Ggra8967.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8967.t1
Unique NameGgra8967.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length443
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:990444..991878 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog159749.K0RYK8
PFAMsHA
Max annot lvl2836|Bacillariophyta
Evalue2.56e-49
EggNOG OGs2E1M9@1|root,2S8XU@2759|Eukaryota,2XH87@2836|Bacillariophyta
DescriptionHelicase associated domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8967Ggra8967Gracilaria gracilis GNS1m malegenetig00000860_pilon 990444..991878 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8967.t1Ggra8967.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 990444..991878 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8967.t1.stop1Ggra8967.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 990444..990446 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8967.t1.CDS1Ggra8967.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 990444..991570 -
Ggra8967.t1.CDS2Ggra8967.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000860_pilon 991677..991878 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8967.t1.exon1Ggra8967.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 990444..991570 -
Ggra8967.t1.exon2Ggra8967.t1.exon2Gracilaria gracilis GNS1m maleexontig00000860_pilon 991677..991878 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8967.t1.intron1Ggra8967.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000860_pilon 991571..991676 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8967.t1.start1Ggra8967.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 991876..991878 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8967.t1 ID=Ggra8967.t1|Name=Ggra8967.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=443bp
MNASTDSRCSTLHTRSSSPTPSLNPTWESRYEELLRWRAEHGDTCVPKAE
GALGRWVARQRELKRTGKLDGTREQALNSINFVWNTVTAMWEERFRKLSE
WKKQHGHCAVPIAQGELGTWVSKQRQLRKRGKLSKEKIDALDSLKFTWST
AEADWEDKFKRLVEWTRERGHASVPFNEGELGWWVNTQRQCKRKGKLSAS
REARLQSLGFVWNPSNSRSRAANAAAAATAAAAAAAAAAAAAATATATSN
TVSSADTTPSCTPEKAEKSVCVHDAAAMMLFPNDLTLPAPYLKEEMELFG
DSCSAMCADVLLADMGAAAGGNELMGSGMAGESLLQSQWGGSILSSPLFG
DNSAAAAAAAMNVGAQPLGLGTGLMDGGQAFGMGMGMGMGMGMGMGMGMG
MGMGMGSIVPSAADDLEQILSRDHGCVLDQSTIDSLTCEEQL*
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spliced messenger RNA

>Ggra8967.t1 ID=Ggra8967.t1|Name=Ggra8967.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1329bp|location=Sequence derived from alignment at tig00000860_pilon:990444..991878- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGCTTCCACCGACTCTCGCTGCTCTACGCTGCACACGCGCTCAAG
CTCGCCGACGCCATCGCTGAATCCGACGTGGGAGTCGCGCTATGAGGAGC
TTTTGAGATGGCGCGCCGAGCACGGCGACACGTGCGTGCCCAAGGCGGAG
