Ggra897.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra897.t1
Unique NameGgra897.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length413
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000049_piloncontigtig00000049_pilon:105575..106813 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog927677.ALVU02000001_gene783
PFAMsFA_desaturase
Max annot lvl1117|Cyanobacteria
Evalue2.33e-60
EggNOG OGsCOG3239@1|root,COG3239@2|Bacteria,1G16B@1117|Cyanobacteria
DescriptionPFAM Fatty acid desaturase
COG categoryI
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra897Ggra897Gracilaria gracilis GNS1m malegenetig00000049_pilon 105575..106813 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra897.t1.stop1Ggra897.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000049_pilon 105575..105577 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra897.t1.CDS1Ggra897.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000049_pilon 105575..106813 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra897.t1.exon1Ggra897.t1.exon1Gracilaria gracilis GNS1m maleexontig00000049_pilon 105575..106813 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra897.t1.start1Ggra897.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000049_pilon 106811..106813 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra897.t1Ggra897.t1Gracilaria gracilis GNS1m malepolypeptidetig00000049_pilon 105575..106813 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra897.t1 ID=Ggra897.t1|Name=Ggra897.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=413bp
MKSRTTFSKVVPRAAGAEIGRSTSRMVQSVARSQPLEGKLLEQRLHKNLQ
DIKNNRLLSRHSHSPLLHFAQTCLNLLALFVVLIGFPACVSLLLSRSWIV
RLFATFALVYIKILSFLAHHELVHGTVFRSRKVNIFFGRLVDVVNGGQYW
TIEELQRQHIEHHADKVDYVSFDSAAFLSWLPRPLEITIVILEWCFIPAM
AYISRLRSVFACFWHPRRLHARTRTVCVLLFRMSGYAAMAWKDSRALALY
FISHNMFVNAYRLLDCFSHTFEELPVGADAPKGLTAAYEQNRTISLMVTS
GRRSWLNAFFLNFGYHGAHHVDPTGPWLAYPELDGRIFEGCAGNMPRHVS
PLRLFNRFVAERISRLYSTGGMGVPLVDEKRDLMVGGLWGVLDPSILMLE
VAPTIEVLKRDH*
back to top

spliced messenger RNA

>Ggra897.t1 ID=Ggra897.t1|Name=Ggra897.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1239bp|location=Sequence derived from alignment at tig00000049_pilon:105575..106813- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTCGAGAACTACCTTCTCAAAAGTGGTGCCTCGTGCGGCGGGTGC
CGAAATTGGTCGCTCCACGTCGCGCATGGTACAGTCTGTGGCACGGTCGC
AACCGCTCGAAGGGAAACTCCTTGAACAGCGCCTTCATAAAAACTTGCAG
GACATAAAGAACAATCGCCTTCTCAGCCGTCACAGCCACTCGCCACTGTT
GCACTTTGCGCAAACCTGTCTCAACTTGTTGGCGCTTTTTGTTGTACTCA
TTGGCTTTCCTGCATGTGTCTCACTCTTGCTTTCGCGCTCGTGGATCGTA
CGACTGTTCGCGACTTTCGCCTTGGTGTACATCAAGATTCTGTCCTTCTT
GGCGCACCACGAACTGGTACATGGCACCGTGTTTCGCTCCAGGAAAGTAA
ACATATTCTTCGGTCGGCTTGTTGACGTGGTCAACGGAGGCCAGTATTGG
ACAATCGAGGAGTTGCAGCGACAACACATCGAACACCACGCTGACAAAGT
GGACTACGTCTCCTTCGACAGCGCTGCGTTCTTATCGTGGCTGCCACGTC
CTTTGGAGATCACCATCGTCATACTTGAATGGTGCTTTATCCCAGCTATG
GCGTATATCTCACGACTTCGCAGTGTCTTTGCGTGTTTCTGGCATCCTCG
CCGACTGCACGCTCGCACACGAACCGTGTGTGTGCTGTTGTTTCGCATGA
GCGGTTACGCGGCGATGGCATGGAAAGACTCTCGTGCACTGGCACTGTAC
TTCATCAGTCACAACATGTTCGTCAACGCGTACAGACTTTTGGACTGTTT
CTCACATACGTTCGAGGAACTGCCAGTTGGCGCTGACGCACCAAAGGGGC
TCACTGCTGCCTATGAGCAAAATCGCACTATATCGCTCATGGTGACGTCG
GGGCGCAGGTCGTGGCTCAATGCATTTTTTCTCAATTTCGGATACCACGG
AGCGCACCATGTGGACCCCACTGGACCGTGGCTCGCGTATCCTGAGCTCG
ATGGACGTATCTTTGAGGGCTGTGCGGGCAACATGCCGCGACATGTATCG
CCGCTACGACTGTTCAATCGCTTTGTGGCCGAGAGAATCAGCAGACTGTA
CAGCACTGGCGGGATGGGTGTCCCGCTTGTGGACGAGAAGCGAGACTTGA
TGGTAGGCGGACTGTGGGGAGTGCTTGACCCCAGTATTCTCATGCTTGAA
GTGGCTCCAACAATTGAGGTGTTAAAGAGAGATCACTGA
back to top

