Ggra8981.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8981.t1
Unique Name	Ggra8981.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	770

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000860_pilon	contig	tig00000860_pilon:1044131..1046440 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8981	Ggra8981	Gracilaria gracilis GNS1m male	gene	tig00000860_pilon 1044131..1046440 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8981.t1.start1	Ggra8981.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000860_pilon 1044131..1044133 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8981.t1.CDS1	Ggra8981.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000860_pilon 1044131..1046440 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8981.t1.exon1	Ggra8981.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000860_pilon 1044131..1046440 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8981.t1.stop1	Ggra8981.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000860_pilon 1046438..1046440 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8981.t1	Ggra8981.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000860_pilon 1044131..1046440 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000860_pilon:1044131..1046440+
coding sequence from alignment at tig00000860_pilon:1044131..1046440+

mRNA sequence

>Ggra8981.t1 ID=Ggra8981.t1|Name=Ggra8981.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=770bp
MSTPTVTNPSADADADAAAAAAASSPSSVDPASAAASPVVAKRKNSSPDH
KRVTIWNRAQGRKIAGNAAPLQKNLDDYLRKHPHCERYNGQDRATRYTQH
RRILPVGANVGQVRPQPQVVLPVQTVLPLPVSSFSSSNALHLPVQLVSYP
VPLDAANLHLYNAQQRPSYLVPQYSLPPDLQQPQHSQQPQPNQQPQPSPA
PHPHQPPPQPSAHHQPLPPSSISASPHQAPVANKHSPVAASHPLNAHAAL
HKHKSVQQPPLFPHHTFPLINEHAALDSKLARQAAESTVANALAKANAQM
RGHVKAEPNSSFPTNQTAVHPHSAASSSVPTSATTAAAAAAAAAAAAAAA
AAAAGPRNGEDKSPVQLSPAQFFRDMKVMMQKKAEQSSRAQHVLPNQAKK
NSSSIPSLQEMPVVSNPMQQVPTQQMVRPAQRIAHSVAQCSDQAPLAASQ
PYGTSQTPSLTSFDVDAATFQLAGTRIDETESTQSPSSNNQTSSALDVSL
VPSPSQELMPSNMTLSESVSQGLDLHATNLSPDAVKDIMRHRADHVDKVL
NSGTSVGLSNPCNISATTTNQMFDASRFNNGKNSASVSRSLSFLLKNAPF
ASRENSMDFRKGEFVGKRDVSMDMIRRDISMDLLSSRRIGSQERIDGDLV
RDMSIDFFGSSLRNANPDFSMEMQFPNDSNGVQGGAVFELGALTDDVVFG
QPFHNLNTPSKTEANATADGRDGRFSRSKIGMSQDDLMVHVLANQGAHQQ
YRRNVNGSIEDLRELKMPF*

