Ggra8973.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8973.t1
Unique NameGgra8973.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length565
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:1023559..1025253 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog86049.XP_008730462.1
Preferred namePRP43
PFAMsDEAD,HA2,Helicase_C,OB_NTP_bind
Max annot lvl4751|Fungi
KEGG koko:K12820
KEGG Pathwayko03040,map03040
GOsGO:0000166,GO:0000375,GO:0000377,GO:0000390,GO:0000398,GO:0000460,GO:0000462,GO:0000463,GO:0000466,GO:0000470,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003729,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0005737,GO:0005739,GO:0006139,GO:0006364,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008026,GO:0008144,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022411,GO:0022613,GO:0030490,GO:0030554,GO:0030684,GO:0030686,GO:0032553,GO:0032555,GO:0032559,GO:0032984,GO:0032988,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0035639,GO:0036094,GO:0042254,GO:0042273,GO:0042274,GO:0042623,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0070035,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:1901265,GO:1901360,GO:1901363,GO:1990904
Evalue4.92e-230
EggNOG OGsCOG1643@1|root,KOG0925@2759|Eukaryota,3API8@33154|Opisthokonta,3NVMW@4751|Fungi,3QJMU@4890|Ascomycota,20AST@147545|Eurotiomycetes,3MR7M@451870|Chaetothyriomycetidae
EC3.6.4.13
Descriptionpre-mRNA-splicing factor ATP-dependent RNA helicase PRP43
COG categoryA
BRITEko00000,ko00001,ko01000,ko03009,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8973Ggra8973Gracilaria gracilis GNS1m malegenetig00000860_pilon 1023559..1025253 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8973.t1.stop1Ggra8973.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 1023559..1023561 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8973.t1.CDS1Ggra8973.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 1023559..1025253 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8973.t1.exon1Ggra8973.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 1023559..1025253 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8973.t1.start1Ggra8973.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 1025251..1025253 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8973.t1Ggra8973.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 1023559..1025253 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8973.t1 ID=Ggra8973.t1|Name=Ggra8973.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=565bp
MHDHDLTQYSVLILDEAHERTLSTDVLMGLIKSIIKRRYDLKVIVMSATL
NAEQFQTYFDNAPLLNVPGRMFPVAIHYSQSPENDYVEATIRVVTDVCRS
EPPGDILVFLTGEEEIEETCHRLSSITASRERVDGPVQVLPLYGSLSTDR
QQLVFGPPPPPLFPGGRPGRKVIVATNIAETSLTIDGVVYVVDSGFSKQK
LYNPRVRVESLLVQGISRASAKQRAGRAGRTRPGKCYRLYTEDAFHKELS
ETTHPEILRSNLGNVVLQLKKLGVDDLVHFDFMDPPAPETMMRALELLNY
LGALDDEGDLTEFGSTMSEFPLDPESAAALIHSPEYNCSEEIVSIVAMIS
SAGNCFVRPRHQGKRRGKYHNPHRKFQHPDGDHLTLLNVYHAYKECKARA
ERKYELHRWCQENLLNYRALAMADNSRLQIANIMRKCGLPLVSTSKDDRK
HSENIRKALLKGFFMQVASKSFRKGKFYLTVKDQQSVLLHPSCGLGSIPQ
WVMYNEFVLTNTNYIRTCSQVNGTWLLELAPIYYDLSNFPDGEAKKELER
MSASTRRKRSRVDR*
back to top

