Ggra8986.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8986.t1
Unique Name	Ggra8986.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	623

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000860_pilon	contig	tig00000860_pilon:1059950..1061818 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	15368.BRADI1G29760.1
PFAMs	Glyco_transf_92
Max annot lvl	35493\|Streptophyta
Evalue	2.38e-15
EggNOG OGs	COG0463@1\|root,2QTF9@2759\|Eukaryota,37N9S@33090\|Viridiplantae,3GBHN@35493\|Streptophyta,3KVVU@4447\|Liliopsida,3I4Q3@38820\|Poales
Description	Glycosyltransferase family 92
COG category	M

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8986	Ggra8986	Gracilaria gracilis GNS1m male	gene	tig00000860_pilon 1059950..1061818 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8986.t1.stop1	Ggra8986.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000860_pilon 1059950..1059952 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8986.t1.CDS1	Ggra8986.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000860_pilon 1059950..1061818 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8986.t1.exon1	Ggra8986.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000860_pilon 1059950..1061818 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8986.t1.start1	Ggra8986.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000860_pilon 1061816..1061818 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8986.t1	Ggra8986.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000860_pilon 1059950..1061818 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000860_pilon:1059950..1061818-
coding sequence from alignment at tig00000860_pilon:1059950..1061818-

mRNA sequence

>Ggra8986.t1 ID=Ggra8986.t1|Name=Ggra8986.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=623bp
MSSNKCPDPHLLAPVAHPLLHGKCSDPDLLTPVAHPLVHAFKHLSAAFIV
RFRVAVNSTSVARIVLLVAAFILAAAVLLPPLLFQEELLIHKNWLHTYKR
LAVQALSSKPRSLLSSFTSNSSTEQWTLPPHIQTTYKVHRHSPQVKQVTR
THWTRPYVFLHYARPFPHNRSHTELFIYATGVSMGVFDRGFVVQGCLVGA
DVYRSETYKGDVFSCTVPRQISKGEFISLVLPRNGYVDEQLQNTVQIHDT
INVTLHQGDLIPLSNDTRIHFDHSNLHGNSVQPLLYVNSHQKFEQLGDDR
DPEAADSEPRYEVCLATQIKPFTNYLHDWIAYYKRIGVDMVYIIDNDAEQ
DLSQVYKHRGDVQVLYWPWRRSQTQALSYMLVAARPRCEWILMADVDEFA
MLGIGKHQQLAHKQVLRAYLRRHLNSTYKQFMFSFLIMGNSGHVKTPDGP
MPEVYIHKFGRQNENGKSVAYTDHWWKNSGIHRFGGRPALQAPVKRNSSN
LFEPVEEDDQPIMVHYHHRAFEDHILKEKYGSASTTDGKGDPVTTISMPK
AAPKWMTDVDESLEYTYFRSIYRSIMRKPFKFEQTLAKRSMGRRCVAKRK
SFGKQRKLIVEDERCDAPSNET*