spliced messenger RNA

>Ggra8981.t1 ID=Ggra8981.t1|Name=Ggra8981.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2310bp|location=Sequence derived from alignment at tig00000860_pilon:1044131..1046440+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCACCCCGACCGTAACAAACCCTTccgccgacgccgacgccgacgc
cgccgccgccgccgccgcGTCTTCGCCGTCTTCCGTCGACCCCGCTTCCG
CCGCCGCGTCGCCCGTCGTCGCCAAGCGTAAGAATTCGTCGCCCGATCAC
AAGCGCGTCACCATATGGAACCGCGCGCAGGGCCGCAAAATCGCCGGCAA
TGCCGCCCCATTGCAGAAGAACCTCGACGATTACCTGCGTAAACACCCGC
ATTGCGAGCGCTACAACGGACAGGATCGTGCCACTCGCTACACGCAACAT
CGACGTATCTTGCCGGTTGGTGCTAACGTCGGACAGGTTAGACCGCAGCC
GCAGGTCGTCTTGCCCGTGCAAACCGTTCTTCCCTTGCCCGTTTCATCCT
TCTCGTCTTCCAACGCCCTGCATTTGCCTGTGCAGCTAGTTTCGTATCCT
GTGCCGTTGGATGCCGCAAACCTGCACCTTTACAACGCGCAACAACGCCC
GTCCTACTTGGTGCCACAGTATTCATTACCCCCGGATCTTCAACAGCCGC
AACATAGTCAAcaaccacaaccaaaccaacaaccgcaaccgtcccccgcc
ccgcacccgcaccaaccgccaccgcaaccCTCTGCACACCATCAACCTCT
CCCGCCCTCGTCCATCTCCGCGTCGCCGCACCAAGCGCCCGTCGCCAACA
AGCACTCGCCCGTCGCCGCGTCGCACCCGCTCAACGCCCATGCCGCGCTT
CACAAGCACAAGTCCGTGCAACAACCGCCGCTCTTCCCGCATCATACTTT
CCCGCTCATTAATGAGCATGCCGCACTTGATTCCAAGCTCGCGCGACAGG
CCGCCGAGTCCACTGTCGCCAACGCGCTCGCGAAGGCCAACGCCCAGATG
AGGGGTCATGTCAAGGCCGAACCCAACTCCTCTTTTCCCACGAATCAAAC
TGCTGTTCACCCGCActctgccgcttcctcttctgtcccgacttccgcta
ctactgccgctgctgccgccgccgctgcagctgccgccgctgccgccgcc
gctgcggcggccGGCCCGAGAAACGGCGAGGATAAGAGCCCGGTGCAACT
TTCGCCCGCGCAGTTTTTTAGAGATATGAAGGTCATGATGCAGAAGAAGG
CGGAGCAATCGTCGCGCGCTCAGCATGTGCTGCCGAATCAGGCGAAGAAG
AACTCGTCGTCGATACCGTCTTTGCAAGAAATGCCGGTGGTGTCCAATCC
AATGCAGCAAGTTCCCACGCAGCAGATGGTGCGTCCGGCTCAGCGAATTG
CGCACTCTGTGGCACAGTGCTCGGATCAGGCGCCGTTGGCTGCGTCGCAA
CCTTACGGCACCTCGCAAACGCCCTCGCTTACTTCGTTTGACGTTGATGC
TGCTACTTTTCAGCTGGCGGGTACTAGGATTGATGAGACAGAGTCTACGC
AAAGCCCGAGTAGTAATAATCAGACTTCGTCAGCGCTTGACGTTTCGCTG
GTTCCTTCACCGTCGCAGGAGCTTATGCCGTCGAATATGACGCTGTCTGA
GTCGGTTTCACAAGGGCTTGATTTGCATGCGACAAACCTTTCGCCCGATG
CCGTGAAAGACATCATGAGACATCGTGCCGATCATGTTGACAAGGTACTC
AACAGCGGCACGTCAGTTGGGCTTTCCAACCCTTGTAATATATCAGCTAC
GACTACGAACCAGATGTTCGATGCTTCGCGATTTAACAATGGCAAGAATT
CGGCGTCGGTCAGTCGTTCGCTTAGTTTTCTACTCAAGAATGCACCGTTT
GCTTCGAGAGAGAATTCTATGGATTTCAGAAAAGGCGAGTTTGTTGGTAA
ACGGGATGTGTCGATGGATATGATTCGAAGAGATATTTCGATGGATTTAC
TTTCTTCTAGGAGAATCGGCTCGCAGGAGCGAATTGATGGCGATCTTGTA
CGTGATATGAGTATCGACTTTTTTGGAAGCTCGCTGCGAAACGCCAACCC
CGATTTCAGCATGGAGATGCAGTTCCCCAATGACTCCAACGGAGTGCAGG
GTGGTGCTGTGTTCGAGCTAGGAGCCCTCACCGATGACGTTGTTTTTGGT
CAACCGTTCCATAACCTTAATACTCCATCCAAGACAGAGGCCAACGCTAC
TGCTGACGGGCGGGACGGGAGGTTCTCCAGGTCCAAGATCGGCATGTCAC
AAGACGATCTTATGGTGCATGTGTTGGCAAATCAAGGTGCCCATCAGCAA
TACCGACGCAATGTGAATGGGAGTATAGAAGATCTCCGTGAGCTCAAAAT
GCCGTTCTAG

