Ggra8953.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8953.t1
Unique NameGgra8953.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length382
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:962441..963942 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4538.ORGLA08G0028100.1
Preferred nameSPO11-2
PFAMsTP6A_N
Max annot lvl35493|Streptophyta
KEGG koko:K10878
KEGG Pathwayko04113,map04113
GOsGO:0000003,GO:0000228,GO:0000280,GO:0000706,GO:0000729,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003916,GO:0003918,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007127,GO:0007129,GO:0007131,GO:0007275,GO:0008094,GO:0008150,GO:0008152,GO:0009553,GO:0009555,GO:0009791,GO:0009987,GO:0010154,GO:0016043,GO:0016462,GO:0016787,GO:0016788,GO:0016817,GO:0016818,GO:0016853,GO:0016887,GO:0016889,GO:0016894,GO:0017111,GO:0022402,GO:0022414,GO:0022607,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0033554,GO:0034641,GO:0035825,GO:0042138,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045132,GO:0045143,GO:0046483,GO:0048229,GO:0048285,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0051026,GO:0051276,GO:0051321,GO:0051716,GO:0061458,GO:0061505,GO:0061982,GO:0070013,GO:0070192,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0097159,GO:0098813,GO:0140013,GO:0140097,GO:1901360,GO:1901363,GO:1903046
Evalue8.71e-53
EggNOG OGsCOG1697@1|root,KOG2795@2759|Eukaryota,37IVC@33090|Viridiplantae,3GC1K@35493|Streptophyta,3KMV8@4447|Liliopsida,3I4DS@38820|Poales
DescriptionType IIB DNA topoisomerase
COG categoryL
BRITEko00000,ko00001,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8953Ggra8953Gracilaria gracilis GNS1m malegenetig00000860_pilon 962441..963942 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8953.t1Ggra8953.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 962441..963942 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8953.t1.start1Ggra8953.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 962441..962443 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8953.t1.CDS1Ggra8953.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 962441..962986 +
Ggra8953.t1.CDS2Ggra8953.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000860_pilon 963082..963157 +
Ggra8953.t1.CDS3Ggra8953.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000860_pilon 963244..963382 +
Ggra8953.t1.CDS4Ggra8953.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000860_pilon 963489..963592 +
Ggra8953.t1.CDS5Ggra8953.t1.CDS5Gracilaria gracilis GNS1m maleCDStig00000860_pilon 963662..963942 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8953.t1.exon1Ggra8953.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 962441..962986 +
Ggra8953.t1.exon2Ggra8953.t1.exon2Gracilaria gracilis GNS1m maleexontig00000860_pilon 963082..963157 +
Ggra8953.t1.exon3Ggra8953.t1.exon3Gracilaria gracilis GNS1m maleexontig00000860_pilon 963244..963382 +
Ggra8953.t1.exon4Ggra8953.t1.exon4Gracilaria gracilis GNS1m maleexontig00000860_pilon 963489..963592 +
Ggra8953.t1.exon5Ggra8953.t1.exon5Gracilaria gracilis GNS1m maleexontig00000860_pilon 963662..963942 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8953.t1.intron1Ggra8953.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000860_pilon 962987..963081 +