spliced messenger RNA

>Ggra8973.t1 ID=Ggra8973.t1|Name=Ggra8973.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1695bp|location=Sequence derived from alignment at tig00000860_pilon:1023559..1025253- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATGATCACGATCTTACTCAATACAGCGTTTTAATCCTTGACGAGGC
CCATGAAAGAACGCTTAGTACGGATGTGTTGATGGGTTTAATCAAGTCTA
TAATCAAGCGCAGGTACGATCTGAAGGTTATTGTCATGTCGGCAACTCTT
AACGCCGAGCAGTTTCAAACTTACTTTGACAATGCACCTTTACTGAATGT
ACCCGGACGCATGTTTCCTGTGGCTATCCATTACTCACAATCTCCGGAAA
ATGATTACGTGGAAGCCACCATTCGGGTTGTCACGGATGTATGTCGTTCT
GAACCACCCGGCGACATCTTGGTCTTCCTAACAGGAGAAGAAGAAATCGA
GGAAACATGTCACCGTTTGTCCAGCATCACCGCGTCTAGGGAACGTGTAG
ACGGACCTGTTCAAGTGCTTCCCTTGTATGGATCGCTTTCAACCGATCGC
CAGCAACTTGTGTTTGGTCCTCCCCCGCCCCCCCTTTTTCCAGGAGGACG
TCCAGGTCGAAAGGTTATTGTCGCCACCAACATTGCTGAGACTTCGCTCA
CCATTGACGGCGTCGTGTACGTGGTAGACTCGGGCTTCTCCAAACAGAAA
TTGTACAACCCACGAGTGCGAGTAGAAAGCCTGCTGGTGCAAGGAATTTC
CCGTGCGTCAGCGAAGCAGAGGGCCGGTCGTGCGGGCCGTACTAGGCCAG
GAAAGTGTTATCGCTTATACACTGAAGACGCGTTTCACAAGGAACTTTCC
GAAACTACTCATCCCGAAATTTTGCGTTCAAACCTAGGGAACGTTGTCTT
GCAGTTGAAGAAACTTGGTGTTGATGATCTGGTACATTTTGATTTCATGG
ATCCTCCTGCGCCGGAAACGATGATGAGAGCCTTGGAGCTTTTGAATTAC
CTTGGAGCGCTAGACGATGAGGGGGATCTCACAGAGTTTGGCAGCACAAT
GTCAGAATTTCCTTTGGACCCAGAGAGCGCCGCAGCTCTTATTCATTCAC
CTGAGTATAACTGCTCGGAAGAGATTGTCAGTATTGTGGCGATGATATCT
TCTGCCGGGAATTGCTTTGTGCGCCCGCGTCATCAAGGGAAAAGACGTGG
AAAATATCACAACCCTCACAGAAAATTCCAGCACCCGGATGGTGATCATC
TCACGCTCTTGAACGTGTATCATGCCTATAAAGAGTGCAAAGCTAGAGCC
GAACGAAAGTATGAATTACATCGCTGGTGCCAGGAGAACCTACTCAACTA
TCGGGCTCTCGCCATGGCTGACAACAGCCGGCTGCAGATCGCGAATATAA
TGCGGAAATGCGGTTTGCCTCTTGTATCCACGTCAAAAGATGACCGAAAG
CACTCAGAGAACATACGAAAAGCACTGTTGAAGGGATTCTTCATGCAGGT
TGCGTCGAAATCATTCCGAAAGGGAAAGTTCTATCTAACTGTGAAGGATC
AGCAAAGCGTGTTACTGCACCCCTCGTGCGGATTGGGAAGTATACCACAG
TGGGTTATGTACAATGAGTTCGTGCTGACAAACACTAACTACATTCGGAC
TTGCAGTCAGGTGAACGGCACATGGCTCCTGGAGTTAGCACCAATATATT
ATGACTTGTCGAATTTTCCAGACGGCGAGGCCAAGAAGGAACTTGAACGC
ATGTCGGCTAGTACCCGAAGAAAACGTAGTAGAGTAGACAGATAA
back to top

protein sequence of Ggra8973.t1

>Ggra8973.t1 ID=Ggra8973.t1|Name=Ggra8973.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=565bp
MHDHDLTQYSVLILDEAHERTLSTDVLMGLIKSIIKRRYDLKVIVMSATL
NAEQFQTYFDNAPLLNVPGRMFPVAIHYSQSPENDYVEATIRVVTDVCRS
EPPGDILVFLTGEEEIEETCHRLSSITASRERVDGPVQVLPLYGSLSTDR
QQLVFGPPPPPLFPGGRPGRKVIVATNIAETSLTIDGVVYVVDSGFSKQK
LYNPRVRVESLLVQGISRASAKQRAGRAGRTRPGKCYRLYTEDAFHKELS
ETTHPEILRSNLGNVVLQLKKLGVDDLVHFDFMDPPAPETMMRALELLNY
LGALDDEGDLTEFGSTMSEFPLDPESAAALIHSPEYNCSEEIVSIVAMIS
SAGNCFVRPRHQGKRRGKYHNPHRKFQHPDGDHLTLLNVYHAYKECKARA
ERKYELHRWCQENLLNYRALAMADNSRLQIANIMRKCGLPLVSTSKDDRK
HSENIRKALLKGFFMQVASKSFRKGKFYLTVKDQQSVLLHPSCGLGSIPQ
WVMYNEFVLTNTNYIRTCSQVNGTWLLELAPIYYDLSNFPDGEAKKELER
MSASTRRKRSRVDR*
back to top