GGCGCGCTCGGTCGATGGGTGGCACGTCAGCGCGAGCTGAAGAGAACCGG
CAAACTGGATGGCACGCGCGAACAGGCGCTCAACTCGATCAACTTTGTGT
GGAACACGGTGACGGCAATGTGGGAGGAGCGCTTCCGCAAGCTGAGCGAG
TGGAAGAAGCAGCACGGCCACTGCGCGGTGCCCATTGCGCAGGGCGAGCT
GGGCACGTGGGTGTCCAAGCAGCGGCAGCTGCGCAAGCGCGGCAAGCTGT
CCAAGGAGAAGATCGACGCGCTGGACAGCCTCAAGTTCACGTGGAGCACG
GCCGAGGCCGACTGGGAGGACAAGTTCAAGCGGCTGGTGGAGTGGACGCG
CGAACGCGGCCACGCCAGCGTGCCGTTCAACGAGGGCGAGCTCGGCTGGT
GGGTCAACACGCAGCGCCAGTGCAAGCGCAAGGGCAAGCTCAGCGCGTCG
CGCGAGGCGCGGCTGCAGTCGCTGGGCTTTGTGTGGAACCCGTCCAACTC
GCGGTCGCGCGCGGCCAATGCGGCGGCGGCGGCGACGGCGGCGGCGGCGG
CAGCAGCGGCGGCGGCAGCGGCGGCAGCGACGGCGACGGCGACGAGTAAC
ACGGTGTCGTCGGCGGATACGACGCCCAGCTGCACGCCGGAGAAGGCGGA
GAAGAGCGTGTGTGTACATGACGCGGCGGCGATGATGTTGTTCCCCAACG
ACTTGACGCTGCCCGCGCCGTACCTCAAGGAGGAGATGGAGCTGTTTGGC
GACAGCTGTTCGGCCATGTGCGCGGACGTGTTGCTGGCGGACATGGGTGC
GGCGGCGGGTGGCAACGAGCTGATGGGGTCGGGGATGGCGGGCGAGTCGC
TGCTGCAGTCGCAGTGGGGGGGGTCGATTCTGTCATCGCCGCTGTTTGGC
GACAACTCGGCGGCGGCGGCGGCGGCGGCGATGAATGTAGGGGCGCAGCC
GCTGGGGCTGGGCACGGGGTTGATGGACGGCGGTCAGGCGTTCGGCATGG
GGATGGGGATGGGAATGGGGATGGGGATGGGGATGGGAATGGGGATGGGG
ATGGGGATGGGGATGGGGAGCATTGTGCCTTCGGCGGCGGATGACTTGGA
ACAAATATTGTCAAGAGATCACGGATGCGTGCTTGACCAATCGACGATAG
ACTCACTAACATGCGAAGAACAACTGTAA
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protein sequence of Ggra8967.t1

>Ggra8967.t1 ID=Ggra8967.t1|Name=Ggra8967.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=443bp
MNASTDSRCSTLHTRSSSPTPSLNPTWESRYEELLRWRAEHGDTCVPKAE
GALGRWVARQRELKRTGKLDGTREQALNSINFVWNTVTAMWEERFRKLSE
WKKQHGHCAVPIAQGELGTWVSKQRQLRKRGKLSKEKIDALDSLKFTWST
AEADWEDKFKRLVEWTRERGHASVPFNEGELGWWVNTQRQCKRKGKLSAS
REARLQSLGFVWNPSNSRSRAANAAAAATAAAAAAAAAAAAAATATATSN
TVSSADTTPSCTPEKAEKSVCVHDAAAMMLFPNDLTLPAPYLKEEMELFG
DSCSAMCADVLLADMGAAAGGNELMGSGMAGESLLQSQWGGSILSSPLFG
DNSAAAAAAAMNVGAQPLGLGTGLMDGGQAFGMGMGMGMGMGMGMGMGMG
MGMGMGSIVPSAADDLEQILSRDHGCVLDQSTIDSLTCEEQL*
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mRNA from alignment at tig00000860_pilon:990444..991878-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8967.t1 ID=Ggra8967.t1|Name=Ggra8967.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1435bp|location=Sequence derived from alignment at tig00000860_pilon:990444..991878- (Gracilaria gracilis GNS1m male)
ATGAACGCTTCCACCGACTCTCGCTGCTCTACGCTGCACACGCGCTCAAG
CTCGCCGACGCCATCGCTGAATCCGACGTGGGAGTCGCGCTATGAGGAGC
TTTTGAGATGGCGCGCCGAGCACGGCGACACGTGCGTGCCCAAGGCGGAG
GGCGCGCTCGGTCGATGGGTGGCACGTCAGCGCGAGCTGAAGAGAACCGG
CAGTAAGTTTAGCGTTTTTTATTTTTACCGCTCTCCCTATCCATATATAT
ATATATATATATATATACACTGGCTAACAGCAGGTTGTTGTGACAATGTG
TACAATAGAACTGGATGGCACGCGCGAACAGGCGCTCAACTCGATCAACT
TTGTGTGGAACACGGTGACGGCAATGTGGGAGGAGCGCTTCCGCAAGCTG
AGCGAGTGGAAGAAGCAGCACGGCCACTGCGCGGTGCCCATTGCGCAGGG
CGAGCTGGGCACGTGGGTGTCCAAGCAGCGGCAGCTGCGCAAGCGCGGCA
