Ggra8956.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8956.t1
Unique NameGgra8956.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length157
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:968287..968757 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8956Ggra8956Gracilaria gracilis GNS1m malegenetig00000860_pilon 968287..968757 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8956.t1.start1Ggra8956.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 968287..968289 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8956.t1.CDS1Ggra8956.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 968287..968757 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8956.t1.exon1Ggra8956.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 968287..968757 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8956.t1.stop1Ggra8956.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 968755..968757 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8956.t1Ggra8956.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 968287..968757 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8956.t1 ID=Ggra8956.t1|Name=Ggra8956.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=157bp
MSTFSACQTAFTQAAPVSGSCLQKTLRCVRRARPRVALMTLHPQDLSWRS
ERDRHAVESEFISIRLDGKVDADMAMLRERMQMLGQKEKQWADICHQFLS
FSMLTGLPLIDRDTGEPTFRAWILFSLSAAVPLYMVALVLNWFHTTSVSF
GSALPL*
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spliced messenger RNA

>Ggra8956.t1 ID=Ggra8956.t1|Name=Ggra8956.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=471bp|location=Sequence derived from alignment at tig00000860_pilon:968287..968757+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCACGTTTTCCGCCTGTCAGACCGCCTTCACGCAGGCGGCACCTGT
GTCCGGCTCCTGCTTGCAAAAGACGCTGCGGTGTGTGCGCAGGGCGCGGC
CGCGGGTGGCGCTTATGACGTTGCACCCGCAGGACCTTTCGTGGAGATCT
GAGCGTGATCGACATGCTGTTGAGAGCGAGTTTATCTCCATTCGGCTCGA
TGGCAAGGTGGATGCTGATATGGCCATGTTGAGAGAACGCATGCAAATGT
TGGGGCAGAAGGAGAAGCAATGGGCCGATATTTGTCATCAGTTCTTGTCA
TTTTCTATGCTTACGGGCCTTCCTCTGATTGACCGTGATACGGGAGAGCC
TACTTTCAGGGCTTGGATTCTGTTCTCGTTGTCTGCTGCTGTGCCGCTCT
ACATGGTGGCTTTGGTACTGAATTGGTTTCACACTACGTCTGTGTCGTTT
GGAAGCGCGCTGCCTTTATAG
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protein sequence of Ggra8956.t1

>Ggra8956.t1 ID=Ggra8956.t1|Name=Ggra8956.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=157bp
MSTFSACQTAFTQAAPVSGSCLQKTLRCVRRARPRVALMTLHPQDLSWRS
ERDRHAVESEFISIRLDGKVDADMAMLRERMQMLGQKEKQWADICHQFLS
FSMLTGLPLIDRDTGEPTFRAWILFSLSAAVPLYMVALVLNWFHTTSVSF
GSALPL*
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mRNA from alignment at tig00000860_pilon:968287..968757+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8956.t1 ID=Ggra8956.t1|Name=Ggra8956.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=471bp|location=Sequence derived from alignment at tig00000860_pilon:968287..968757+ (Gracilaria gracilis GNS1m male)
ATGAGCACGTTTTCCGCCTGTCAGACCGCCTTCACGCAGGCGGCACCTGT
GTCCGGCTCCTGCTTGCAAAAGACGCTGCGGTGTGTGCGCAGGGCGCGGC
CGCGGGTGGCGCTTATGACGTTGCACCCGCAGGACCTTTCGTGGAGATCT
GAGCGTGATCGACATGCTGTTGAGAGCGAGTTTATCTCCATTCGGCTCGA
TGGCAAGGTGGATGCTGATATGGCCATGTTGAGAGAACGCATGCAAATGT
TGGGGCAGAAGGAGAAGCAATGGGCCGATATTTGTCATCAGTTCTTGTCA
TTTTCTATGCTTACGGGCCTTCCTCTGATTGACCGTGATACGGGAGAGCC
TACTTTCAGGGCTTGGATTCTGTTCTCGTTGTCTGCTGCTGTGCCGCTCT
ACATGGTGGCTTTGGTACTGAATTGGTTTCACACTACGTCTGTGTCGTTT
GGAAGCGCGCTGCCTTTATAG
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Coding sequence (CDS) from alignment at tig00000860_pilon:968287..968757+

>Ggra8956.t1 ID=Ggra8956.t1|Name=Ggra8956.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=471bp|location=Sequence derived from alignment at tig00000860_pilon:968287..968757+ (Gracilaria gracilis GNS1m male)
ATGAGCACGTTTTCCGCCTGTCAGACCGCCTTCACGCAGGCGGCACCTGT
GTCCGGCTCCTGCTTGCAAAAGACGCTGCGGTGTGTGCGCAGGGCGCGGC
CGCGGGTGGCGCTTATGACGTTGCACCCGCAGGACCTTTCGTGGAGATCT
GAGCGTGATCGACATGCTGTTGAGAGCGAGTTTATCTCCATTCGGCTCGA
TGGCAAGGTGGATGCTGATATGGCCATGTTGAGAGAACGCATGCAAATGT
TGGGGCAGAAGGAGAAGCAATGGGCCGATATTTGTCATCAGTTCTTGTCA
TTTTCTATGCTTACGGGCCTTCCTCTGATTGACCGTGATACGGGAGAGCC
TACTTTCAGGGCTTGGATTCTGTTCTCGTTGTCTGCTGCTGTGCCGCTCT
ACATGGTGGCTTTGGTACTGAATTGGTTTCACACTACGTCTGTGTCGTTT
GGAAGCGCGCTGCCTTTATAG
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