protein sequence of Ggra8981.t1

>Ggra8981.t1 ID=Ggra8981.t1|Name=Ggra8981.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=770bp
MSTPTVTNPSADADADAAAAAAASSPSSVDPASAAASPVVAKRKNSSPDH
KRVTIWNRAQGRKIAGNAAPLQKNLDDYLRKHPHCERYNGQDRATRYTQH
RRILPVGANVGQVRPQPQVVLPVQTVLPLPVSSFSSSNALHLPVQLVSYP
VPLDAANLHLYNAQQRPSYLVPQYSLPPDLQQPQHSQQPQPNQQPQPSPA
PHPHQPPPQPSAHHQPLPPSSISASPHQAPVANKHSPVAASHPLNAHAAL
HKHKSVQQPPLFPHHTFPLINEHAALDSKLARQAAESTVANALAKANAQM
RGHVKAEPNSSFPTNQTAVHPHSAASSSVPTSATTAAAAAAAAAAAAAAA
AAAAGPRNGEDKSPVQLSPAQFFRDMKVMMQKKAEQSSRAQHVLPNQAKK
NSSSIPSLQEMPVVSNPMQQVPTQQMVRPAQRIAHSVAQCSDQAPLAASQ
PYGTSQTPSLTSFDVDAATFQLAGTRIDETESTQSPSSNNQTSSALDVSL
VPSPSQELMPSNMTLSESVSQGLDLHATNLSPDAVKDIMRHRADHVDKVL
NSGTSVGLSNPCNISATTTNQMFDASRFNNGKNSASVSRSLSFLLKNAPF
ASRENSMDFRKGEFVGKRDVSMDMIRRDISMDLLSSRRIGSQERIDGDLV
RDMSIDFFGSSLRNANPDFSMEMQFPNDSNGVQGGAVFELGALTDDVVFG
QPFHNLNTPSKTEANATADGRDGRFSRSKIGMSQDDLMVHVLANQGAHQQ
YRRNVNGSIEDLRELKMPF*