spliced messenger RNA

>Ggra8986.t1 ID=Ggra8986.t1|Name=Ggra8986.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1869bp|location=Sequence derived from alignment at tig00000860_pilon:1059950..1061818- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTCAAACAAATGCCCCGACCCTCATCTGCTCGCTCCGGTCGCCCA
TCCACTTCTCCACGGCAAATGCTCCGACCCTGATCTGCTCACTCCGGTCG
CCCATCCACTTGTCCACGCTTTCAAACACCTTTCTGCTGCGTTCATTGTG
CGCTTTCGCGTCGCGGTGAACAGCACGTCTGTCGCTCGTATTGTGCTGCT
TGTCGCTGCTTTCATATTGGCCGCCGCCGTTCTGCTGCCTCCCCTGCTGT
TTCAAGAAGAGCTTTTGATTCATAAAAACTGGCTACATACGTACAAACGG
CTTGCTGTTCAGGCTCTCTCCTCCAAGCCGCGCTCACTACTCTCCTCATT
CACGTCCAACAGCAGCACTGAACAATGGACACTGCCACCACACATTCAAA
CTACGTACAAAGTACACCGTCACTCACCCCAAGTCAAACAGGTTACCCGA
ACGCATTGGACTCGTCCTTATGTGTTTTTGCACTATGCTAGACCATTCCC
GCACAATCGCTCGCATACAGAACTGTTCATCTATGCCACTGGAGTCAGCA
TGGGCGTCTTTGACCGTGGTTTCGTGGTGCAAGGCTGTCTAGTAGGTGCT
GATGTGTATCGATCCGAAACGTATAAAGGAGATGTGTTTTCTTGTACTGT
TCCCCGTCAGATTAGCAAAGGCGAGTTCATATCTCTCGTTTTGCCTCGCA
ATGGCTATGTTGATGAACAGTTGCAAAACACCGTTCAAATACATGATACC
ATTAATGTCACGCTTCATCAAGGTGATCTCATACCACTATCGAACGACAC
TCGTATTCATTTTGACCATTCTAACTTGCACGGAAATAGTGTTCAGCCGT
TGTTGTACGTCAACTCGCATCAGAAATTTGAACAACTTGGCGACGACAGA
GATCCTGAGGCAGCTGATTCTGAACCACGGTATGAAGTGTGTCTTGCCAC
ACAGATCAAGCCGTTTACCAACTATCTGCATGATTGGATCGCATATTACA
AACGTATCGGGGTGGACATGGTGTACATTATCGATAACGACGCGGAACAA
GATCTGTCCCAAGTCTACAAACACCGTGGCGACGTTCAGGTTCTGTACTG
GCCTTGGCGCCGTTCTCAAACACAGGCCTTGAGCTATATGCTAGTAGCAG
CACGGCCTCGATGTGAATGGATTTTGATGGCCGATGTGGATGAATTTGCC
ATGCTTGGTATTGGAAAACATCAGCAGCTTGCGCACAAACAAGTCTTGAG
AGCATACTTGAGACGGCATTTGAACAGCACGTATAAGCAATTCATGTTTT
CGTTTTTGATCATGGGAAATTCTGGACATGTGAAAACTCCGGACGGTCCG
ATGCCAGAAGTGTACATTCACAAGTTTGGAAGACAAAACGAGAATGGAAA
GTCTGTTGCGTACACAGATCATTGGTGGAAGAATTCTGGCATACATCGCT
TCGGGGGAAGGCCTGCTTTACAAGCTCCAGTGAAACGTAACTCTTCCAAT
TTATTCGAGCCCGTTGAAGAAGATGATCAACCGATCATGGTACACTATCA
TCATCGTGCTTTTGAGGATCACATATTGAAGGAAAAGTATGGGTCAGCAT
CTACGACGGATGGAAAGGGGGATCCTGTCACGACTATTTCGATGCCTAAG
GCTGCACCCAAGTGGATGACAGACGTTGATGAGAGTTTAGAATATACCTA
CTTTCGTAGTATATATCGGTCCATTATGCGGAAGCCTTTTAAGTTCGAAC
AAACTCTTGCCAAAAGGTCTATGGGACGAAGATGTGTGGCTAAGAGAAAA
AGTTTTGGCAAACAACGAAAGCTAATTGTTGAGGATGAGCGATGTGACGC
TCCATCAAACGAAACGTAG

protein sequence of Ggra8986.t1

>Ggra8986.t1 ID=Ggra8986.t1|Name=Ggra8986.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=623bp
MSSNKCPDPHLLAPVAHPLLHGKCSDPDLLTPVAHPLVHAFKHLSAAFIV
RFRVAVNSTSVARIVLLVAAFILAAAVLLPPLLFQEELLIHKNWLHTYKR
LAVQALSSKPRSLLSSFTSNSSTEQWTLPPHIQTTYKVHRHSPQVKQVTR
THWTRPYVFLHYARPFPHNRSHTELFIYATGVSMGVFDRGFVVQGCLVGA
DVYRSETYKGDVFSCTVPRQISKGEFISLVLPRNGYVDEQLQNTVQIHDT
INVTLHQGDLIPLSNDTRIHFDHSNLHGNSVQPLLYVNSHQKFEQLGDDR
DPEAADSEPRYEVCLATQIKPFTNYLHDWIAYYKRIGVDMVYIIDNDAEQ
DLSQVYKHRGDVQVLYWPWRRSQTQALSYMLVAARPRCEWILMADVDEFA
MLGIGKHQQLAHKQVLRAYLRRHLNSTYKQFMFSFLIMGNSGHVKTPDGP
MPEVYIHKFGRQNENGKSVAYTDHWWKNSGIHRFGGRPALQAPVKRNSSN
LFEPVEEDDQPIMVHYHHRAFEDHILKEKYGSASTTDGKGDPVTTISMPK
AAPKWMTDVDESLEYTYFRSIYRSIMRKPFKFEQTLAKRSMGRRCVAKRK
SFGKQRKLIVEDERCDAPSNET*

