Ggra898.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra898.t1
Unique Name	Ggra898.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	572

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000049_pilon	contig	tig00000049_pilon:156149..157864 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1173020.Cha6605_2330
PFAMs	CARDB,PAP2
Max annot lvl	1117\|Cyanobacteria
Evalue	7.47e-98
EggNOG OGs	COG0671@1\|root,COG0671@2\|Bacteria,1GHH3@1117\|Cyanobacteria
Description	PFAM PAP2 superfamily
COG category	I

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra898	Ggra898	Gracilaria gracilis GNS1m male	gene	tig00000049_pilon 156149..157864 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra898.t1.start1	Ggra898.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000049_pilon 156149..156151 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra898.t1.CDS1	Ggra898.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000049_pilon 156149..157864 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra898.t1.exon1	Ggra898.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000049_pilon 156149..157864 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra898.t1.stop1	Ggra898.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000049_pilon 157862..157864 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra898.t1	Ggra898.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000049_pilon 156149..157864 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000049_pilon:156149..157864+
coding sequence from alignment at tig00000049_pilon:156149..157864+

mRNA sequence

>Ggra898.t1 ID=Ggra898.t1|Name=Ggra898.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=572bp
MKTSVILVAMLSRIAWGSPLDTTIRQTVACTDDSDCIDGFFVPVLTCVDG
VCQSISPSLAALATGPVPGPPIPDAAAAFAGASIPLDAPADPIECASIRD
CPSGEVCVGINPGGICSRAEGIIGLSHFIVNLIQEDYTPLSGSEPTPDQG
GPTRTSRAMAIIYLAAHDAFGLLSGAFAPKLPSASDRRSLESEGSSMSRS
SSFNILSQAEFAMQAAGLTAAKLLYPDQAPLIDAVFRNVTAGGFPAVIGF
GERIGRIWFRIRLNDGSQIPQLDDIFEIGEFLRHQPDPNFPIVTGGGMQQ
NFGRFWGDVKPFVISGVETDAFLGPFPGVNTTEYRENLEEVTIKGQCNDI
TLPDGTLIQDIGIFWGYDSASLIGVPPRAYLQVLLAINELNELPLASQIR
ALTGASVAMADAGIAAWFWKFFYDLWRPTVGVREDRITPEPAWNPRGVPL
SNFFSVPPPPFCVGLNPNFPAYPSGHSSFGTAAFVTIAKLLSKDPKDITV
IFTSDEFNGRTVEGTTGETRRVFTQTITLEDAIQQNKDSRVFLGVHWRFD
SEGGEIVGDQVAEIAANAFQF*