mRNA from alignment at tig00000860_pilon:1023559..1025253-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8973.t1 ID=Ggra8973.t1|Name=Ggra8973.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1695bp|location=Sequence derived from alignment at tig00000860_pilon:1023559..1025253- (Gracilaria gracilis GNS1m male)
ATGCATGATCACGATCTTACTCAATACAGCGTTTTAATCCTTGACGAGGC
CCATGAAAGAACGCTTAGTACGGATGTGTTGATGGGTTTAATCAAGTCTA
TAATCAAGCGCAGGTACGATCTGAAGGTTATTGTCATGTCGGCAACTCTT
AACGCCGAGCAGTTTCAAACTTACTTTGACAATGCACCTTTACTGAATGT
ACCCGGACGCATGTTTCCTGTGGCTATCCATTACTCACAATCTCCGGAAA
ATGATTACGTGGAAGCCACCATTCGGGTTGTCACGGATGTATGTCGTTCT
GAACCACCCGGCGACATCTTGGTCTTCCTAACAGGAGAAGAAGAAATCGA
GGAAACATGTCACCGTTTGTCCAGCATCACCGCGTCTAGGGAACGTGTAG
ACGGACCTGTTCAAGTGCTTCCCTTGTATGGATCGCTTTCAACCGATCGC
CAGCAACTTGTGTTTGGTCCTCCCCCGCCCCCCCTTTTTCCAGGAGGACG
TCCAGGTCGAAAGGTTATTGTCGCCACCAACATTGCTGAGACTTCGCTCA
CCATTGACGGCGTCGTGTACGTGGTAGACTCGGGCTTCTCCAAACAGAAA
TTGTACAACCCACGAGTGCGAGTAGAAAGCCTGCTGGTGCAAGGAATTTC
CCGTGCGTCAGCGAAGCAGAGGGCCGGTCGTGCGGGCCGTACTAGGCCAG
GAAAGTGTTATCGCTTATACACTGAAGACGCGTTTCACAAGGAACTTTCC
GAAACTACTCATCCCGAAATTTTGCGTTCAAACCTAGGGAACGTTGTCTT
GCAGTTGAAGAAACTTGGTGTTGATGATCTGGTACATTTTGATTTCATGG
ATCCTCCTGCGCCGGAAACGATGATGAGAGCCTTGGAGCTTTTGAATTAC
CTTGGAGCGCTAGACGATGAGGGGGATCTCACAGAGTTTGGCAGCACAAT
GTCAGAATTTCCTTTGGACCCAGAGAGCGCCGCAGCTCTTATTCATTCAC
CTGAGTATAACTGCTCGGAAGAGATTGTCAGTATTGTGGCGATGATATCT
TCTGCCGGGAATTGCTTTGTGCGCCCGCGTCATCAAGGGAAAAGACGTGG
AAAATATCACAACCCTCACAGAAAATTCCAGCACCCGGATGGTGATCATC
TCACGCTCTTGAACGTGTATCATGCCTATAAAGAGTGCAAAGCTAGAGCC
GAACGAAAGTATGAATTACATCGCTGGTGCCAGGAGAACCTACTCAACTA
TCGGGCTCTCGCCATGGCTGACAACAGCCGGCTGCAGATCGCGAATATAA
TGCGGAAATGCGGTTTGCCTCTTGTATCCACGTCAAAAGATGACCGAAAG
CACTCAGAGAACATACGAAAAGCACTGTTGAAGGGATTCTTCATGCAGGT
TGCGTCGAAATCATTCCGAAAGGGAAAGTTCTATCTAACTGTGAAGGATC
AGCAAAGCGTGTTACTGCACCCCTCGTGCGGATTGGGAAGTATACCACAG
TGGGTTATGTACAATGAGTTCGTGCTGACAAACACTAACTACATTCGGAC
TTGCAGTCAGGTGAACGGCACATGGCTCCTGGAGTTAGCACCAATATATT
ATGACTTGTCGAATTTTCCAGACGGCGAGGCCAAGAAGGAACTTGAACGC
ATGTCGGCTAGTACCCGAAGAAAACGTAGTAGAGTAGACAGATAA
back to top