mRNA from alignment at tig00000860_pilon:1059950..1061818-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8986.t1 ID=Ggra8986.t1|Name=Ggra8986.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1869bp|location=Sequence derived from alignment at tig00000860_pilon:1059950..1061818- (Gracilaria gracilis GNS1m male)
ATGTCGTCAAACAAATGCCCCGACCCTCATCTGCTCGCTCCGGTCGCCCA
TCCACTTCTCCACGGCAAATGCTCCGACCCTGATCTGCTCACTCCGGTCG
CCCATCCACTTGTCCACGCTTTCAAACACCTTTCTGCTGCGTTCATTGTG
CGCTTTCGCGTCGCGGTGAACAGCACGTCTGTCGCTCGTATTGTGCTGCT
TGTCGCTGCTTTCATATTGGCCGCCGCCGTTCTGCTGCCTCCCCTGCTGT
TTCAAGAAGAGCTTTTGATTCATAAAAACTGGCTACATACGTACAAACGG
CTTGCTGTTCAGGCTCTCTCCTCCAAGCCGCGCTCACTACTCTCCTCATT
CACGTCCAACAGCAGCACTGAACAATGGACACTGCCACCACACATTCAAA
CTACGTACAAAGTACACCGTCACTCACCCCAAGTCAAACAGGTTACCCGA
ACGCATTGGACTCGTCCTTATGTGTTTTTGCACTATGCTAGACCATTCCC
GCACAATCGCTCGCATACAGAACTGTTCATCTATGCCACTGGAGTCAGCA
TGGGCGTCTTTGACCGTGGTTTCGTGGTGCAAGGCTGTCTAGTAGGTGCT
GATGTGTATCGATCCGAAACGTATAAAGGAGATGTGTTTTCTTGTACTGT
TCCCCGTCAGATTAGCAAAGGCGAGTTCATATCTCTCGTTTTGCCTCGCA
ATGGCTATGTTGATGAACAGTTGCAAAACACCGTTCAAATACATGATACC
ATTAATGTCACGCTTCATCAAGGTGATCTCATACCACTATCGAACGACAC
TCGTATTCATTTTGACCATTCTAACTTGCACGGAAATAGTGTTCAGCCGT
TGTTGTACGTCAACTCGCATCAGAAATTTGAACAACTTGGCGACGACAGA
GATCCTGAGGCAGCTGATTCTGAACCACGGTATGAAGTGTGTCTTGCCAC
ACAGATCAAGCCGTTTACCAACTATCTGCATGATTGGATCGCATATTACA
AACGTATCGGGGTGGACATGGTGTACATTATCGATAACGACGCGGAACAA
GATCTGTCCCAAGTCTACAAACACCGTGGCGACGTTCAGGTTCTGTACTG
GCCTTGGCGCCGTTCTCAAACACAGGCCTTGAGCTATATGCTAGTAGCAG
CACGGCCTCGATGTGAATGGATTTTGATGGCCGATGTGGATGAATTTGCC
ATGCTTGGTATTGGAAAACATCAGCAGCTTGCGCACAAACAAGTCTTGAG
AGCATACTTGAGACGGCATTTGAACAGCACGTATAAGCAATTCATGTTTT
CGTTTTTGATCATGGGAAATTCTGGACATGTGAAAACTCCGGACGGTCCG
ATGCCAGAAGTGTACATTCACAAGTTTGGAAGACAAAACGAGAATGGAAA
GTCTGTTGCGTACACAGATCATTGGTGGAAGAATTCTGGCATACATCGCT
TCGGGGGAAGGCCTGCTTTACAAGCTCCAGTGAAACGTAACTCTTCCAAT
TTATTCGAGCCCGTTGAAGAAGATGATCAACCGATCATGGTACACTATCA
TCATCGTGCTTTTGAGGATCACATATTGAAGGAAAAGTATGGGTCAGCAT
CTACGACGGATGGAAAGGGGGATCCTGTCACGACTATTTCGATGCCTAAG
GCTGCACCCAAGTGGATGACAGACGTTGATGAGAGTTTAGAATATACCTA
CTTTCGTAGTATATATCGGTCCATTATGCGGAAGCCTTTTAAGTTCGAAC
AAACTCTTGCCAAAAGGTCTATGGGACGAAGATGTGTGGCTAAGAGAAAA
AGTTTTGGCAAACAACGAAAGCTAATTGTTGAGGATGAGCGATGTGACGC
TCCATCAAACGAAACGTAG