mRNA from alignment at tig00000860_pilon:1044131..1046440+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8981.t1 ID=Ggra8981.t1|Name=Ggra8981.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2310bp|location=Sequence derived from alignment at tig00000860_pilon:1044131..1046440+ (Gracilaria gracilis GNS1m male)
ATGTCCACCCCGACCGTAACAAACCCTTccgccgacgccgacgccgacgc
cgccgccgccgccgccgcGTCTTCGCCGTCTTCCGTCGACCCCGCTTCCG
CCGCCGCGTCGCCCGTCGTCGCCAAGCGTAAGAATTCGTCGCCCGATCAC
AAGCGCGTCACCATATGGAACCGCGCGCAGGGCCGCAAAATCGCCGGCAA
TGCCGCCCCATTGCAGAAGAACCTCGACGATTACCTGCGTAAACACCCGC
ATTGCGAGCGCTACAACGGACAGGATCGTGCCACTCGCTACACGCAACAT
CGACGTATCTTGCCGGTTGGTGCTAACGTCGGACAGGTTAGACCGCAGCC
GCAGGTCGTCTTGCCCGTGCAAACCGTTCTTCCCTTGCCCGTTTCATCCT
TCTCGTCTTCCAACGCCCTGCATTTGCCTGTGCAGCTAGTTTCGTATCCT
GTGCCGTTGGATGCCGCAAACCTGCACCTTTACAACGCGCAACAACGCCC
GTCCTACTTGGTGCCACAGTATTCATTACCCCCGGATCTTCAACAGCCGC
AACATAGTCAAcaaccacaaccaaaccaacaaccgcaaccgtcccccgcc
ccgcacccgcaccaaccgccaccgcaaccCTCTGCACACCATCAACCTCT
CCCGCCCTCGTCCATCTCCGCGTCGCCGCACCAAGCGCCCGTCGCCAACA
AGCACTCGCCCGTCGCCGCGTCGCACCCGCTCAACGCCCATGCCGCGCTT
CACAAGCACAAGTCCGTGCAACAACCGCCGCTCTTCCCGCATCATACTTT
CCCGCTCATTAATGAGCATGCCGCACTTGATTCCAAGCTCGCGCGACAGG
CCGCCGAGTCCACTGTCGCCAACGCGCTCGCGAAGGCCAACGCCCAGATG
AGGGGTCATGTCAAGGCCGAACCCAACTCCTCTTTTCCCACGAATCAAAC
TGCTGTTCACCCGCActctgccgcttcctcttctgtcccgacttccgcta
ctactgccgctgctgccgccgccgctgcagctgccgccgctgccgccgcc
gctgcggcggccGGCCCGAGAAACGGCGAGGATAAGAGCCCGGTGCAACT
TTCGCCCGCGCAGTTTTTTAGAGATATGAAGGTCATGATGCAGAAGAAGG
CGGAGCAATCGTCGCGCGCTCAGCATGTGCTGCCGAATCAGGCGAAGAAG
AACTCGTCGTCGATACCGTCTTTGCAAGAAATGCCGGTGGTGTCCAATCC
AATGCAGCAAGTTCCCACGCAGCAGATGGTGCGTCCGGCTCAGCGAATTG
CGCACTCTGTGGCACAGTGCTCGGATCAGGCGCCGTTGGCTGCGTCGCAA
CCTTACGGCACCTCGCAAACGCCCTCGCTTACTTCGTTTGACGTTGATGC
TGCTACTTTTCAGCTGGCGGGTACTAGGATTGATGAGACAGAGTCTACGC
AAAGCCCGAGTAGTAATAATCAGACTTCGTCAGCGCTTGACGTTTCGCTG
GTTCCTTCACCGTCGCAGGAGCTTATGCCGTCGAATATGACGCTGTCTGA
GTCGGTTTCACAAGGGCTTGATTTGCATGCGACAAACCTTTCGCCCGATG
CCGTGAAAGACATCATGAGACATCGTGCCGATCATGTTGACAAGGTACTC
AACAGCGGCACGTCAGTTGGGCTTTCCAACCCTTGTAATATATCAGCTAC
GACTACGAACCAGATGTTCGATGCTTCGCGATTTAACAATGGCAAGAATT
CGGCGTCGGTCAGTCGTTCGCTTAGTTTTCTACTCAAGAATGCACCGTTT
GCTTCGAGAGAGAATTCTATGGATTTCAGAAAAGGCGAGTTTGTTGGTAA
ACGGGATGTGTCGATGGATATGATTCGAAGAGATATTTCGATGGATTTAC
TTTCTTCTAGGAGAATCGGCTCGCAGGAGCGAATTGATGGCGATCTTGTA
CGTGATATGAGTATCGACTTTTTTGGAAGCTCGCTGCGAAACGCCAACCC
CGATTTCAGCATGGAGATGCAGTTCCCCAATGACTCCAACGGAGTGCAGG
GTGGTGCTGTGTTCGAGCTAGGAGCCCTCACCGATGACGTTGTTTTTGGT
CAACCGTTCCATAACCTTAATACTCCATCCAAGACAGAGGCCAACGCTAC
TGCTGACGGGCGGGACGGGAGGTTCTCCAGGTCCAAGATCGGCATGTCAC
AAGACGATCTTATGGTGCATGTGTTGGCAAATCAAGGTGCCCATCAGCAA
TACCGACGCAATGTGAATGGGAGTATAGAAGATCTCCGTGAGCTCAAAAT
GCCGTTCTAG

