Ggra8961.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8961.t1
Unique Name	Ggra8961.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	560

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000860_pilon	contig	tig00000860_pilon:980102..981781 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	7955.ENSDARP00000041370
Preferred name	POLI
PFAMs	IMS,IMS_C,IMS_HHH
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K03510
KEGG Pathway	ko03460,map03460
GOs	GO:0000731,GO:0003674,GO:0003824,GO:0003887,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009987,GO:0010225,GO:0016604,GO:0016607,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019985,GO:0031974,GO:0031981,GO:0032991,GO:0033554,GO:0034061,GO:0034641,GO:0034644,GO:0034645,GO:0034654,GO:0035770,GO:0036464,GO:0042276,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0070013,GO:0071214,GO:0071478,GO:0071482,GO:0071494,GO:0071704,GO:0071897,GO:0090304,GO:0104004,GO:0140097,GO:1901360,GO:1901362,GO:1901576,GO:1990904
Evalue	1.14e-47
EggNOG OGs	COG0389@1\|root,KOG2095@2759\|Eukaryota,38CM1@33154\|Opisthokonta,3BCX5@33208\|Metazoa,3CV7D@33213\|Bilateria,48CIW@7711\|Chordata,4917S@7742\|Vertebrata,4A17J@7898\|Actinopterygii
EC	2.7.7.7
Description	Polymerase (DNA directed) iota
COG category	L
BRITE	ko00000,ko00001,ko01000,ko03400

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8961	Ggra8961	Gracilaria gracilis GNS1m male	gene	tig00000860_pilon 980102..981781 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8961.t1.start1	Ggra8961.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000860_pilon 980102..980104 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8961.t1.CDS1	Ggra8961.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000860_pilon 980102..981781 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8961.t1.exon1	Ggra8961.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000860_pilon 980102..981781 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8961.t1.stop1	Ggra8961.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000860_pilon 981779..981781 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8961.t1	Ggra8961.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000860_pilon 980102..981781 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000860_pilon:980102..981781+
coding sequence from alignment at tig00000860_pilon:980102..981781+

mRNA sequence

>Ggra8961.t1 ID=Ggra8961.t1|Name=Ggra8961.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=560bp
MKRPRPTTARGIIALDLDCFYASVAIRARPHLKEKPVVIVQKHLCVTSNY
IARSRAKGAVQKMTPVSQALKKCPELVCIDGSDLTPFREASLEVLTVIRA
WLLERARTVSTALNSDPPVCPCQRLGFDEVFIDVTNLIEAQIEKGGAPFL
FKGNVFGMTENDEARRYLMVASQIAHDLRAHVIERTQLTLCAGISDSKQL
AKLAVNMHKPNDQTTFLPGKSAEYISTLSPRALMGFGHSTYEKIAAWTKE
HAKGTPIETVAHVLLLFGGLSGLRQLEDITGNENHARHLLDLCRGVDTTE
IVDSGDAPKSISAEDSCRNCDNMKDVNRRLTIQITRLVSRLRNDGILYSR
RPRTLTVSYRFRGDGFVGTTRSVPMPMEIVSVCCSRESRAISKAIEGIRR
TALDVLEEHAGVCTRNKFDLTLLAVGANNFTGIRATSGNGSIEDISKFFS
KPTGNDKDVPRKPVVLQSGSSLGPSLAGRLTSRREGTKDDTERTNDSESV
AEARCPICNTKLSGDNLKQNNHIDNCLKVVSLTQGNGSSKKRRKQSKVRT
VDSYFAKRS*