spliced messenger RNA

>Ggra898.t1 ID=Ggra898.t1|Name=Ggra898.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1716bp|location=Sequence derived from alignment at tig00000049_pilon:156149..157864+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAACCTCCGTAATATTAGTGGCTATGCTCTCTCGCATCGCATGGGG
CTCGCCGCTCGACACAACCATCCGCCAGACCGTAGCCTGTACCGATGACT
CCGATTGTATCGACGGTTTCTTTGTTCCAGTGCTCACATGTGTAGATGGT
GTCTGTCAGTCCATCAGTCCTTCGTTGGCTGCTCTCGCGACCGGCCCTGT
GCCTGGCCCTCCAATCCCAGACGCAGCTGCGGCGTTCGCGGGAGCTTCTA
TTCCTTTAGATGCTCCGGCAGATCCCATTGAGTGTGCGTCAATCCGAGAC
TGTCCGTCGGGTGAAGTTTGCGTTGGGATTAACCCAGGTGGTATTTGTTC
TCGAGCCGAAGGTATTATTGGCCTTTCCCATTTCATCGTCAATCTCATCC
AGGAAGACTATACTCCTCTCTCTGGGTCTGAGCCCACCCCAGATCAGGGG
GGCCCCACTCGAACCTCTCGTGCTATGGCCATCATCTATCTTGCTGCTCA
TGATGCGTTCGGTCTCCTCAGTGGCGCATTTGCTCCTAAGTTGCCAAGCG
CTTCCGACCGTAGGTCCCTGGAATCTGAAGGTTCTTCCATGTCACGTTCA
TCGAGTTTTAACATTCTCAGCCAGGCTGAGTTCGCTATGCAAGCTGCCGG
CCTTACAGCAGCAAAGTTGCTGTACCCAGATCAGGCTCCGCTTATTGATG
CAGTTTTCCGCAACGTGACAGCTGGAGGTTTTCCTGCCGTCATCGGATTT
GGGGAACGAATAGGCAGAATTTGGTTTCGCATTCGCCTAAACGACGGATC
TCAGATCCCGCAGCTAGATGACATCTTTGAGATTGGAGAGTTTCTGCGCC
ATCAACCGGACCCAAACTTCCCAATTGTCACCGGTGGTGGAATGCAGCAG
AACTTTGGAAGATTTTGGGGTGATGTGAAGCCGTTCGTTATCAGCGGTGT
TGAAACTGATGCTTTCTTGGGACCTTTCCCAGGTGTGAACACTACGGAAT
ACCGTGAGAATCTGGAAGAAGTTACAATTAAGGGACAATGCAATGATATT
ACACTTCCTGATGGTACTTTAATCCAGGACATCGGTATATTTTGGGGCTA
CGATAGTGCCTCGCTGATTGGGGTACCGCCGCGTGCATATCTGCAAGTCT
TGCTTGCCATCAATGAGTTGAACGAGCTTCCTTTGGCAAGCCAAATTCGA
GCACTGACAGGAGCAAGTGTTGCTATGGCGGACGCCGGAATTGCTGCCTG
GTTCTGGAAGTTCTTCTACGATCTGTGGCGCCCTACAGTTGGAGTCCGTG
AAGACAGAATCACTCCCGAACCTGCGTGGAATCCTCGAGGAGTCCCACTG
AGCAATTTCTTCTCGGTTCCTCCGCCACCCTTCTGTGTTGGTTTAAACCC
GAATTTCCCAGCATATCCGTCGGGGCATTCGTCATTTGGGACAGCCGCCT
TTGTTACGATTGCTAAGCTGCTTTCAAAGGATCCCAAGGACATTACTGTT
ATTTTCACCTCTGATGAGTTTAACGGAAGGACTGTGGAGGGTACTACAGG
AGAAACTCGTCGCGTGTTTACGCAGACTATAACACTTGAGGATGCAATTC
AACAGAACAAGGACAGTCGCGTATTCTTGGGTGTGCACTGGAGATTTGAT
TCGGAAGGTGGTGAGATTGTCGGCGATCAGGTGGCCGAAATTGCTGCGAA
CGCATTTCAATTTTAA

protein sequence of Ggra898.t1

>Ggra898.t1 ID=Ggra898.t1|Name=Ggra898.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=572bp
MKTSVILVAMLSRIAWGSPLDTTIRQTVACTDDSDCIDGFFVPVLTCVDG
VCQSISPSLAALATGPVPGPPIPDAAAAFAGASIPLDAPADPIECASIRD
CPSGEVCVGINPGGICSRAEGIIGLSHFIVNLIQEDYTPLSGSEPTPDQG
GPTRTSRAMAIIYLAAHDAFGLLSGAFAPKLPSASDRRSLESEGSSMSRS
SSFNILSQAEFAMQAAGLTAAKLLYPDQAPLIDAVFRNVTAGGFPAVIGF
GERIGRIWFRIRLNDGSQIPQLDDIFEIGEFLRHQPDPNFPIVTGGGMQQ
NFGRFWGDVKPFVISGVETDAFLGPFPGVNTTEYRENLEEVTIKGQCNDI
TLPDGTLIQDIGIFWGYDSASLIGVPPRAYLQVLLAINELNELPLASQIR
ALTGASVAMADAGIAAWFWKFFYDLWRPTVGVREDRITPEPAWNPRGVPL
SNFFSVPPPPFCVGLNPNFPAYPSGHSSFGTAAFVTIAKLLSKDPKDITV
IFTSDEFNGRTVEGTTGETRRVFTQTITLEDAIQQNKDSRVFLGVHWRFD
SEGGEIVGDQVAEIAANAFQF*

