name=Ggra8989.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=250bp
MARRYDSRTTTFSPEGRLFQVEYAMEAIGNAGAAVGVLSTEGVVLAAEKK
TASKLLDTMKRSEKMYKIDSHIMCAVAGITADANILINQARLAAQRYAFS
YQEPIPVEHLLQQICDTKQTYTQFGGLRPFGVSFLFAGWDVHYGFQLYQS
DPSGNYGGWKATSIGANSNAASSILKSDYKDEMKLKDALALAIKVLTKTM
DSATLSPEKLEISTVCLKDGSVVHHQLTNKELESLLNTAGVLASDKPDA*
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spliced messenger RNA

>Ggra8989.t1 ID=Ggra8989.t1|Name=Ggra8989.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=750bp|location=Sequence derived from alignment at tig00000860_pilon:1068815..1069633+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCGGCGATATGATTCACGAACAACAACGTTTTCCCCAGAAGGGCG
TCTTTTCCAAGTCGAATATGCGATGGAAGCTATTGGAAACGCTGGCGCCG
CGGTTGGTGTCCTCTCCACTGAGGGGGTTGTACTTGCGGCTGAAAAGAAA
ACTGCGTCCAAGCTTCTGGATACCATGAAGCGATCGGAGAAAATGTACAA
GATCGATTCTCATATAATGTGTGCAGTGGCCGGAATAACAGCCGACGCCA
ACATTCTTATTAATCAAGCTCGGCTCGCTGCTCAACGATATGCGTTTTCG
TACCAAGAACCGATCCCGGTTGAGCATCTATTGCAGCAGATTTGCGATAC
CAAACAAACGTATACCCAGTTTGGAGGTTTGCGACCCTTTGGAGTTAGCT
TCTTGTTTGCTGGATGGGATGTTCACTACGGTTTCCAACTTTACCAAAGC
GATCCTAGTGGTAACTACGGTGGCTGGAAGGCCACAAGTATTGGAGCAAA
CTCAAACGCCGCGAGCAGCATTTTGAAGAGCGATTACAAGGACGAAATGA
AGCTGAAGGATGCTTTGGCTCTGGCGATTAAGGTTCTTACGAAAACCATG
GACAGTGCCACTTTGTCGCCAGAGAAGCTTGAGATCTCGACGGTGTGCCT
TAAGGATGGCAGTGTGGTTCATCACCAATTAACAAACAAGGAACTTGAGT
CATTGCTTAACACTGCTGGTGTTCTTGCATCTGACAAGCCTGACGCGTAA
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protein sequence of Ggra8989.t1

>Ggra8989.t1 ID=Ggra8989.t1|Name=Ggra8989.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=250bp
MARRYDSRTTTFSPEGRLFQVEYAMEAIGNAGAAVGVLSTEGVVLAAEKK
TASKLLDTMKRSEKMYKIDSHIMCAVAGITADANILINQARLAAQRYAFS
YQEPIPVEHLLQQICDTKQTYTQFGGLRPFGVSFLFAGWDVHYGFQLYQS
DPSGNYGGWKATSIGANSNAASSILKSDYKDEMKLKDALALAIKVLTKTM
DSATLSPEKLEISTVCLKDGSVVHHQLTNKELESLLNTAGVLASDKPDA*
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mRNA from alignment at tig00000860_pilon:1068815..1069633+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8989.t1 ID=Ggra8989.t1|Name=Ggra8989.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=819bp|location=Sequence derived from alignment at tig00000860_pilon:1068815..1069633+ (Gracilaria gracilis GNS1m male)
ATGGCTCGGCGATATGATTCACGAACAACGTAAGCTATCACACAAAGTCG
TCTGATTATATTGCACGAAAGTGTTATTCATGCTAACAAATCCCACAGAA
CGTTTTCCCCAGAAGGGCGTCTTTTCCAAGTCGAATATGCGATGGAAGCT
ATTGGAAACGCTGGCGCCGCGGTTGGTGTCCTCTCCACTGAGGGGGTTGT
ACTTGCGGCTGAAAAGAAAACTGCGTCCAAGCTTCTGGATACCATGAAGC
GATCGGAGAAAATGTACAAGATCGATTCTCATATAATGTGTGCAGTGGCC
GGAATAACAGCCGACGCCAACATTCTTATTAATCAAGCTCGGCTCGCTGC
TCAACGATATGCGTTTTCGTACCAAGAACCGATCCCGGTTGAGCATCTAT
TGCAGCAGATTTGCGATACCAAACAAACGTATACCCAGTTTGGAGGTTTG
CGACCCTTTGGAGTTAGCTTCTTGTTTGCTGGATGGGATGTTCACTACGG
TTTCCAACTTTACCAAAGCGATCCTAGTGGTAACTACGGTGGCTGGAAGG
CCACAAGTATTGGAGCAAACTCAAACGCCGCGAGCAGCATTTTGAAGAGC
GATTACAAGGACGAAATGAAGCTGAAGGATGCTTTGGCTCTGGCGATTAA
GGTTCTTACGAAAACCATGGACAGTGCCACTTTGTCGCCAGAGAAGCTTG
AGATCTCGACGGTGTGCCTTAAGGATGGCAGTGTGGTTCATCACCAATTA
ACAAACAAGGAACTTGAGTCATTGCTTAACACTGCTGGTGTTCTTGCATC
TGACAAGCCTGACGCGTAA
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Coding sequence (CDS) from alignment at tig00000860_pilon:1068815..1069633+

>Ggra8989.t1 ID=Ggra8989.t1|Name=Ggra8989.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=750bp|location=Sequence derived from alignment at tig00000860_pilon:1068815..1069633+ (Gracilaria gracilis GNS1m male)
ATGGCTCGGCGATATGATTCACGAACAACAACGTTTTCCCCAGAAGGGCG
TCTTTTCCAAGTCGAATATGCGATGGAAGCTATTGGAAACGCTGGCGCCG
CGGTTGGTGTCCTCTCCACTGAGGGGGTTGTACTTGCGGCTGAAAAGAAA
ACTGCGTCCAAGCTTCTGGATACCATGAAGCGATCGGAGAAAATGTACAA
GATCGATTCTCATATAATGTGTGCAGTGGCCGGAATAACAGCCGACGCCA
ACATTCTTATTAATCAAGCTCGGCTCGCTGCTCAACGATATGCGTTTTCG
TACCAAGAACCGATCCCGGTTGAGCATCTATTGCAGCAGATTTGCGATAC
CAAACAAACGTATACCCAGTTTGGAGGTTTGCGACCCTTTGGAGTTAGCT
TCTTGTTTGCTGGATGGGATGTTCACTACGGTTTCCAACTTTACCAAAGC
GATCCTAGTGGTAACTACGGTGGCTGGAAGGCCACAAGTATTGGAGCAAA
CTCAAACGCCGCGAGCAGCATTTTGAAGAGCGATTACAAGGACGAAATGA
AGCTGAAGGATGCTTTGGCTCTGGCGATTAAGGTTCTTACGAAAACCATG
GACAGTGCCACTTTGTCGCCAGAGAAGCTTGAGATCTCGACGGTGTGCCT
TAAGGATGGCAGTGTGGTTCATCACCAATTAACAAACAAGGAACTTGAGT
CATTGCTTAACACTGCTGGTGTTCTTGCATCTGACAAGCCTGACGCGTAA
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