Coding sequence (CDS) from alignment at tig00000860_pilon:1044131..1046440+

>Ggra8981.t1 ID=Ggra8981.t1|Name=Ggra8981.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2310bp|location=Sequence derived from alignment at tig00000860_pilon:1044131..1046440+ (Gracilaria gracilis GNS1m male)
ATGTCCACCCCGACCGTAACAAACCCTTccgccgacgccgacgccgacgc
cgccgccgccgccgccgcGTCTTCGCCGTCTTCCGTCGACCCCGCTTCCG
CCGCCGCGTCGCCCGTCGTCGCCAAGCGTAAGAATTCGTCGCCCGATCAC
AAGCGCGTCACCATATGGAACCGCGCGCAGGGCCGCAAAATCGCCGGCAA
TGCCGCCCCATTGCAGAAGAACCTCGACGATTACCTGCGTAAACACCCGC
ATTGCGAGCGCTACAACGGACAGGATCGTGCCACTCGCTACACGCAACAT
CGACGTATCTTGCCGGTTGGTGCTAACGTCGGACAGGTTAGACCGCAGCC
GCAGGTCGTCTTGCCCGTGCAAACCGTTCTTCCCTTGCCCGTTTCATCCT
TCTCGTCTTCCAACGCCCTGCATTTGCCTGTGCAGCTAGTTTCGTATCCT
GTGCCGTTGGATGCCGCAAACCTGCACCTTTACAACGCGCAACAACGCCC
GTCCTACTTGGTGCCACAGTATTCATTACCCCCGGATCTTCAACAGCCGC
AACATAGTCAAcaaccacaaccaaaccaacaaccgcaaccgtcccccgcc
ccgcacccgcaccaaccgccaccgcaaccCTCTGCACACCATCAACCTCT
CCCGCCCTCGTCCATCTCCGCGTCGCCGCACCAAGCGCCCGTCGCCAACA
AGCACTCGCCCGTCGCCGCGTCGCACCCGCTCAACGCCCATGCCGCGCTT
CACAAGCACAAGTCCGTGCAACAACCGCCGCTCTTCCCGCATCATACTTT
CCCGCTCATTAATGAGCATGCCGCACTTGATTCCAAGCTCGCGCGACAGG
CCGCCGAGTCCACTGTCGCCAACGCGCTCGCGAAGGCCAACGCCCAGATG
AGGGGTCATGTCAAGGCCGAACCCAACTCCTCTTTTCCCACGAATCAAAC
TGCTGTTCACCCGCActctgccgcttcctcttctgtcccgacttccgcta
ctactgccgctgctgccgccgccgctgcagctgccgccgctgccgccgcc
gctgcggcggccGGCCCGAGAAACGGCGAGGATAAGAGCCCGGTGCAACT
TTCGCCCGCGCAGTTTTTTAGAGATATGAAGGTCATGATGCAGAAGAAGG
CGGAGCAATCGTCGCGCGCTCAGCATGTGCTGCCGAATCAGGCGAAGAAG
AACTCGTCGTCGATACCGTCTTTGCAAGAAATGCCGGTGGTGTCCAATCC
AATGCAGCAAGTTCCCACGCAGCAGATGGTGCGTCCGGCTCAGCGAATTG
CGCACTCTGTGGCACAGTGCTCGGATCAGGCGCCGTTGGCTGCGTCGCAA
CCTTACGGCACCTCGCAAACGCCCTCGCTTACTTCGTTTGACGTTGATGC
TGCTACTTTTCAGCTGGCGGGTACTAGGATTGATGAGACAGAGTCTACGC
AAAGCCCGAGTAGTAATAATCAGACTTCGTCAGCGCTTGACGTTTCGCTG
GTTCCTTCACCGTCGCAGGAGCTTATGCCGTCGAATATGACGCTGTCTGA
GTCGGTTTCACAAGGGCTTGATTTGCATGCGACAAACCTTTCGCCCGATG
CCGTGAAAGACATCATGAGACATCGTGCCGATCATGTTGACAAGGTACTC
AACAGCGGCACGTCAGTTGGGCTTTCCAACCCTTGTAATATATCAGCTAC
GACTACGAACCAGATGTTCGATGCTTCGCGATTTAACAATGGCAAGAATT
CGGCGTCGGTCAGTCGTTCGCTTAGTTTTCTACTCAAGAATGCACCGTTT
GCTTCGAGAGAGAATTCTATGGATTTCAGAAAAGGCGAGTTTGTTGGTAA
ACGGGATGTGTCGATGGATATGATTCGAAGAGATATTTCGATGGATTTAC
TTTCTTCTAGGAGAATCGGCTCGCAGGAGCGAATTGATGGCGATCTTGTA
CGTGATATGAGTATCGACTTTTTTGGAAGCTCGCTGCGAAACGCCAACCC
CGATTTCAGCATGGAGATGCAGTTCCCCAATGACTCCAACGGAGTGCAGG
GTGGTGCTGTGTTCGAGCTAGGAGCCCTCACCGATGACGTTGTTTTTGGT
CAACCGTTCCATAACCTTAATACTCCATCCAAGACAGAGGCCAACGCTAC
TGCTGACGGGCGGGACGGGAGGTTCTCCAGGTCCAAGATCGGCATGTCAC
AAGACGATCTTATGGTGCATGTGTTGGCAAATCAAGGTGCCCATCAGCAA
TACCGACGCAATGTGAATGGGAGTATAGAAGATCTCCGTGAGCTCAAAAT
GCCGTTCTAG