mRNA from alignment at tig00000049_pilon:156149..157864+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra898.t1 ID=Ggra898.t1|Name=Ggra898.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1716bp|location=Sequence derived from alignment at tig00000049_pilon:156149..157864+ (Gracilaria gracilis GNS1m male)
ATGAAAACCTCCGTAATATTAGTGGCTATGCTCTCTCGCATCGCATGGGG
CTCGCCGCTCGACACAACCATCCGCCAGACCGTAGCCTGTACCGATGACT
CCGATTGTATCGACGGTTTCTTTGTTCCAGTGCTCACATGTGTAGATGGT
GTCTGTCAGTCCATCAGTCCTTCGTTGGCTGCTCTCGCGACCGGCCCTGT
GCCTGGCCCTCCAATCCCAGACGCAGCTGCGGCGTTCGCGGGAGCTTCTA
TTCCTTTAGATGCTCCGGCAGATCCCATTGAGTGTGCGTCAATCCGAGAC
TGTCCGTCGGGTGAAGTTTGCGTTGGGATTAACCCAGGTGGTATTTGTTC
TCGAGCCGAAGGTATTATTGGCCTTTCCCATTTCATCGTCAATCTCATCC
AGGAAGACTATACTCCTCTCTCTGGGTCTGAGCCCACCCCAGATCAGGGG
GGCCCCACTCGAACCTCTCGTGCTATGGCCATCATCTATCTTGCTGCTCA
TGATGCGTTCGGTCTCCTCAGTGGCGCATTTGCTCCTAAGTTGCCAAGCG
CTTCCGACCGTAGGTCCCTGGAATCTGAAGGTTCTTCCATGTCACGTTCA
TCGAGTTTTAACATTCTCAGCCAGGCTGAGTTCGCTATGCAAGCTGCCGG
CCTTACAGCAGCAAAGTTGCTGTACCCAGATCAGGCTCCGCTTATTGATG
CAGTTTTCCGCAACGTGACAGCTGGAGGTTTTCCTGCCGTCATCGGATTT
GGGGAACGAATAGGCAGAATTTGGTTTCGCATTCGCCTAAACGACGGATC
TCAGATCCCGCAGCTAGATGACATCTTTGAGATTGGAGAGTTTCTGCGCC
ATCAACCGGACCCAAACTTCCCAATTGTCACCGGTGGTGGAATGCAGCAG
AACTTTGGAAGATTTTGGGGTGATGTGAAGCCGTTCGTTATCAGCGGTGT
TGAAACTGATGCTTTCTTGGGACCTTTCCCAGGTGTGAACACTACGGAAT
ACCGTGAGAATCTGGAAGAAGTTACAATTAAGGGACAATGCAATGATATT
ACACTTCCTGATGGTACTTTAATCCAGGACATCGGTATATTTTGGGGCTA
CGATAGTGCCTCGCTGATTGGGGTACCGCCGCGTGCATATCTGCAAGTCT
TGCTTGCCATCAATGAGTTGAACGAGCTTCCTTTGGCAAGCCAAATTCGA
GCACTGACAGGAGCAAGTGTTGCTATGGCGGACGCCGGAATTGCTGCCTG
GTTCTGGAAGTTCTTCTACGATCTGTGGCGCCCTACAGTTGGAGTCCGTG
AAGACAGAATCACTCCCGAACCTGCGTGGAATCCTCGAGGAGTCCCACTG
AGCAATTTCTTCTCGGTTCCTCCGCCACCCTTCTGTGTTGGTTTAAACCC
GAATTTCCCAGCATATCCGTCGGGGCATTCGTCATTTGGGACAGCCGCCT
TTGTTACGATTGCTAAGCTGCTTTCAAAGGATCCCAAGGACATTACTGTT
ATTTTCACCTCTGATGAGTTTAACGGAAGGACTGTGGAGGGTACTACAGG
AGAAACTCGTCGCGTGTTTACGCAGACTATAACACTTGAGGATGCAATTC
AACAGAACAAGGACAGTCGCGTATTCTTGGGTGTGCACTGGAGATTTGAT
TCGGAAGGTGGTGAGATTGTCGGCGATCAGGTGGCCGAAATTGCTGCGAA
CGCATTTCAATTTTAA

