Ggra8970.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8970.t1
Unique NameGgra8970.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length359
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:1001426..1002502 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog90675.XP_010473051.1
PFAMsMethyltransf_21
Max annot lvl35493|Streptophyta
Evalue4.4e-13
EggNOG OGs2D0ER@1|root,2SDXZ@2759|Eukaryota,37XZB@33090|Viridiplantae,3GX61@35493|Streptophyta,3HW7P@3699|Brassicales
DescriptionMethyltransferase FkbM domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8970Ggra8970Gracilaria gracilis GNS1m malegenetig00000860_pilon 1001426..1002502 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8970.t1.stop1Ggra8970.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 1001426..1001428 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8970.t1.CDS1Ggra8970.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 1001426..1002502 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8970.t1.exon1Ggra8970.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 1001426..1002502 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8970.t1.start1Ggra8970.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 1002500..1002502 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8970.t1Ggra8970.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 1001426..1002502 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8970.t1 ID=Ggra8970.t1|Name=Ggra8970.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=359bp
MGSMKSEEKRGTPRRIAENIVKIISKLSITAFLGIRRNARTISLVVIIAC
VLVLIASTSDNDMLSRHGREKASSYTKSVVRHCRPNPSYGLGRTFDARVR
GVNVSYAAWTGEKFFEHEVVAIRTHEAVRMMSKLKRSATLLDVGANIGKV
TFPTLAMAQTHTVVAVEPVGFNIDHLCMTANLNGWLGHAGFLLLKAALSD
KEGSMEIFVPEGREDNAALSESAATANVGGKDHGEQVNLLTGDKLLSEGG
FKPDLIKIDTQGHELFVLRGLREYMAKTKPGELVIMAESDPKLMRKSGVN
PKDIYQLVVVDLGYNAYCRPLIDVENERFVVKGTPLSYEQYPPGGCRDIF
YYKSGQNL*
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spliced messenger RNA

>Ggra8970.t1 ID=Ggra8970.t1|Name=Ggra8970.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1077bp|location=Sequence derived from alignment at tig00000860_pilon:1001426..1002502- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGTCAATGAAGAGCGAAGAAAAGCGTGGAACACCGCGCAGGATCGC
TGAAAACATCGTTAAGATCATTTCAAAACTATCGATAACAGCATTTCTTG
GGATTCGACGCAATGCGAGAACAATTTCCCTCGTCGTGATTATCGCCTGC
GTCCTCGTATTGATTGCCAGCACCTCCGACAATGATATGCTATCCAGACA
TGGGCGAGAAAAAGCGAGCAGCTACACGAAATCCGTAGTCCGTCATTGCA
GGCCAAACCCGTCGTATGGCTTGGGACGAACGTTCGACGCCCGTGTACGG
GGAGTGAATGTCTCATACGCAGCATGGACTGGAGAAAAATTCTTTGAGCA
CGAAGTGGTGGCTATCCGAACTCATGAGGCCGTGAGAATGATGAGCAAGT
TGAAAAGGTCGGCCACACTCTTGGACGTGGGGGCAAACATAGGAAAGGTG
ACGTTTCCCACTCTAGCGATGGCGCAGACTCACACAGTAGTCGCAGTCGA
ACCCGTAGGTTTCAATATAGACCACTTGTGCATGACTGCAAATTTGAATG
GTTGGTTGGGACACGCAGGATTCTTACTGCTGAAAGCCGCTTTGAGTGAC
AAAGAAGGCAGTATGGAAATATTCGTTCCTGAAGGTCGTGAGGATAATGC
TGCATTGAGCGAGTCAGCAGCCACAGCAAATGTTGGCGGAAAGGATCATG
GAGAGCAGGTAAACCTTCTCACAGGAGACAAACTGTTAAGCGAGGGCGGC
TTCAAGCCCGATCTGATCAAAATCGACACACAGGGTCACGAGCTGTTCGT
GTTGCGAGGATTGAGAGAGTACATGGCGAAAACGAAACCGGGTGAGCTGG
TGATCATGGCCGAGAGCGATCCCAAGTTGATGCGCAAGTCAGGCGTAAAC
CCGAAGGATATTTATCAGCTTGTGGTAGTAGATTTGGGCTACAATGCTTA
TTGCAGACCTCTCATTGACGTGGAAAATGAACGATTTGTGGTGAAGGGAA
CGCCACTGAGCTATGAACAATATCCGCCCGGGGGTTGTCGGGATATCTTC
TACTATAAGAGCGGACAAAACTTATGA
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protein sequence of Ggra8970.t1

