Ggra8958.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8958.t1
Unique NameGgra8958.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length400
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:972695..973894 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8958Ggra8958Gracilaria gracilis GNS1m malegenetig00000860_pilon 972695..973894 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8958.t1.start1Ggra8958.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 972695..972697 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8958.t1.CDS1Ggra8958.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 972695..973894 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8958.t1.exon1Ggra8958.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 972695..973894 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8958.t1.stop1Ggra8958.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 973892..973894 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8958.t1Ggra8958.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 972695..973894 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8958.t1 ID=Ggra8958.t1|Name=Ggra8958.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=400bp
MNKSIESGRWHFREALVKHQDGAETHTDSLASPTVQRDTGSDSRARRNLL
QRDMLPHSSSLRLNSLYPYIPKLTHSEFAAIGNPSASLSGQHEQSPCSLD
AQFSNILSPSHGVTPSLTLLSMAFFDQELKLLIDNNFRLSHVPRDESFLE
AVRISEQISCTLAQQHQEPLALKHIVPSGQESQFLTSLDVEPELDISNSS
TSLQWISDLQKFLGKVRTPVLANFQRRTYFNMSEHDERRAPTAMWHFDIA
NSSQHAEELTELSQAQSHVAYGTATDTRRYSSYYSNRGVHSSPGDTTVAL
NFGFQTRTNYPFRKTYRHSHKRGEVSHETRPISPAGDRSHDALCSAEFSA
QALIPACQGALPFNAIETGSTLRDASRAGDKAVVYSISEEGKLIGRKDK*
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spliced messenger RNA

>Ggra8958.t1 ID=Ggra8958.t1|Name=Ggra8958.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1200bp|location=Sequence derived from alignment at tig00000860_pilon:972695..973894+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACAAATCCATAGAATCGGGCAGGTGGCATTTTCGAGAGGCTTTGGT
TAAGCACCAGGACGGTGCTGAGACTCATACCGACTCCCTCGCTTCCCCAA
CAGTCCAACGAGACACCGGTTCTGATTCACGTGCTCGTAGGAATCTCTTG
CAGCGAGACATGCTACCTCACTCTTCAAGTCTCCGTCTCAATTCCTTGTA
TCCATATATTCCTAAACTTACCCATTCGGAGTTTGCAGCAATTGGTAATC
CCTCTGCGTCACTCTCGGGACAACACGAACAAAGCCCTTGCAGTCTAGAC
GCGCAGTTCTCAAACATCTTATCTCCTTCCCATGGAGTGACTCCGTCTCT
AACGCTCCTCAGTATGGCTTTTTTCGACCAGGAGTTGAAGCTACTCATCG
ACAACAATTTTCGTTTGTCACACGTTCCGAGAGACGAGTCTTTTCTTGAG
GCGGTCAGGATTTCTGAGCAGATTTCATGTACATTAGCGCAACAACACCA
AGAGCCCTTGGCTCTCAAGCACATCGTTCCCTCTGGCCAGGAGTCACAGT
TTCTGACCAGCTTAGATGTTGAACCCGAGCTTGATATCTCTAACTCATCA
ACTTCTCTCCAATGGATATCAGACCTTCAGAAATTTCTTGGAAAAGTTCG
GACCCCAGTGCTGGCTAATTTTCAACGCCGCACATACTTCAACATGTCTG
AGCATGATGAAAGACGTGCTCCGACAGCAATGTGGCACTTTGACATTGCT
AACTCCTCGCAACATGCGGAGGAACTAACAGAATTATCGCAAGCACAATC
TCACGTGGCATATGGAACAGCAACCGATACTCGAAGATACTCTTCTTATT
ACTCAAATCGGGGCGTTCATTCTTCACCCGGAGACACTACGGTGGCGCTC
AACTTTGGCTTCCAAACTCGAACTAACTATCCCTTTAGAAAGACGTACCG
ACACTCGCACAAACGTGGGGAAGTATCGCATGAAACGCGTCCGATCTCAC
CTGCAGGAGACCGATCTCACGATGCGTTATGCAGCGCCGAGTTCTCTGCT
CAGGCGTTGATTCCGGCTTGTCAAGGGGCTCTTCCCTTTAATGCAATCGA
AACTGGTAGCACTCTTCGTGATGCATCGAGAGCTGGCGATAAAGCTGTAG
TATACTCCATTAGCGAAGAAGGAAAGCTGATTGGCCGTAAAGACAAATGA
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protein sequence of Ggra8958.t1

