Ggra8962.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8962.t1
Unique NameGgra8962.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length342
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:981974..982999 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706225.1
Max annot lvl130081.XP_005706225.1|-
KEGG koko:K09510
Evalue1.76e-87
EggNOG OGsCOG0484@1|root,KOG0714@2759|Eukaryota
Descriptionprotein folding
COG categoryO
BRITEko00000,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8962Ggra8962Gracilaria gracilis GNS1m malegenetig00000860_pilon 981974..982999 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8962.t1.stop1Ggra8962.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 981974..981976 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8962.t1.CDS1Ggra8962.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 981974..982999 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8962.t1.exon1Ggra8962.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 981974..982999 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8962.t1.start1Ggra8962.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 982997..982999 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8962.t1Ggra8962.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 981974..982999 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8962.t1 ID=Ggra8962.t1|Name=Ggra8962.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=342bp
MGRDYYSILGVSRGATPEELKKAYRRNAMKWHPDKNPDNKPEAEKKFQEI
AEAYQVLSDPKKKEIYDSYGEDALKAGMDEMPRSAPGTFRFNSASNMRDA
NDLFNEIFGSMGGFGGMGGMGGMGGMGGMGGMGGMGGPMGGFSSMGGGPQ
SFSSFSHGRASRKQPDTEVSLFLSLEELHNGVTKKLKITRNVARADGGVD
RAAKIHEVHIKPGYKAGTKIRYNGAGSEAPGYIPGDVVFIIQEKDHPKFK
RNGNNLEYKHRISLADALGGGTITIPGLDGRGYRLDCPEVINPGSEKTIS
GAGMPISKSPGQRGDLVVKFNVVFPTYLHPEKRERLRELLS*
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spliced messenger RNA

>Ggra8962.t1 ID=Ggra8962.t1|Name=Ggra8962.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1026bp|location=Sequence derived from alignment at tig00000860_pilon:981974..982999- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCAGGGATTATTACTCCATTCTGGGTGTCAGTCGCGGCGCTACGCC
AGAGGAACTCAAGAAAGCGTACCGTAGAAATGCTATGAAATGGCATCCAG
ACAAGAATCCAGACAATAAACCGGAGGCCGAGAAGAAGTTCCAGGAGATT
GCAGAGGCATACCAGGTGCTTTCCGATCCAAAGAAAAAGGAGATTTATGA
TAGCTACGGAGAGGATGCATTGAAGGCTGGCATGGATGAAATGCCTCGTA
GTGCGCCTGGTACATTCAGATTCAACTCTGCTTCCAACATGCGCGACGCT
AACGACCTTTTCAACGAGATTTTCGGCAGCATGGGCGGTTTTGGCGGAAT
GGGCGGAATGGGCGGCATGGGCGGCATGGGCGGCATGGGCGGAATGGGTG
GAATGGGTGGCCCCATGGGAGGCTTTAGCAGTATGGGAGGTGGTCCTCAA
AGCTTCTCCTCATTTTCACATGGCCGCGCTTCCCGGAAACAACCTGATAC
AGAGGTCTCTCTCTTTCTTTCTCTTGAAGAACTACACAACGGCGTCACGA
AAAAGCTCAAGATCACTCGAAATGTCGCACGTGCAGACGGTGGAGTCGAC
CGTGCTGCCAAAATTCATGAAGTACACATTAAACCTGGGTACAAAGCCGG
AACTAAGATTCGCTACAATGGAGCTGGAAGTGAAGCACCCGGCTATATCC
CAGGAGATGTAGTATTCATCATTCAAGAAAAAGATCATCCAAAGTTCAAA
AGGAATGGAAACAATCTTGAATACAAGCACCGCATATCGCTCGCAGATGC
TCTTGGTGGTGGCACAATAACTATTCCCGGGTTGGATGGAAGGGGATATC
GTCTTGACTGCCCTGAGGTCATCAATCCAGGCTCCGAAAAGACAATCTCT
GGAGCTGGTATGCCTATATCGAAGAGTCCTGGACAAAGGGGAGATCTTGT
AGTCAAGTTTAACGTTGTTTTCCCCACCTATCTGCACCCCGAAAAGCGAG
AACGATTGCGAGAACTTCTTTCGTAG
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protein sequence of Ggra8962.t1