Coding sequence (CDS) from alignment at tig00000860_pilon:1059950..1061818-

>Ggra8986.t1 ID=Ggra8986.t1|Name=Ggra8986.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1869bp|location=Sequence derived from alignment at tig00000860_pilon:1059950..1061818- (Gracilaria gracilis GNS1m male)
ATGTCGTCAAACAAATGCCCCGACCCTCATCTGCTCGCTCCGGTCGCCCA
TCCACTTCTCCACGGCAAATGCTCCGACCCTGATCTGCTCACTCCGGTCG
CCCATCCACTTGTCCACGCTTTCAAACACCTTTCTGCTGCGTTCATTGTG
CGCTTTCGCGTCGCGGTGAACAGCACGTCTGTCGCTCGTATTGTGCTGCT
TGTCGCTGCTTTCATATTGGCCGCCGCCGTTCTGCTGCCTCCCCTGCTGT
TTCAAGAAGAGCTTTTGATTCATAAAAACTGGCTACATACGTACAAACGG
CTTGCTGTTCAGGCTCTCTCCTCCAAGCCGCGCTCACTACTCTCCTCATT
CACGTCCAACAGCAGCACTGAACAATGGACACTGCCACCACACATTCAAA
CTACGTACAAAGTACACCGTCACTCACCCCAAGTCAAACAGGTTACCCGA
ACGCATTGGACTCGTCCTTATGTGTTTTTGCACTATGCTAGACCATTCCC
GCACAATCGCTCGCATACAGAACTGTTCATCTATGCCACTGGAGTCAGCA
TGGGCGTCTTTGACCGTGGTTTCGTGGTGCAAGGCTGTCTAGTAGGTGCT
GATGTGTATCGATCCGAAACGTATAAAGGAGATGTGTTTTCTTGTACTGT
TCCCCGTCAGATTAGCAAAGGCGAGTTCATATCTCTCGTTTTGCCTCGCA
ATGGCTATGTTGATGAACAGTTGCAAAACACCGTTCAAATACATGATACC
ATTAATGTCACGCTTCATCAAGGTGATCTCATACCACTATCGAACGACAC
TCGTATTCATTTTGACCATTCTAACTTGCACGGAAATAGTGTTCAGCCGT
TGTTGTACGTCAACTCGCATCAGAAATTTGAACAACTTGGCGACGACAGA
GATCCTGAGGCAGCTGATTCTGAACCACGGTATGAAGTGTGTCTTGCCAC
ACAGATCAAGCCGTTTACCAACTATCTGCATGATTGGATCGCATATTACA
AACGTATCGGGGTGGACATGGTGTACATTATCGATAACGACGCGGAACAA
GATCTGTCCCAAGTCTACAAACACCGTGGCGACGTTCAGGTTCTGTACTG
GCCTTGGCGCCGTTCTCAAACACAGGCCTTGAGCTATATGCTAGTAGCAG
CACGGCCTCGATGTGAATGGATTTTGATGGCCGATGTGGATGAATTTGCC
ATGCTTGGTATTGGAAAACATCAGCAGCTTGCGCACAAACAAGTCTTGAG
AGCATACTTGAGACGGCATTTGAACAGCACGTATAAGCAATTCATGTTTT
CGTTTTTGATCATGGGAAATTCTGGACATGTGAAAACTCCGGACGGTCCG
ATGCCAGAAGTGTACATTCACAAGTTTGGAAGACAAAACGAGAATGGAAA
GTCTGTTGCGTACACAGATCATTGGTGGAAGAATTCTGGCATACATCGCT
TCGGGGGAAGGCCTGCTTTACAAGCTCCAGTGAAACGTAACTCTTCCAAT
TTATTCGAGCCCGTTGAAGAAGATGATCAACCGATCATGGTACACTATCA
TCATCGTGCTTTTGAGGATCACATATTGAAGGAAAAGTATGGGTCAGCAT
CTACGACGGATGGAAAGGGGGATCCTGTCACGACTATTTCGATGCCTAAG
GCTGCACCCAAGTGGATGACAGACGTTGATGAGAGTTTAGAATATACCTA
CTTTCGTAGTATATATCGGTCCATTATGCGGAAGCCTTTTAAGTTCGAAC
AAACTCTTGCCAAAAGGTCTATGGGACGAAGATGTGTGGCTAAGAGAAAA
AGTTTTGGCAAACAACGAAAGCTAATTGTTGAGGATGAGCGATGTGACGC
TCCATCAAACGAAACGTAG