protein sequence of Ggra897.t1

>Ggra897.t1 ID=Ggra897.t1|Name=Ggra897.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=413bp
MKSRTTFSKVVPRAAGAEIGRSTSRMVQSVARSQPLEGKLLEQRLHKNLQ
DIKNNRLLSRHSHSPLLHFAQTCLNLLALFVVLIGFPACVSLLLSRSWIV
RLFATFALVYIKILSFLAHHELVHGTVFRSRKVNIFFGRLVDVVNGGQYW
TIEELQRQHIEHHADKVDYVSFDSAAFLSWLPRPLEITIVILEWCFIPAM
AYISRLRSVFACFWHPRRLHARTRTVCVLLFRMSGYAAMAWKDSRALALY
FISHNMFVNAYRLLDCFSHTFEELPVGADAPKGLTAAYEQNRTISLMVTS
GRRSWLNAFFLNFGYHGAHHVDPTGPWLAYPELDGRIFEGCAGNMPRHVS
PLRLFNRFVAERISRLYSTGGMGVPLVDEKRDLMVGGLWGVLDPSILMLE
VAPTIEVLKRDH*
back to top

mRNA from alignment at tig00000049_pilon:105575..106813-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra897.t1 ID=Ggra897.t1|Name=Ggra897.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1239bp|location=Sequence derived from alignment at tig00000049_pilon:105575..106813- (Gracilaria gracilis GNS1m male)
ATGAAGTCGAGAACTACCTTCTCAAAAGTGGTGCCTCGTGCGGCGGGTGC
CGAAATTGGTCGCTCCACGTCGCGCATGGTACAGTCTGTGGCACGGTCGC
AACCGCTCGAAGGGAAACTCCTTGAACAGCGCCTTCATAAAAACTTGCAG
GACATAAAGAACAATCGCCTTCTCAGCCGTCACAGCCACTCGCCACTGTT
GCACTTTGCGCAAACCTGTCTCAACTTGTTGGCGCTTTTTGTTGTACTCA
TTGGCTTTCCTGCATGTGTCTCACTCTTGCTTTCGCGCTCGTGGATCGTA
CGACTGTTCGCGACTTTCGCCTTGGTGTACATCAAGATTCTGTCCTTCTT
GGCGCACCACGAACTGGTACATGGCACCGTGTTTCGCTCCAGGAAAGTAA
ACATATTCTTCGGTCGGCTTGTTGACGTGGTCAACGGAGGCCAGTATTGG
ACAATCGAGGAGTTGCAGCGACAACACATCGAACACCACGCTGACAAAGT
GGACTACGTCTCCTTCGACAGCGCTGCGTTCTTATCGTGGCTGCCACGTC
CTTTGGAGATCACCATCGTCATACTTGAATGGTGCTTTATCCCAGCTATG
GCGTATATCTCACGACTTCGCAGTGTCTTTGCGTGTTTCTGGCATCCTCG
CCGACTGCACGCTCGCACACGAACCGTGTGTGTGCTGTTGTTTCGCATGA
GCGGTTACGCGGCGATGGCATGGAAAGACTCTCGTGCACTGGCACTGTAC
TTCATCAGTCACAACATGTTCGTCAACGCGTACAGACTTTTGGACTGTTT
CTCACATACGTTCGAGGAACTGCCAGTTGGCGCTGACGCACCAAAGGGGC
TCACTGCTGCCTATGAGCAAAATCGCACTATATCGCTCATGGTGACGTCG
GGGCGCAGGTCGTGGCTCAATGCATTTTTTCTCAATTTCGGATACCACGG
AGCGCACCATGTGGACCCCACTGGACCGTGGCTCGCGTATCCTGAGCTCG
ATGGACGTATCTTTGAGGGCTGTGCGGGCAACATGCCGCGACATGTATCG
CCGCTACGACTGTTCAATCGCTTTGTGGCCGAGAGAATCAGCAGACTGTA
CAGCACTGGCGGGATGGGTGTCCCGCTTGTGGACGAGAAGCGAGACTTGA
TGGTAGGCGGACTGTGGGGAGTGCTTGACCCCAGTATTCTCATGCTTGAA
GTGGCTCCAACAATTGAGGTGTTAAAGAGAGATCACTGA
back to top