Coding sequence (CDS) from alignment at tig00000049_pilon:156149..157864+

>Ggra898.t1 ID=Ggra898.t1|Name=Ggra898.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1716bp|location=Sequence derived from alignment at tig00000049_pilon:156149..157864+ (Gracilaria gracilis GNS1m male)
ATGAAAACCTCCGTAATATTAGTGGCTATGCTCTCTCGCATCGCATGGGG
CTCGCCGCTCGACACAACCATCCGCCAGACCGTAGCCTGTACCGATGACT
CCGATTGTATCGACGGTTTCTTTGTTCCAGTGCTCACATGTGTAGATGGT
GTCTGTCAGTCCATCAGTCCTTCGTTGGCTGCTCTCGCGACCGGCCCTGT
GCCTGGCCCTCCAATCCCAGACGCAGCTGCGGCGTTCGCGGGAGCTTCTA
TTCCTTTAGATGCTCCGGCAGATCCCATTGAGTGTGCGTCAATCCGAGAC
TGTCCGTCGGGTGAAGTTTGCGTTGGGATTAACCCAGGTGGTATTTGTTC
TCGAGCCGAAGGTATTATTGGCCTTTCCCATTTCATCGTCAATCTCATCC
AGGAAGACTATACTCCTCTCTCTGGGTCTGAGCCCACCCCAGATCAGGGG
GGCCCCACTCGAACCTCTCGTGCTATGGCCATCATCTATCTTGCTGCTCA
TGATGCGTTCGGTCTCCTCAGTGGCGCATTTGCTCCTAAGTTGCCAAGCG
CTTCCGACCGTAGGTCCCTGGAATCTGAAGGTTCTTCCATGTCACGTTCA
TCGAGTTTTAACATTCTCAGCCAGGCTGAGTTCGCTATGCAAGCTGCCGG
CCTTACAGCAGCAAAGTTGCTGTACCCAGATCAGGCTCCGCTTATTGATG
CAGTTTTCCGCAACGTGACAGCTGGAGGTTTTCCTGCCGTCATCGGATTT
GGGGAACGAATAGGCAGAATTTGGTTTCGCATTCGCCTAAACGACGGATC
TCAGATCCCGCAGCTAGATGACATCTTTGAGATTGGAGAGTTTCTGCGCC
ATCAACCGGACCCAAACTTCCCAATTGTCACCGGTGGTGGAATGCAGCAG
AACTTTGGAAGATTTTGGGGTGATGTGAAGCCGTTCGTTATCAGCGGTGT
TGAAACTGATGCTTTCTTGGGACCTTTCCCAGGTGTGAACACTACGGAAT
ACCGTGAGAATCTGGAAGAAGTTACAATTAAGGGACAATGCAATGATATT
ACACTTCCTGATGGTACTTTAATCCAGGACATCGGTATATTTTGGGGCTA
CGATAGTGCCTCGCTGATTGGGGTACCGCCGCGTGCATATCTGCAAGTCT
TGCTTGCCATCAATGAGTTGAACGAGCTTCCTTTGGCAAGCCAAATTCGA
GCACTGACAGGAGCAAGTGTTGCTATGGCGGACGCCGGAATTGCTGCCTG
GTTCTGGAAGTTCTTCTACGATCTGTGGCGCCCTACAGTTGGAGTCCGTG
AAGACAGAATCACTCCCGAACCTGCGTGGAATCCTCGAGGAGTCCCACTG
AGCAATTTCTTCTCGGTTCCTCCGCCACCCTTCTGTGTTGGTTTAAACCC
GAATTTCCCAGCATATCCGTCGGGGCATTCGTCATTTGGGACAGCCGCCT
TTGTTACGATTGCTAAGCTGCTTTCAAAGGATCCCAAGGACATTACTGTT
ATTTTCACCTCTGATGAGTTTAACGGAAGGACTGTGGAGGGTACTACAGG
AGAAACTCGTCGCGTGTTTACGCAGACTATAACACTTGAGGATGCAATTC
AACAGAACAAGGACAGTCGCGTATTCTTGGGTGTGCACTGGAGATTTGAT
TCGGAAGGTGGTGAGATTGTCGGCGATCAGGTGGCCGAAATTGCTGCGAA
CGCATTTCAATTTTAA