Ggra8953.t1.intron2Ggra8953.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000860_pilon 963158..963243 +
Ggra8953.t1.intron3Ggra8953.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000860_pilon 963383..963488 +
Ggra8953.t1.intron4Ggra8953.t1.intron4Gracilaria gracilis GNS1m maleintrontig00000860_pilon 963593..963661 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8953.t1.stop1Ggra8953.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 963940..963942 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8953.t1 ID=Ggra8953.t1|Name=Ggra8953.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=382bp
MNPVPQRQPSFLAAAGILPLQARHEEHPSVILERIESLALNFAYDITTDR
ADGVFKMVSRTYANFVQDEQTGALLFGGKTTIRRFNKRTALSVSRMLQVM
SAVQRLLLSGRRISQRELFYRLISSFDSQAQLNMMILDVSALLRAPRYAL
HIGAATRGVVAGKLNVALSGSSYKIDCEHVGPNGWPIPGDVLVAMSVVVA
SSASYILVIEKFGIFTRLVQDRIYDKLPCILVCGKGYPSVATRAMTSLLA
SRLRIPVLGLADFNPHGACLLQCYRSGSARSGVEGSQFMCNLRWLGLRSP
HISKYSYIGLSGEAPTARDLAIIRGLQRNHSVFRENERYAHELNAMKHLG
KYELQWLYGHSSGTDFLQDFVIESILHGDYL*
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spliced messenger RNA

>Ggra8953.t1 ID=Ggra8953.t1|Name=Ggra8953.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1146bp|location=Sequence derived from alignment at tig00000860_pilon:962441..963942+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATCCTGTGCCACAACGTCAGCCATCATTTCTAGCAGCTGCAGGGAT
CTTACCGCTTCAGGCCAGGCATGAGGAACACCCCAGCGTGATCCTAGAGA
GGATCGAGTCCCTTGCGTTGAATTTTGCTTATGATATCACAACCGACAGA
GCGGATGGCGTTTTCAAAATGGTGAGCAGGACGTATGCAAACTTCGTTCA
GGACGAACAAACAGGCGCTCTCCTGTTCGGGGGGAAGACGACTATTCGCA
GGTTTAACAAACGAACGGCGTTATCTGTTTCGCGAATGCTGCAAGTCATG
TCTGCCGTTCAAAGATTGCTCCTCAGCGGACGGCGAATTTCACAACGAGA
ACTGTTCTATAGGCTGATTTCCTCGTTCGACTCGCAGGCACAGTTAAACA
TGATGATCCTTGACGTCTCGGCTTTGCTTCGGGCGCCAAGGTACGCCCTC
CATATTGGGGCTGCCACTCGCGGGGTCGTTGCGGGAAAACTCAATGTTGC
CTTGTCGGGTTCTTCGTACAAAATCGATTGCGAACATGTCGGACCTAATG
GTTGGCCGATTCCGGGCGATGTCCTTGTCGCAATGTCGGTGGTTGTAGCT
TCATCTGCGAGTTACATCTTAGTGATCGAGAAGTTTGGTATATTCACAAG
ACTTGTGCAGGATAGGATTTACGACAAGCTTCCTTGCATCTTAGTGTGTG
GGAAAGGATACCCTTCTGTTGCTACTCGAGCAATGACTTCGCTTTTGGCA
TCCAGGCTTCGAATTCCGGTACTCGGTCTGGCTGATTTCAACCCACATGG
CGCTTGTTTATTGCAGTGCTATCGTAGTGGGAGTGCAAGGTCAGGCGTCG
AAGGCTCCCAATTCATGTGCAACTTGCGCTGGCTTGGGCTTAGATCACCT
CATATATCGAAATATTCCTACATTGGTCTTAGCGGTGAAGCACCTACTGC
AAGAGATCTGGCTATAATCCGAGGCCTGCAGCGCAATCACAGTGTCTTCC
GCGAGAATGAACGATACGCTCACGAGTTAAACGCCATGAAGCACCTCGGG
AAGTATGAGTTGCAATGGCTATATGGACATTCTTCTGGAACAGACTTCCT
CCAAGACTTTGTTATAGAATCCATACTTCACGGTGATTATCTTTAG
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protein sequence of Ggra8953.t1

>Ggra8953.t1 ID=Ggra8953.t1|Name=Ggra8953.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=382bp
MNPVPQRQPSFLAAAGILPLQARHEEHPSVILERIESLALNFAYDITTDR
ADGVFKMVSRTYANFVQDEQTGALLFGGKTTIRRFNKRTALSVSRMLQVM
SAVQRLLLSGRRISQRELFYRLISSFDSQAQLNMMILDVSALLRAPRYAL
HIGAATRGVVAGKLNVALSGSSYKIDCEHVGPNGWPIPGDVLVAMSVVVA
SSASYILVIEKFGIFTRLVQDRIYDKLPCILVCGKGYPSVATRAMTSLLA
SRLRIPVLGLADFNPHGACLLQCYRSGSARSGVEGSQFMCNLRWLGLRSP
HISKYSYIGLSGEAPTARDLAIIRGLQRNHSVFRENERYAHELNAMKHLG
KYELQWLYGHSSGTDFLQDFVIESILHGDYL*
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mRNA from alignment at tig00000860_pilon:962441..963942+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8953.t1 ID=Ggra8953.t1|Name=Ggra8953.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1502bp|location=Sequence derived from alignment at tig00000860_pilon:962441..963942+ (Gracilaria gracilis GNS1m male)