>Ggra8958.t1 ID=Ggra8958.t1|Name=Ggra8958.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=400bp
MNKSIESGRWHFREALVKHQDGAETHTDSLASPTVQRDTGSDSRARRNLL
QRDMLPHSSSLRLNSLYPYIPKLTHSEFAAIGNPSASLSGQHEQSPCSLD
AQFSNILSPSHGVTPSLTLLSMAFFDQELKLLIDNNFRLSHVPRDESFLE
AVRISEQISCTLAQQHQEPLALKHIVPSGQESQFLTSLDVEPELDISNSS
TSLQWISDLQKFLGKVRTPVLANFQRRTYFNMSEHDERRAPTAMWHFDIA
NSSQHAEELTELSQAQSHVAYGTATDTRRYSSYYSNRGVHSSPGDTTVAL
NFGFQTRTNYPFRKTYRHSHKRGEVSHETRPISPAGDRSHDALCSAEFSA
QALIPACQGALPFNAIETGSTLRDASRAGDKAVVYSISEEGKLIGRKDK*
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mRNA from alignment at tig00000860_pilon:972695..973894+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8958.t1 ID=Ggra8958.t1|Name=Ggra8958.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1200bp|location=Sequence derived from alignment at tig00000860_pilon:972695..973894+ (Gracilaria gracilis GNS1m male)
ATGAACAAATCCATAGAATCGGGCAGGTGGCATTTTCGAGAGGCTTTGGT
TAAGCACCAGGACGGTGCTGAGACTCATACCGACTCCCTCGCTTCCCCAA
CAGTCCAACGAGACACCGGTTCTGATTCACGTGCTCGTAGGAATCTCTTG
CAGCGAGACATGCTACCTCACTCTTCAAGTCTCCGTCTCAATTCCTTGTA
TCCATATATTCCTAAACTTACCCATTCGGAGTTTGCAGCAATTGGTAATC
CCTCTGCGTCACTCTCGGGACAACACGAACAAAGCCCTTGCAGTCTAGAC
GCGCAGTTCTCAAACATCTTATCTCCTTCCCATGGAGTGACTCCGTCTCT
AACGCTCCTCAGTATGGCTTTTTTCGACCAGGAGTTGAAGCTACTCATCG
ACAACAATTTTCGTTTGTCACACGTTCCGAGAGACGAGTCTTTTCTTGAG
GCGGTCAGGATTTCTGAGCAGATTTCATGTACATTAGCGCAACAACACCA
AGAGCCCTTGGCTCTCAAGCACATCGTTCCCTCTGGCCAGGAGTCACAGT
TTCTGACCAGCTTAGATGTTGAACCCGAGCTTGATATCTCTAACTCATCA
ACTTCTCTCCAATGGATATCAGACCTTCAGAAATTTCTTGGAAAAGTTCG
GACCCCAGTGCTGGCTAATTTTCAACGCCGCACATACTTCAACATGTCTG
AGCATGATGAAAGACGTGCTCCGACAGCAATGTGGCACTTTGACATTGCT
AACTCCTCGCAACATGCGGAGGAACTAACAGAATTATCGCAAGCACAATC
TCACGTGGCATATGGAACAGCAACCGATACTCGAAGATACTCTTCTTATT
ACTCAAATCGGGGCGTTCATTCTTCACCCGGAGACACTACGGTGGCGCTC
AACTTTGGCTTCCAAACTCGAACTAACTATCCCTTTAGAAAGACGTACCG
ACACTCGCACAAACGTGGGGAAGTATCGCATGAAACGCGTCCGATCTCAC
CTGCAGGAGACCGATCTCACGATGCGTTATGCAGCGCCGAGTTCTCTGCT
CAGGCGTTGATTCCGGCTTGTCAAGGGGCTCTTCCCTTTAATGCAATCGA
AACTGGTAGCACTCTTCGTGATGCATCGAGAGCTGGCGATAAAGCTGTAG
TATACTCCATTAGCGAAGAAGGAAAGCTGATTGGCCGTAAAGACAAATGA
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Coding sequence (CDS) from alignment at tig00000860_pilon:972695..973894+

>Ggra8958.t1 ID=Ggra8958.t1|Name=Ggra8958.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1200bp|location=Sequence derived from alignment at tig00000860_pilon:972695..973894+ (Gracilaria gracilis GNS1m male)
ATGAACAAATCCATAGAATCGGGCAGGTGGCATTTTCGAGAGGCTTTGGT
TAAGCACCAGGACGGTGCTGAGACTCATACCGACTCCCTCGCTTCCCCAA
CAGTCCAACGAGACACCGGTTCTGATTCACGTGCTCGTAGGAATCTCTTG
CAGCGAGACATGCTACCTCACTCTTCAAGTCTCCGTCTCAATTCCTTGTA
TCCATATATTCCTAAACTTACCCATTCGGAGTTTGCAGCAATTGGTAATC
CCTCTGCGTCACTCTCGGGACAACACGAACAAAGCCCTTGCAGTCTAGAC
GCGCAGTTCTCAAACATCTTATCTCCTTCCCATGGAGTGACTCCGTCTCT
AACGCTCCTCAGTATGGCTTTTTTCGACCAGGAGTTGAAGCTACTCATCG
ACAACAATTTTCGTTTGTCACACGTTCCGAGAGACGAGTCTTTTCTTGAG
GCGGTCAGGATTTCTGAGCAGATTTCATGTACATTAGCGCAACAACACCA
AGAGCCCTTGGCTCTCAAGCACATCGTTCCCTCTGGCCAGGAGTCACAGT
TTCTGACCAGCTTAGATGTTGAACCCGAGCTTGATATCTCTAACTCATCA
ACTTCTCTCCAATGGATATCAGACCTTCAGAAATTTCTTGGAAAAGTTCG
GACCCCAGTGCTGGCTAATTTTCAACGCCGCACATACTTCAACATGTCTG
AGCATGATGAAAGACGTGCTCCGACAGCAATGTGGCACTTTGACATTGCT
AACTCCTCGCAACATGCGGAGGAACTAACAGAATTATCGCAAGCACAATC
TCACGTGGCATATGGAACAGCAACCGATACTCGAAGATACTCTTCTTATT
ACTCAAATCGGGGCGTTCATTCTTCACCCGGAGACACTACGGTGGCGCTC
AACTTTGGCTTCCAAACTCGAACTAACTATCCCTTTAGAAAGACGTACCG
ACACTCGCACAAACGTGGGGAAGTATCGCATGAAACGCGTCCGATCTCAC
CTGCAGGAGACCGATCTCACGATGCGTTATGCAGCGCCGAGTTCTCTGCT
CAGGCGTTGATTCCGGCTTGTCAAGGGGCTCTTCCCTTTAATGCAATCGA
AACTGGTAGCACTCTTCGTGATGCATCGAGAGCTGGCGATAAAGCTGTAG
TATACTCCATTAGCGAAGAAGGAAAGCTGATTGGCCGTAAAGACAAATGA
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