spliced messenger RNA

>Ggra8961.t1 ID=Ggra8961.t1|Name=Ggra8961.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1680bp|location=Sequence derived from alignment at tig00000860_pilon:980102..981781+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGAGACCACGCCCTACGACTGCCAGGGGAATCATTGCCCTCGACTT
GGATTGCTTCTATGCGTCTGTGGCCATACGGGCACGCCCGCACTTGAAAG
AAAAGCCAGTTGTAATTGTTCAGAAGCACTTGTGCGTAACTAGCAACTAC
ATTGCTCGGAGTCGGGCGAAAGGTGCAGTTCAGAAAATGACACCCGTCTC
TCAGGCTTTAAAGAAATGCCCTGAACTGGTTTGCATAGATGGATCTGACC
TTACCCCTTTTCGAGAAGCTAGTCTAGAGGTCCTCACTGTCATACGGGCA
TGGCTTCTTGAAAGGGCGAGAACTGTATCTACGGCCTTGAACAGTGACCC
TCCTGTGTGTCCTTGTCAAAGATTAGGATTTGATGAAGTGTTCATAGACG
TGACAAATCTGATCGAGGCACAGATTGAGAAAGGCGGAGCGCCATTTCTT
TTTAAAGGCAATGTGTTTGGAATGACAGAAAACGACGAAGCTCGGCGATA
TCTTATGGTTGCTTCGCAGATTGCTCATGATCTCAGAGCTCATGTTATTG
AACGAACCCAGCTCACACTATGTGCCGGTATAAGTGACTCGAAACAATTG
GCTAAACTTGCAGTAAACATGCACAAGCCCAATGACCAAACAACCTTCTT
GCCAGGAAAGTCAGCGGAATATATCAGCACGTTATCGCCCCGAGCACTCA
TGGGTTTCGGTCACAGCACTTACGAAAAGATTGCTGCATGGACAAAAGAA
CATGCTAAGGGTACGCCCATTGAAACTGTTGCACATGTTTTGCTGTTGTT
TGGAGGTCTGAGCGGTTTGCGACAACTTGAGGATATAACAGGGAATGAGA
ATCATGCTCGACATCTTCTTGATCTCTGTCGCGGTGTCGATACGACAGAA
ATAGTGGATAGCGGCGATGCACCAAAATCTATTTCGGCCGAGGATTCGTG
TCGGAACTGCGATAACATGAAAGATGTCAATCGACGTCTCACCATTCAAA
TCACTCGGTTGGTTTCCCGCCTCCGTAATGATGGAATACTGTATTCAAGA
AGACCAAGAACGCTAACCGTATCGTACAGATTTCGTGGAGATGGGTTTGT
TGGTACCACACGTTCTGTCCCAATGCCTATGGAAATCGTGTCCGTTTGTT
GTTCACGAGAGAGCAGAGCAATCTCAAAGGCAATAGAGGGAATACGACGA
ACAGCATTAGACGTTCTTGAAGAACATGCTGGAGTATGTACCAGAAATAA
GTTCGATCTAACTCTACTTGCAGTCGGTGCAAACAATTTTACAGGGATAC
GAGCTACCAGTGGAAACGGATCCATTGAAGACATATCGAAGTTCTTCTCT
AAACCTACAGGAAACGATAAGGACGTGCCTCGCAAACCAGTTGTTCTTCA
AAGCGGTTCTTCTTTGGGACCGTCACTTGCGGGAAGACTAACATCACGAC
GCGAAGGAACAAAAGACGACACCGAACGCACAAATGATTCAGAAAGCGTA
GCAGAGGCTAGGTGTCCAATCTGCAATACGAAGCTGTCCGGAGATAACTT
GAAGCAGAACAACCACATCGACAATTGTCTTAAAGTCGTTAGTCTTACCC
AAGGAAACGGCAGTTCGAAGAAACGTCGAAAGCAATCGAAGGTAAGAACA
GTTGACTCTTATTTTGCAAAGCGCTCATGA

protein sequence of Ggra8961.t1

>Ggra8961.t1 ID=Ggra8961.t1|Name=Ggra8961.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=560bp
MKRPRPTTARGIIALDLDCFYASVAIRARPHLKEKPVVIVQKHLCVTSNY
IARSRAKGAVQKMTPVSQALKKCPELVCIDGSDLTPFREASLEVLTVIRA
WLLERARTVSTALNSDPPVCPCQRLGFDEVFIDVTNLIEAQIEKGGAPFL
FKGNVFGMTENDEARRYLMVASQIAHDLRAHVIERTQLTLCAGISDSKQL
AKLAVNMHKPNDQTTFLPGKSAEYISTLSPRALMGFGHSTYEKIAAWTKE
HAKGTPIETVAHVLLLFGGLSGLRQLEDITGNENHARHLLDLCRGVDTTE
IVDSGDAPKSISAEDSCRNCDNMKDVNRRLTIQITRLVSRLRNDGILYSR
RPRTLTVSYRFRGDGFVGTTRSVPMPMEIVSVCCSRESRAISKAIEGIRR
TALDVLEEHAGVCTRNKFDLTLLAVGANNFTGIRATSGNGSIEDISKFFS
KPTGNDKDVPRKPVVLQSGSSLGPSLAGRLTSRREGTKDDTERTNDSESV
AEARCPICNTKLSGDNLKQNNHIDNCLKVVSLTQGNGSSKKRRKQSKVRT
VDSYFAKRS*