ATGAATCCTGTGCCACAACGTCAGCCATCATTTCTAGCAGCTGCAGGGAT
CTTACCGCTTCAGGCCAGGCATGAGGAACACCCCAGCGTGATCCTAGAGA
GGATCGAGTCCCTTGCGTTGAATTTTGCTTATGATATCACAACCGACAGA
GCGGATGGCGTTTTCAAAATGGTGAGCAGGACGTATGCAAACTTCGTTCA
GGACGAACAAACAGGCGCTCTCCTGTTCGGGGGGAAGACGACTATTCGCA
GGTTTAACAAACGAACGGCGTTATCTGTTTCGCGAATGCTGCAAGTCATG
TCTGCCGTTCAAAGATTGCTCCTCAGCGGACGGCGAATTTCACAACGAGA
ACTGTTCTATAGGCTGATTTCCTCGTTCGACTCGCAGGCACAGTTAAACA
TGATGATCCTTGACGTCTCGGCTTTGCTTCGGGCGCCAAGGTACGCCCTC
CATATTGGGGCTGCCACTCGCGGGGTCGTTGCGGGAAAACTCAATGTTGC
CTTGTCGGGTTCTTCGTACAAAATCGATTGCGAACATGTCGGACCTGTAA
GTTGCTTCCTCTGGCACAACTGCGTGTACTAAATTTCTTAACCCCGTAGC
GCTTAGACTTGCTAATGGCAGCGTGTTCTTCGTCTCCTCAGAATGGTTGG
CCGATTCCGGGCGATGTCCTTGTCGCAATGTCGGTGGTTGTAGCTTCATC
TGCGAGTTACATCTTAGGTACGTTTCGAAAGAGTGAAGAGCTGTGATTGT
TTTGGAACGCAAGTGGTAGAAATTGATATTGACAAGATTCGCATGTGTTC
CAGTGATCGAGAAGTTTGGTATATTCACAAGACTTGTGCAGGATAGGATT
TACGACAAGCTTCCTTGCATCTTAGTGTGTGGGAAAGGATACCCTTCTGT
TGCTACTCGAGCAATGACTTCGCTTTTGGCATCCAGGCTTCGGTAAGCAA
ACTGAAACTTTGTCTCATGGGCACAACGTTTCCGCACAAGCTTGCGATAG
ACGAGTGTCATGTTCAATGTCCTGGCATATAACTAACCGACGCCATAGAA
TTCCGGTACTCGGTCTGGCTGATTTCAACCCACATGGCGCTTGTTTATTG
CAGTGCTATCGTAGTGGGAGTGCAAGGTCAGGCGTCGAAGGCTCCCAATT
CAGTAGGTTATCTTCCAAAGTCTTTTGCTCATTGTGATTCTTCAGCTAGA
TTCTTACCATTCTTCGTTAAGTGTGCAACTTGCGCTGGCTTGGGCTTAGA
TCACCTCATATATCGAAATATTCCTACATTGGTCTTAGCGGTGAAGCACC
TACTGCAAGAGATCTGGCTATAATCCGAGGCCTGCAGCGCAATCACAGTG
TCTTCCGCGAGAATGAACGATACGCTCACGAGTTAAACGCCATGAAGCAC
CTCGGGAAGTATGAGTTGCAATGGCTATATGGACATTCTTCTGGAACAGA
CTTCCTCCAAGACTTTGTTATAGAATCCATACTTCACGGTGATTATCTTT
AG
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Coding sequence (CDS) from alignment at tig00000860_pilon:962441..963942+

>Ggra8953.t1 ID=Ggra8953.t1|Name=Ggra8953.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1146bp|location=Sequence derived from alignment at tig00000860_pilon:962441..963942+ (Gracilaria gracilis GNS1m male)
ATGAATCCTGTGCCACAACGTCAGCCATCATTTCTAGCAGCTGCAGGGAT
CTTACCGCTTCAGGCCAGGCATGAGGAACACCCCAGCGTGATCCTAGAGA
GGATCGAGTCCCTTGCGTTGAATTTTGCTTATGATATCACAACCGACAGA
GCGGATGGCGTTTTCAAAATGGTGAGCAGGACGTATGCAAACTTCGTTCA
GGACGAACAAACAGGCGCTCTCCTGTTCGGGGGGAAGACGACTATTCGCA
GGTTTAACAAACGAACGGCGTTATCTGTTTCGCGAATGCTGCAAGTCATG
TCTGCCGTTCAAAGATTGCTCCTCAGCGGACGGCGAATTTCACAACGAGA
ACTGTTCTATAGGCTGATTTCCTCGTTCGACTCGCAGGCACAGTTAAACA
TGATGATCCTTGACGTCTCGGCTTTGCTTCGGGCGCCAAGGTACGCCCTC
CATATTGGGGCTGCCACTCGCGGGGTCGTTGCGGGAAAACTCAATGTTGC
CTTGTCGGGTTCTTCGTACAAAATCGATTGCGAACATGTCGGACCTAATG
GTTGGCCGATTCCGGGCGATGTCCTTGTCGCAATGTCGGTGGTTGTAGCT
TCATCTGCGAGTTACATCTTAGTGATCGAGAAGTTTGGTATATTCACAAG
ACTTGTGCAGGATAGGATTTACGACAAGCTTCCTTGCATCTTAGTGTGTG
GGAAAGGATACCCTTCTGTTGCTACTCGAGCAATGACTTCGCTTTTGGCA
TCCAGGCTTCGAATTCCGGTACTCGGTCTGGCTGATTTCAACCCACATGG
CGCTTGTTTATTGCAGTGCTATCGTAGTGGGAGTGCAAGGTCAGGCGTCG
AAGGCTCCCAATTCATGTGCAACTTGCGCTGGCTTGGGCTTAGATCACCT
CATATATCGAAATATTCCTACATTGGTCTTAGCGGTGAAGCACCTACTGC
AAGAGATCTGGCTATAATCCGAGGCCTGCAGCGCAATCACAGTGTCTTCC
GCGAGAATGAACGATACGCTCACGAGTTAAACGCCATGAAGCACCTCGGG
AAGTATGAGTTGCAATGGCTATATGGACATTCTTCTGGAACAGACTTCCT
CCAAGACTTTGTTATAGAATCCATACTTCACGGTGATTATCTTTAG
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