AGCTGTCCAAGGAGAAGATCGACGCGCTGGACAGCCTCAAGTTCACGTGG
AGCACGGCCGAGGCCGACTGGGAGGACAAGTTCAAGCGGCTGGTGGAGTG
GACGCGCGAACGCGGCCACGCCAGCGTGCCGTTCAACGAGGGCGAGCTCG
GCTGGTGGGTCAACACGCAGCGCCAGTGCAAGCGCAAGGGCAAGCTCAGC
GCGTCGCGCGAGGCGCGGCTGCAGTCGCTGGGCTTTGTGTGGAACCCGTC
CAACTCGCGGTCGCGCGCGGCCAATGCGGCGGCGGCGGCGACGGCGGCGG
CGGCGGCAGCAGCGGCGGCGGCAGCGGCGGCAGCGACGGCGACGGCGACG
AGTAACACGGTGTCGTCGGCGGATACGACGCCCAGCTGCACGCCGGAGAA
GGCGGAGAAGAGCGTGTGTGTACATGACGCGGCGGCGATGATGTTGTTCC
CCAACGACTTGACGCTGCCCGCGCCGTACCTCAAGGAGGAGATGGAGCTG
TTTGGCGACAGCTGTTCGGCCATGTGCGCGGACGTGTTGCTGGCGGACAT
GGGTGCGGCGGCGGGTGGCAACGAGCTGATGGGGTCGGGGATGGCGGGCG
AGTCGCTGCTGCAGTCGCAGTGGGGGGGGTCGATTCTGTCATCGCCGCTG
TTTGGCGACAACTCGGCGGCGGCGGCGGCGGCGGCGATGAATGTAGGGGC
GCAGCCGCTGGGGCTGGGCACGGGGTTGATGGACGGCGGTCAGGCGTTCG
GCATGGGGATGGGGATGGGAATGGGGATGGGGATGGGGATGGGAATGGGG
ATGGGGATGGGGATGGGGATGGGGAGCATTGTGCCTTCGGCGGCGGATGA
CTTGGAACAAATATTGTCAAGAGATCACGGATGCGTGCTTGACCAATCGA
CGATAGACTCACTAACATGCGAAGAACAACTGTAA
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Coding sequence (CDS) from alignment at tig00000860_pilon:990444..991878-

>Ggra8967.t1 ID=Ggra8967.t1|Name=Ggra8967.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1329bp|location=Sequence derived from alignment at tig00000860_pilon:990444..991878- (Gracilaria gracilis GNS1m male)
ATGAACGCTTCCACCGACTCTCGCTGCTCTACGCTGCACACGCGCTCAAG
CTCGCCGACGCCATCGCTGAATCCGACGTGGGAGTCGCGCTATGAGGAGC
TTTTGAGATGGCGCGCCGAGCACGGCGACACGTGCGTGCCCAAGGCGGAG
GGCGCGCTCGGTCGATGGGTGGCACGTCAGCGCGAGCTGAAGAGAACCGG
CAAACTGGATGGCACGCGCGAACAGGCGCTCAACTCGATCAACTTTGTGT
GGAACACGGTGACGGCAATGTGGGAGGAGCGCTTCCGCAAGCTGAGCGAG
TGGAAGAAGCAGCACGGCCACTGCGCGGTGCCCATTGCGCAGGGCGAGCT
GGGCACGTGGGTGTCCAAGCAGCGGCAGCTGCGCAAGCGCGGCAAGCTGT
CCAAGGAGAAGATCGACGCGCTGGACAGCCTCAAGTTCACGTGGAGCACG
GCCGAGGCCGACTGGGAGGACAAGTTCAAGCGGCTGGTGGAGTGGACGCG
CGAACGCGGCCACGCCAGCGTGCCGTTCAACGAGGGCGAGCTCGGCTGGT
GGGTCAACACGCAGCGCCAGTGCAAGCGCAAGGGCAAGCTCAGCGCGTCG
CGCGAGGCGCGGCTGCAGTCGCTGGGCTTTGTGTGGAACCCGTCCAACTC
GCGGTCGCGCGCGGCCAATGCGGCGGCGGCGGCGACGGCGGCGGCGGCGG
CAGCAGCGGCGGCGGCAGCGGCGGCAGCGACGGCGACGGCGACGAGTAAC
ACGGTGTCGTCGGCGGATACGACGCCCAGCTGCACGCCGGAGAAGGCGGA
GAAGAGCGTGTGTGTACATGACGCGGCGGCGATGATGTTGTTCCCCAACG
ACTTGACGCTGCCCGCGCCGTACCTCAAGGAGGAGATGGAGCTGTTTGGC
GACAGCTGTTCGGCCATGTGCGCGGACGTGTTGCTGGCGGACATGGGTGC
GGCGGCGGGTGGCAACGAGCTGATGGGGTCGGGGATGGCGGGCGAGTCGC
TGCTGCAGTCGCAGTGGGGGGGGTCGATTCTGTCATCGCCGCTGTTTGGC
GACAACTCGGCGGCGGCGGCGGCGGCGGCGATGAATGTAGGGGCGCAGCC
GCTGGGGCTGGGCACGGGGTTGATGGACGGCGGTCAGGCGTTCGGCATGG
GGATGGGGATGGGAATGGGGATGGGGATGGGGATGGGAATGGGGATGGGG
ATGGGGATGGGGATGGGGAGCATTGTGCCTTCGGCGGCGGATGACTTGGA
ACAAATATTGTCAAGAGATCACGGATGCGTGCTTGACCAATCGACGATAG
ACTCACTAACATGCGAAGAACAACTGTAA
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