mRNA from alignment at tig00000860_pilon:980102..981781+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8961.t1 ID=Ggra8961.t1|Name=Ggra8961.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1680bp|location=Sequence derived from alignment at tig00000860_pilon:980102..981781+ (Gracilaria gracilis GNS1m male)
ATGAAGAGACCACGCCCTACGACTGCCAGGGGAATCATTGCCCTCGACTT
GGATTGCTTCTATGCGTCTGTGGCCATACGGGCACGCCCGCACTTGAAAG
AAAAGCCAGTTGTAATTGTTCAGAAGCACTTGTGCGTAACTAGCAACTAC
ATTGCTCGGAGTCGGGCGAAAGGTGCAGTTCAGAAAATGACACCCGTCTC
TCAGGCTTTAAAGAAATGCCCTGAACTGGTTTGCATAGATGGATCTGACC
TTACCCCTTTTCGAGAAGCTAGTCTAGAGGTCCTCACTGTCATACGGGCA
TGGCTTCTTGAAAGGGCGAGAACTGTATCTACGGCCTTGAACAGTGACCC
TCCTGTGTGTCCTTGTCAAAGATTAGGATTTGATGAAGTGTTCATAGACG
TGACAAATCTGATCGAGGCACAGATTGAGAAAGGCGGAGCGCCATTTCTT
TTTAAAGGCAATGTGTTTGGAATGACAGAAAACGACGAAGCTCGGCGATA
TCTTATGGTTGCTTCGCAGATTGCTCATGATCTCAGAGCTCATGTTATTG
AACGAACCCAGCTCACACTATGTGCCGGTATAAGTGACTCGAAACAATTG
GCTAAACTTGCAGTAAACATGCACAAGCCCAATGACCAAACAACCTTCTT
GCCAGGAAAGTCAGCGGAATATATCAGCACGTTATCGCCCCGAGCACTCA
TGGGTTTCGGTCACAGCACTTACGAAAAGATTGCTGCATGGACAAAAGAA
CATGCTAAGGGTACGCCCATTGAAACTGTTGCACATGTTTTGCTGTTGTT
TGGAGGTCTGAGCGGTTTGCGACAACTTGAGGATATAACAGGGAATGAGA
ATCATGCTCGACATCTTCTTGATCTCTGTCGCGGTGTCGATACGACAGAA
ATAGTGGATAGCGGCGATGCACCAAAATCTATTTCGGCCGAGGATTCGTG
TCGGAACTGCGATAACATGAAAGATGTCAATCGACGTCTCACCATTCAAA
TCACTCGGTTGGTTTCCCGCCTCCGTAATGATGGAATACTGTATTCAAGA
AGACCAAGAACGCTAACCGTATCGTACAGATTTCGTGGAGATGGGTTTGT
TGGTACCACACGTTCTGTCCCAATGCCTATGGAAATCGTGTCCGTTTGTT
GTTCACGAGAGAGCAGAGCAATCTCAAAGGCAATAGAGGGAATACGACGA
ACAGCATTAGACGTTCTTGAAGAACATGCTGGAGTATGTACCAGAAATAA
GTTCGATCTAACTCTACTTGCAGTCGGTGCAAACAATTTTACAGGGATAC
GAGCTACCAGTGGAAACGGATCCATTGAAGACATATCGAAGTTCTTCTCT
AAACCTACAGGAAACGATAAGGACGTGCCTCGCAAACCAGTTGTTCTTCA
AAGCGGTTCTTCTTTGGGACCGTCACTTGCGGGAAGACTAACATCACGAC
GCGAAGGAACAAAAGACGACACCGAACGCACAAATGATTCAGAAAGCGTA
GCAGAGGCTAGGTGTCCAATCTGCAATACGAAGCTGTCCGGAGATAACTT
GAAGCAGAACAACCACATCGACAATTGTCTTAAAGTCGTTAGTCTTACCC
AAGGAAACGGCAGTTCGAAGAAACGTCGAAAGCAATCGAAGGTAAGAACA
GTTGACTCTTATTTTGCAAAGCGCTCATGA