Coding sequence (CDS) from alignment at tig00000860_pilon:1023559..1025253-

>Ggra8973.t1 ID=Ggra8973.t1|Name=Ggra8973.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1695bp|location=Sequence derived from alignment at tig00000860_pilon:1023559..1025253- (Gracilaria gracilis GNS1m male)
ATGCATGATCACGATCTTACTCAATACAGCGTTTTAATCCTTGACGAGGC
CCATGAAAGAACGCTTAGTACGGATGTGTTGATGGGTTTAATCAAGTCTA
TAATCAAGCGCAGGTACGATCTGAAGGTTATTGTCATGTCGGCAACTCTT
AACGCCGAGCAGTTTCAAACTTACTTTGACAATGCACCTTTACTGAATGT
ACCCGGACGCATGTTTCCTGTGGCTATCCATTACTCACAATCTCCGGAAA
ATGATTACGTGGAAGCCACCATTCGGGTTGTCACGGATGTATGTCGTTCT
GAACCACCCGGCGACATCTTGGTCTTCCTAACAGGAGAAGAAGAAATCGA
GGAAACATGTCACCGTTTGTCCAGCATCACCGCGTCTAGGGAACGTGTAG
ACGGACCTGTTCAAGTGCTTCCCTTGTATGGATCGCTTTCAACCGATCGC
CAGCAACTTGTGTTTGGTCCTCCCCCGCCCCCCCTTTTTCCAGGAGGACG
TCCAGGTCGAAAGGTTATTGTCGCCACCAACATTGCTGAGACTTCGCTCA
CCATTGACGGCGTCGTGTACGTGGTAGACTCGGGCTTCTCCAAACAGAAA
TTGTACAACCCACGAGTGCGAGTAGAAAGCCTGCTGGTGCAAGGAATTTC
CCGTGCGTCAGCGAAGCAGAGGGCCGGTCGTGCGGGCCGTACTAGGCCAG
GAAAGTGTTATCGCTTATACACTGAAGACGCGTTTCACAAGGAACTTTCC
GAAACTACTCATCCCGAAATTTTGCGTTCAAACCTAGGGAACGTTGTCTT
GCAGTTGAAGAAACTTGGTGTTGATGATCTGGTACATTTTGATTTCATGG
ATCCTCCTGCGCCGGAAACGATGATGAGAGCCTTGGAGCTTTTGAATTAC
CTTGGAGCGCTAGACGATGAGGGGGATCTCACAGAGTTTGGCAGCACAAT
GTCAGAATTTCCTTTGGACCCAGAGAGCGCCGCAGCTCTTATTCATTCAC
CTGAGTATAACTGCTCGGAAGAGATTGTCAGTATTGTGGCGATGATATCT
TCTGCCGGGAATTGCTTTGTGCGCCCGCGTCATCAAGGGAAAAGACGTGG
AAAATATCACAACCCTCACAGAAAATTCCAGCACCCGGATGGTGATCATC
TCACGCTCTTGAACGTGTATCATGCCTATAAAGAGTGCAAAGCTAGAGCC
GAACGAAAGTATGAATTACATCGCTGGTGCCAGGAGAACCTACTCAACTA
TCGGGCTCTCGCCATGGCTGACAACAGCCGGCTGCAGATCGCGAATATAA
TGCGGAAATGCGGTTTGCCTCTTGTATCCACGTCAAAAGATGACCGAAAG
CACTCAGAGAACATACGAAAAGCACTGTTGAAGGGATTCTTCATGCAGGT
TGCGTCGAAATCATTCCGAAAGGGAAAGTTCTATCTAACTGTGAAGGATC
AGCAAAGCGTGTTACTGCACCCCTCGTGCGGATTGGGAAGTATACCACAG
TGGGTTATGTACAATGAGTTCGTGCTGACAAACACTAACTACATTCGGAC
TTGCAGTCAGGTGAACGGCACATGGCTCCTGGAGTTAGCACCAATATATT
ATGACTTGTCGAATTTTCCAGACGGCGAGGCCAAGAAGGAACTTGAACGC
ATGTCGGCTAGTACCCGAAGAAAACGTAGTAGAGTAGACAGATAA
back to top