Ggra8957.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8957.t1
Unique NameGgra8957.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length167
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:969188..969688 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog88036.EFJ07410
Preferred nameGLB3
PFAMsBac_globin
Max annot lvl35493|Streptophyta
GOsGO:0001666,GO:0003674,GO:0005344,GO:0006810,GO:0006950,GO:0008150,GO:0009628,GO:0009719,GO:0009725,GO:0009733,GO:0010033,GO:0015669,GO:0015671,GO:0015893,GO:0036293,GO:0042221,GO:0042493,GO:0050896,GO:0051179,GO:0051234,GO:0070482,GO:0140104
Evalue7.21e-47
EggNOG OGsCOG2346@1|root,2QRXE@2759|Eukaryota,37PXR@33090|Viridiplantae,3GCEI@35493|Streptophyta
DescriptionTwo-on-two hemoglobin-3
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8957Ggra8957Gracilaria gracilis GNS1m malegenetig00000860_pilon 969188..969688 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8957.t1.start1Ggra8957.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 969188..969190 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8957.t1.CDS1Ggra8957.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 969188..969688 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8957.t1.exon1Ggra8957.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 969188..969688 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8957.t1.stop1Ggra8957.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 969686..969688 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8957.t1Ggra8957.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 969188..969688 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8957.t1 ID=Ggra8957.t1|Name=Ggra8957.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=167bp
MQELRQQATEQSGVPHSAVEEARAANLYQKLGWHTICALSHAFYTSVYED
EEWFRRLFANTTREAAMRNQREFLAQEFGGPPLYKERKGHTAILGRHGPY
AVDGRAAERWLEHMNAAVHAVVEDKELRVIMMRYFRHMAWYIVFGKRLVN
GMRTVGYYGKHTEGQV*
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spliced messenger RNA

>Ggra8957.t1 ID=Ggra8957.t1|Name=Ggra8957.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=501bp|location=Sequence derived from alignment at tig00000860_pilon:969188..969688+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAGAGCTTCGCCAACAAGCAACTGAGCAGAGCGGCGTACCGCATAG
CGCCGTCGAAGAAGCTCGCGCCGCCAATCTGTATCAAAAACTAGGTTGGC
ACACAATTTGCGCTCTTTCGCACGCGTTCTATACCAGCGTCTACGAAGAT
GAAGAGTGGTTTCGTCGTTTATTCGCGAACACGACCCGCGAGGCCGCGAT
GAGGAATCAGCGAGAGTTCTTGGCGCAAGAATTCGGTGGCCCGCCTCTGT
ATAAAGAACGAAAGGGTCATACTGCTATTCTTGGACGACACGGTCCGTAT
GCTGTGGATGGTCGTGCAGCGGAGCGCTGGTTAGAGCATATGAATGCTGC
AGTGCATGCTGTCGTTGAAGACAAGGAGCTTCGAGTGATTATGATGAGAT
ATTTTAGACACATGGCATGGTATATTGTGTTTGGTAAGCGGCTGGTAAAT
GGTATGAGGACAGTTGGCTACTACGGAAAGCATACTGAAGGTCAGGTTTA
A
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protein sequence of Ggra8957.t1

>Ggra8957.t1 ID=Ggra8957.t1|Name=Ggra8957.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=167bp
MQELRQQATEQSGVPHSAVEEARAANLYQKLGWHTICALSHAFYTSVYED
EEWFRRLFANTTREAAMRNQREFLAQEFGGPPLYKERKGHTAILGRHGPY
AVDGRAAERWLEHMNAAVHAVVEDKELRVIMMRYFRHMAWYIVFGKRLVN
GMRTVGYYGKHTEGQV*
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mRNA from alignment at tig00000860_pilon:969188..969688+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8957.t1 ID=Ggra8957.t1|Name=Ggra8957.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=501bp|location=Sequence derived from alignment at tig00000860_pilon:969188..969688+ (Gracilaria gracilis GNS1m male)
ATGCAAGAGCTTCGCCAACAAGCAACTGAGCAGAGCGGCGTACCGCATAG
CGCCGTCGAAGAAGCTCGCGCCGCCAATCTGTATCAAAAACTAGGTTGGC
ACACAATTTGCGCTCTTTCGCACGCGTTCTATACCAGCGTCTACGAAGAT
GAAGAGTGGTTTCGTCGTTTATTCGCGAACACGACCCGCGAGGCCGCGAT
GAGGAATCAGCGAGAGTTCTTGGCGCAAGAATTCGGTGGCCCGCCTCTGT
ATAAAGAACGAAAGGGTCATACTGCTATTCTTGGACGACACGGTCCGTAT
GCTGTGGATGGTCGTGCAGCGGAGCGCTGGTTAGAGCATATGAATGCTGC
AGTGCATGCTGTCGTTGAAGACAAGGAGCTTCGAGTGATTATGATGAGAT
ATTTTAGACACATGGCATGGTATATTGTGTTTGGTAAGCGGCTGGTAAAT
GGTATGAGGACAGTTGGCTACTACGGAAAGCATACTGAAGGTCAGGTTTA
A
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Coding sequence (CDS) from alignment at tig00000860_pilon:969188..969688+

>Ggra8957.t1 ID=Ggra8957.t1|Name=Ggra8957.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=501bp|location=Sequence derived from alignment at tig00000860_pilon:969188..969688+ (Gracilaria gracilis GNS1m male)
ATGCAAGAGCTTCGCCAACAAGCAACTGAGCAGAGCGGCGTACCGCATAG
CGCCGTCGAAGAAGCTCGCGCCGCCAATCTGTATCAAAAACTAGGTTGGC
ACACAATTTGCGCTCTTTCGCACGCGTTCTATACCAGCGTCTACGAAGAT
GAAGAGTGGTTTCGTCGTTTATTCGCGAACACGACCCGCGAGGCCGCGAT
GAGGAATCAGCGAGAGTTCTTGGCGCAAGAATTCGGTGGCCCGCCTCTGT
ATAAAGAACGAAAGGGTCATACTGCTATTCTTGGACGACACGGTCCGTAT
GCTGTGGATGGTCGTGCAGCGGAGCGCTGGTTAGAGCATATGAATGCTGC
AGTGCATGCTGTCGTTGAAGACAAGGAGCTTCGAGTGATTATGATGAGAT
ATTTTAGACACATGGCATGGTATATTGTGTTTGGTAAGCGGCTGGTAAAT
GGTATGAGGACAGTTGGCTACTACGGAAAGCATACTGAAGGTCAGGTTTA
A
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