>Ggra8962.t1 ID=Ggra8962.t1|Name=Ggra8962.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=342bp
MGRDYYSILGVSRGATPEELKKAYRRNAMKWHPDKNPDNKPEAEKKFQEI
AEAYQVLSDPKKKEIYDSYGEDALKAGMDEMPRSAPGTFRFNSASNMRDA
NDLFNEIFGSMGGFGGMGGMGGMGGMGGMGGMGGMGGPMGGFSSMGGGPQ
SFSSFSHGRASRKQPDTEVSLFLSLEELHNGVTKKLKITRNVARADGGVD
RAAKIHEVHIKPGYKAGTKIRYNGAGSEAPGYIPGDVVFIIQEKDHPKFK
RNGNNLEYKHRISLADALGGGTITIPGLDGRGYRLDCPEVINPGSEKTIS
GAGMPISKSPGQRGDLVVKFNVVFPTYLHPEKRERLRELLS*
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mRNA from alignment at tig00000860_pilon:981974..982999-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8962.t1 ID=Ggra8962.t1|Name=Ggra8962.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1026bp|location=Sequence derived from alignment at tig00000860_pilon:981974..982999- (Gracilaria gracilis GNS1m male)
ATGGGCAGGGATTATTACTCCATTCTGGGTGTCAGTCGCGGCGCTACGCC
AGAGGAACTCAAGAAAGCGTACCGTAGAAATGCTATGAAATGGCATCCAG
ACAAGAATCCAGACAATAAACCGGAGGCCGAGAAGAAGTTCCAGGAGATT
GCAGAGGCATACCAGGTGCTTTCCGATCCAAAGAAAAAGGAGATTTATGA
TAGCTACGGAGAGGATGCATTGAAGGCTGGCATGGATGAAATGCCTCGTA
GTGCGCCTGGTACATTCAGATTCAACTCTGCTTCCAACATGCGCGACGCT
AACGACCTTTTCAACGAGATTTTCGGCAGCATGGGCGGTTTTGGCGGAAT
GGGCGGAATGGGCGGCATGGGCGGCATGGGCGGCATGGGCGGAATGGGTG
GAATGGGTGGCCCCATGGGAGGCTTTAGCAGTATGGGAGGTGGTCCTCAA
AGCTTCTCCTCATTTTCACATGGCCGCGCTTCCCGGAAACAACCTGATAC
AGAGGTCTCTCTCTTTCTTTCTCTTGAAGAACTACACAACGGCGTCACGA
AAAAGCTCAAGATCACTCGAAATGTCGCACGTGCAGACGGTGGAGTCGAC
CGTGCTGCCAAAATTCATGAAGTACACATTAAACCTGGGTACAAAGCCGG
AACTAAGATTCGCTACAATGGAGCTGGAAGTGAAGCACCCGGCTATATCC
CAGGAGATGTAGTATTCATCATTCAAGAAAAAGATCATCCAAAGTTCAAA
AGGAATGGAAACAATCTTGAATACAAGCACCGCATATCGCTCGCAGATGC
TCTTGGTGGTGGCACAATAACTATTCCCGGGTTGGATGGAAGGGGATATC
GTCTTGACTGCCCTGAGGTCATCAATCCAGGCTCCGAAAAGACAATCTCT
GGAGCTGGTATGCCTATATCGAAGAGTCCTGGACAAAGGGGAGATCTTGT
AGTCAAGTTTAACGTTGTTTTCCCCACCTATCTGCACCCCGAAAAGCGAG
AACGATTGCGAGAACTTCTTTCGTAG
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Coding sequence (CDS) from alignment at tig00000860_pilon:981974..982999-

>Ggra8962.t1 ID=Ggra8962.t1|Name=Ggra8962.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1026bp|location=Sequence derived from alignment at tig00000860_pilon:981974..982999- (Gracilaria gracilis GNS1m male)
ATGGGCAGGGATTATTACTCCATTCTGGGTGTCAGTCGCGGCGCTACGCC
AGAGGAACTCAAGAAAGCGTACCGTAGAAATGCTATGAAATGGCATCCAG
ACAAGAATCCAGACAATAAACCGGAGGCCGAGAAGAAGTTCCAGGAGATT
GCAGAGGCATACCAGGTGCTTTCCGATCCAAAGAAAAAGGAGATTTATGA
TAGCTACGGAGAGGATGCATTGAAGGCTGGCATGGATGAAATGCCTCGTA
GTGCGCCTGGTACATTCAGATTCAACTCTGCTTCCAACATGCGCGACGCT
AACGACCTTTTCAACGAGATTTTCGGCAGCATGGGCGGTTTTGGCGGAAT
GGGCGGAATGGGCGGCATGGGCGGCATGGGCGGCATGGGCGGAATGGGTG
GAATGGGTGGCCCCATGGGAGGCTTTAGCAGTATGGGAGGTGGTCCTCAA
AGCTTCTCCTCATTTTCACATGGCCGCGCTTCCCGGAAACAACCTGATAC
AGAGGTCTCTCTCTTTCTTTCTCTTGAAGAACTACACAACGGCGTCACGA
AAAAGCTCAAGATCACTCGAAATGTCGCACGTGCAGACGGTGGAGTCGAC
CGTGCTGCCAAAATTCATGAAGTACACATTAAACCTGGGTACAAAGCCGG
AACTAAGATTCGCTACAATGGAGCTGGAAGTGAAGCACCCGGCTATATCC
CAGGAGATGTAGTATTCATCATTCAAGAAAAAGATCATCCAAAGTTCAAA
AGGAATGGAAACAATCTTGAATACAAGCACCGCATATCGCTCGCAGATGC
TCTTGGTGGTGGCACAATAACTATTCCCGGGTTGGATGGAAGGGGATATC
GTCTTGACTGCCCTGAGGTCATCAATCCAGGCTCCGAAAAGACAATCTCT
GGAGCTGGTATGCCTATATCGAAGAGTCCTGGACAAAGGGGAGATCTTGT
AGTCAAGTTTAACGTTGTTTTCCCCACCTATCTGCACCCCGAAAAGCGAG
AACGATTGCGAGAACTTCTTTCGTAG
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