Coding sequence (CDS) from alignment at tig00000860_pilon:980102..981781+

>Ggra8961.t1 ID=Ggra8961.t1|Name=Ggra8961.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1680bp|location=Sequence derived from alignment at tig00000860_pilon:980102..981781+ (Gracilaria gracilis GNS1m male)
ATGAAGAGACCACGCCCTACGACTGCCAGGGGAATCATTGCCCTCGACTT
GGATTGCTTCTATGCGTCTGTGGCCATACGGGCACGCCCGCACTTGAAAG
AAAAGCCAGTTGTAATTGTTCAGAAGCACTTGTGCGTAACTAGCAACTAC
ATTGCTCGGAGTCGGGCGAAAGGTGCAGTTCAGAAAATGACACCCGTCTC
TCAGGCTTTAAAGAAATGCCCTGAACTGGTTTGCATAGATGGATCTGACC
TTACCCCTTTTCGAGAAGCTAGTCTAGAGGTCCTCACTGTCATACGGGCA
TGGCTTCTTGAAAGGGCGAGAACTGTATCTACGGCCTTGAACAGTGACCC
TCCTGTGTGTCCTTGTCAAAGATTAGGATTTGATGAAGTGTTCATAGACG
TGACAAATCTGATCGAGGCACAGATTGAGAAAGGCGGAGCGCCATTTCTT
TTTAAAGGCAATGTGTTTGGAATGACAGAAAACGACGAAGCTCGGCGATA
TCTTATGGTTGCTTCGCAGATTGCTCATGATCTCAGAGCTCATGTTATTG
AACGAACCCAGCTCACACTATGTGCCGGTATAAGTGACTCGAAACAATTG
GCTAAACTTGCAGTAAACATGCACAAGCCCAATGACCAAACAACCTTCTT
GCCAGGAAAGTCAGCGGAATATATCAGCACGTTATCGCCCCGAGCACTCA
TGGGTTTCGGTCACAGCACTTACGAAAAGATTGCTGCATGGACAAAAGAA
CATGCTAAGGGTACGCCCATTGAAACTGTTGCACATGTTTTGCTGTTGTT
TGGAGGTCTGAGCGGTTTGCGACAACTTGAGGATATAACAGGGAATGAGA
ATCATGCTCGACATCTTCTTGATCTCTGTCGCGGTGTCGATACGACAGAA
ATAGTGGATAGCGGCGATGCACCAAAATCTATTTCGGCCGAGGATTCGTG
TCGGAACTGCGATAACATGAAAGATGTCAATCGACGTCTCACCATTCAAA
TCACTCGGTTGGTTTCCCGCCTCCGTAATGATGGAATACTGTATTCAAGA
AGACCAAGAACGCTAACCGTATCGTACAGATTTCGTGGAGATGGGTTTGT
TGGTACCACACGTTCTGTCCCAATGCCTATGGAAATCGTGTCCGTTTGTT
GTTCACGAGAGAGCAGAGCAATCTCAAAGGCAATAGAGGGAATACGACGA
ACAGCATTAGACGTTCTTGAAGAACATGCTGGAGTATGTACCAGAAATAA
GTTCGATCTAACTCTACTTGCAGTCGGTGCAAACAATTTTACAGGGATAC
GAGCTACCAGTGGAAACGGATCCATTGAAGACATATCGAAGTTCTTCTCT
AAACCTACAGGAAACGATAAGGACGTGCCTCGCAAACCAGTTGTTCTTCA
AAGCGGTTCTTCTTTGGGACCGTCACTTGCGGGAAGACTAACATCACGAC
GCGAAGGAACAAAAGACGACACCGAACGCACAAATGATTCAGAAAGCGTA
GCAGAGGCTAGGTGTCCAATCTGCAATACGAAGCTGTCCGGAGATAACTT
GAAGCAGAACAACCACATCGACAATTGTCTTAAAGTCGTTAGTCTTACCC
AAGGAAACGGCAGTTCGAAGAAACGTCGAAAGCAATCGAAGGTAAGAACA
GTTGACTCTTATTTTGCAAAGCGCTCATGA