>Ggra8970.t1 ID=Ggra8970.t1|Name=Ggra8970.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=359bp
MGSMKSEEKRGTPRRIAENIVKIISKLSITAFLGIRRNARTISLVVIIAC
VLVLIASTSDNDMLSRHGREKASSYTKSVVRHCRPNPSYGLGRTFDARVR
GVNVSYAAWTGEKFFEHEVVAIRTHEAVRMMSKLKRSATLLDVGANIGKV
TFPTLAMAQTHTVVAVEPVGFNIDHLCMTANLNGWLGHAGFLLLKAALSD
KEGSMEIFVPEGREDNAALSESAATANVGGKDHGEQVNLLTGDKLLSEGG
FKPDLIKIDTQGHELFVLRGLREYMAKTKPGELVIMAESDPKLMRKSGVN
PKDIYQLVVVDLGYNAYCRPLIDVENERFVVKGTPLSYEQYPPGGCRDIF
YYKSGQNL*
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mRNA from alignment at tig00000860_pilon:1001426..1002502-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8970.t1 ID=Ggra8970.t1|Name=Ggra8970.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1077bp|location=Sequence derived from alignment at tig00000860_pilon:1001426..1002502- (Gracilaria gracilis GNS1m male)
ATGGGGTCAATGAAGAGCGAAGAAAAGCGTGGAACACCGCGCAGGATCGC
TGAAAACATCGTTAAGATCATTTCAAAACTATCGATAACAGCATTTCTTG
GGATTCGACGCAATGCGAGAACAATTTCCCTCGTCGTGATTATCGCCTGC
GTCCTCGTATTGATTGCCAGCACCTCCGACAATGATATGCTATCCAGACA
TGGGCGAGAAAAAGCGAGCAGCTACACGAAATCCGTAGTCCGTCATTGCA
GGCCAAACCCGTCGTATGGCTTGGGACGAACGTTCGACGCCCGTGTACGG
GGAGTGAATGTCTCATACGCAGCATGGACTGGAGAAAAATTCTTTGAGCA
CGAAGTGGTGGCTATCCGAACTCATGAGGCCGTGAGAATGATGAGCAAGT
TGAAAAGGTCGGCCACACTCTTGGACGTGGGGGCAAACATAGGAAAGGTG
ACGTTTCCCACTCTAGCGATGGCGCAGACTCACACAGTAGTCGCAGTCGA
ACCCGTAGGTTTCAATATAGACCACTTGTGCATGACTGCAAATTTGAATG
GTTGGTTGGGACACGCAGGATTCTTACTGCTGAAAGCCGCTTTGAGTGAC
AAAGAAGGCAGTATGGAAATATTCGTTCCTGAAGGTCGTGAGGATAATGC
TGCATTGAGCGAGTCAGCAGCCACAGCAAATGTTGGCGGAAAGGATCATG
GAGAGCAGGTAAACCTTCTCACAGGAGACAAACTGTTAAGCGAGGGCGGC
TTCAAGCCCGATCTGATCAAAATCGACACACAGGGTCACGAGCTGTTCGT
GTTGCGAGGATTGAGAGAGTACATGGCGAAAACGAAACCGGGTGAGCTGG
TGATCATGGCCGAGAGCGATCCCAAGTTGATGCGCAAGTCAGGCGTAAAC
CCGAAGGATATTTATCAGCTTGTGGTAGTAGATTTGGGCTACAATGCTTA
TTGCAGACCTCTCATTGACGTGGAAAATGAACGATTTGTGGTGAAGGGAA
CGCCACTGAGCTATGAACAATATCCGCCCGGGGGTTGTCGGGATATCTTC
TACTATAAGAGCGGACAAAACTTATGA
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Coding sequence (CDS) from alignment at tig00000860_pilon:1001426..1002502-

>Ggra8970.t1 ID=Ggra8970.t1|Name=Ggra8970.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1077bp|location=Sequence derived from alignment at tig00000860_pilon:1001426..1002502- (Gracilaria gracilis GNS1m male)
ATGGGGTCAATGAAGAGCGAAGAAAAGCGTGGAACACCGCGCAGGATCGC
TGAAAACATCGTTAAGATCATTTCAAAACTATCGATAACAGCATTTCTTG
GGATTCGACGCAATGCGAGAACAATTTCCCTCGTCGTGATTATCGCCTGC
GTCCTCGTATTGATTGCCAGCACCTCCGACAATGATATGCTATCCAGACA
TGGGCGAGAAAAAGCGAGCAGCTACACGAAATCCGTAGTCCGTCATTGCA
GGCCAAACCCGTCGTATGGCTTGGGACGAACGTTCGACGCCCGTGTACGG
GGAGTGAATGTCTCATACGCAGCATGGACTGGAGAAAAATTCTTTGAGCA
CGAAGTGGTGGCTATCCGAACTCATGAGGCCGTGAGAATGATGAGCAAGT
TGAAAAGGTCGGCCACACTCTTGGACGTGGGGGCAAACATAGGAAAGGTG
ACGTTTCCCACTCTAGCGATGGCGCAGACTCACACAGTAGTCGCAGTCGA
ACCCGTAGGTTTCAATATAGACCACTTGTGCATGACTGCAAATTTGAATG
GTTGGTTGGGACACGCAGGATTCTTACTGCTGAAAGCCGCTTTGAGTGAC
AAAGAAGGCAGTATGGAAATATTCGTTCCTGAAGGTCGTGAGGATAATGC
TGCATTGAGCGAGTCAGCAGCCACAGCAAATGTTGGCGGAAAGGATCATG
GAGAGCAGGTAAACCTTCTCACAGGAGACAAACTGTTAAGCGAGGGCGGC
TTCAAGCCCGATCTGATCAAAATCGACACACAGGGTCACGAGCTGTTCGT
GTTGCGAGGATTGAGAGAGTACATGGCGAAAACGAAACCGGGTGAGCTGG
TGATCATGGCCGAGAGCGATCCCAAGTTGATGCGCAAGTCAGGCGTAAAC
CCGAAGGATATTTATCAGCTTGTGGTAGTAGATTTGGGCTACAATGCTTA
TTGCAGACCTCTCATTGACGTGGAAAATGAACGATTTGTGGTGAAGGGAA
CGCCACTGAGCTATGAACAATATCCGCCCGGGGGTTGTCGGGATATCTTC
TACTATAAGAGCGGACAAAACTTATGA
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