Coding sequence (CDS) from alignment at tig00000049_pilon:105575..106813-

>Ggra897.t1 ID=Ggra897.t1|Name=Ggra897.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1239bp|location=Sequence derived from alignment at tig00000049_pilon:105575..106813- (Gracilaria gracilis GNS1m male)
ATGAAGTCGAGAACTACCTTCTCAAAAGTGGTGCCTCGTGCGGCGGGTGC
CGAAATTGGTCGCTCCACGTCGCGCATGGTACAGTCTGTGGCACGGTCGC
AACCGCTCGAAGGGAAACTCCTTGAACAGCGCCTTCATAAAAACTTGCAG
GACATAAAGAACAATCGCCTTCTCAGCCGTCACAGCCACTCGCCACTGTT
GCACTTTGCGCAAACCTGTCTCAACTTGTTGGCGCTTTTTGTTGTACTCA
TTGGCTTTCCTGCATGTGTCTCACTCTTGCTTTCGCGCTCGTGGATCGTA
CGACTGTTCGCGACTTTCGCCTTGGTGTACATCAAGATTCTGTCCTTCTT
GGCGCACCACGAACTGGTACATGGCACCGTGTTTCGCTCCAGGAAAGTAA
ACATATTCTTCGGTCGGCTTGTTGACGTGGTCAACGGAGGCCAGTATTGG
ACAATCGAGGAGTTGCAGCGACAACACATCGAACACCACGCTGACAAAGT
GGACTACGTCTCCTTCGACAGCGCTGCGTTCTTATCGTGGCTGCCACGTC
CTTTGGAGATCACCATCGTCATACTTGAATGGTGCTTTATCCCAGCTATG
GCGTATATCTCACGACTTCGCAGTGTCTTTGCGTGTTTCTGGCATCCTCG
CCGACTGCACGCTCGCACACGAACCGTGTGTGTGCTGTTGTTTCGCATGA
GCGGTTACGCGGCGATGGCATGGAAAGACTCTCGTGCACTGGCACTGTAC
TTCATCAGTCACAACATGTTCGTCAACGCGTACAGACTTTTGGACTGTTT
CTCACATACGTTCGAGGAACTGCCAGTTGGCGCTGACGCACCAAAGGGGC
TCACTGCTGCCTATGAGCAAAATCGCACTATATCGCTCATGGTGACGTCG
GGGCGCAGGTCGTGGCTCAATGCATTTTTTCTCAATTTCGGATACCACGG
AGCGCACCATGTGGACCCCACTGGACCGTGGCTCGCGTATCCTGAGCTCG
ATGGACGTATCTTTGAGGGCTGTGCGGGCAACATGCCGCGACATGTATCG
CCGCTACGACTGTTCAATCGCTTTGTGGCCGAGAGAATCAGCAGACTGTA
CAGCACTGGCGGGATGGGTGTCCCGCTTGTGGACGAGAAGCGAGACTTGA
TGGTAGGCGGACTGTGGGGAGTGCTTGACCCCAGTATTCTCATGCTTGAA
GTGGCTCCAACAATTGAGGTGTTAAAGAGAGATCACTGA
back to top