Ggra8951.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8951.t1
Unique NameGgra8951.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length462
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:957213..958598 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1056512.D515_01378
PFAMsFG-GAP_2
Max annot lvl135623|Vibrionales
Evalue3.46e-27
EggNOG OGsCOG2304@1|root,COG2304@2|Bacteria,1PDQV@1224|Proteobacteria,1RPGD@1236|Gammaproteobacteria,1XYT2@135623|Vibrionales
DescriptionIntegrin alpha (beta-propellor repeats).
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8951Ggra8951Gracilaria gracilis GNS1m malegenetig00000860_pilon 957213..958598 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8951.t1.start1Ggra8951.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 957213..957215 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8951.t1.CDS1Ggra8951.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 957213..958598 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8951.t1.exon1Ggra8951.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 957213..958598 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8951.t1.stop1Ggra8951.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 958596..958598 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8951.t1Ggra8951.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 957213..958598 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8951.t1 ID=Ggra8951.t1|Name=Ggra8951.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=462bp
MHYVIASLLLLSLSALACAGRLFVQPPTQDRTNKLKFGQSTCISQDGMRI
LVGANGYDRYRGALYIYDLVTAPGDHVHHWQRTTLSANGTEQAEDKKHEL
RVLPRGSAFGFSCSMSADARRLVVGAPGHDTQRGAVFVFAYSASQSRWVE
VQRLSTHDARSGDSFGWAVVVNHDCTVLATSARGKKANNGEVFAYDCEKG
CTKCELVSRINAPDYTDKTGPRGIRIRNNFGTSMSMNAKGDVLVVSSIGY
DDERGAVYIFRRAARGEEWQLAQRVTSPKAQQRGFFGYRLAMDHDANHIV
IGADGEDEYTGAVYVFHKNRNEYEFAYEINAEEAEEEDNFGASIAMSGNG
HTLIVGAPGANRGRLKDHGLVYVYEKVKGEKKDGWALAETVSLPVEHSSQ
GNYFGWNVDISANGRKYVSSAPESYGGSGLVAFGDFDVSGRSMMNSASLI
HDEIESGKEEL*
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spliced messenger RNA

>Ggra8951.t1 ID=Ggra8951.t1|Name=Ggra8951.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1386bp|location=Sequence derived from alignment at tig00000860_pilon:957213..958598+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATTACGTGATTGCTTCGCTTCTGCTGCTTTCGCTCAGCGCCCTGGC
CTGTGCCGGGCGTCTGTTCGTGCAGCCGCCCACTCAAGATCGTACCAACA
AGCTGAAGTTCGGCCAGAGTACTTGTATCAGTCAGGATGGAATGCGCATT
CTGGTCGGTGCGAACGGGTACGATCGGTATAGAGGCGCTCTGTATATCTA
CGACCTCGTCACAGCGCCCGGTGATCATGTGCATCATTGGCAGCGCACCA
CGCTGTCTGCAAACGGAACAGAGCAGGCTGAAGACAAGAAGCATGAATTG
AGAGTGCTTCCAAGGGGAAGCGCGTTCGGCTTTTCTTGTTCAATGTCTGC
TGATGCGCGGAGGTTAGTCGTCGGAGCTCCTGGACATGATACACAACGCG
GTGCTGTGTTCGTGTTCGCGTATTCGGCATCACAGAGTAGATGGGTCGAA
GTGCAACGTCTCAGCACGCATGATGCGCGATCTGGCGACTCTTTTGGATG
GGCTGTGGTTGTGAATCATGACTGTACAGTATTGGCGACCAGTGCGAGAG
GGAAGAAGGCTAACAATGGAGAAGTGTTCGCCTATGATTGCGAGAAGGGG
TGTACGAAATGTGAACTAGTTTCTCGTATCAATGCGCCGGATTACACGGA
TAAAACTGGGCCGCGTGGGATCCGCATTCGAAATAACTTTGGCACCAGTA
TGAGCATGAACGCAAAAGGGGATGTGTTGGTGGTGAGCAGCATCGGCTAT
GACGATGAACGAGGAGCTGTTTATATTTTTAGACGGGCGGCTCGAGGTGA
GGAGTGGCAATTGGCGCAGCGCGTGACTTCGCCAAAGGCACAGCAACGTG
GATTCTTTGGGTACCGGCTTGCTATGGACCACGATGCAAATCACATTGTC
ATCGGAGCGGATGGGGAAGATGAGTATACCGGTGCCGTGTATGTGTTTCA
CAAGAACAGGAACGAGTACGAATTCGCATATGAGATCAATGCAGAAGAGG
CTGAAGAGGAGGACAACTTTGGGGCATCGATTGCAATGTCAGGGAATGGG
CACACGTTGATTGTTGGTGCACCGGGTGCCAACCGAGGCAGGTTGAAGGA
TCATGGATTGGTGTATGTGTACGAAAAAGTGAAGGGAGAGAAGAAGGACG
GATGGGCGCTGGCCGAAACAGTGTCATTGCCAGTAGAACACTCATCGCAG
GGCAACTATTTCGGATGGAATGTGGATATTAGCGCAAATGGAAGGAAGTA
TGTTAGTAGCGCACCCGAATCATACGGCGGCAGCGGACTTGTTGCGTTCG
GAGACTTTGATGTTTCCGGAAGAAGTATGATGAATTCTGCGTCGCTGATT
CATGACGAGATTGAGTCTGGGAAGGAGGAACTGTAA
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protein sequence of Ggra8951.t1

>Ggra8951.t1 ID=Ggra8951.t1|Name=Ggra8951.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=462bp
MHYVIASLLLLSLSALACAGRLFVQPPTQDRTNKLKFGQSTCISQDGMRI
LVGANGYDRYRGALYIYDLVTAPGDHVHHWQRTTLSANGTEQAEDKKHEL
RVLPRGSAFGFSCSMSADARRLVVGAPGHDTQRGAVFVFAYSASQSRWVE
VQRLSTHDARSGDSFGWAVVVNHDCTVLATSARGKKANNGEVFAYDCEKG
CTKCELVSRINAPDYTDKTGPRGIRIRNNFGTSMSMNAKGDVLVVSSIGY
DDERGAVYIFRRAARGEEWQLAQRVTSPKAQQRGFFGYRLAMDHDANHIV
IGADGEDEYTGAVYVFHKNRNEYEFAYEINAEEAEEEDNFGASIAMSGNG
HTLIVGAPGANRGRLKDHGLVYVYEKVKGEKKDGWALAETVSLPVEHSSQ
GNYFGWNVDISANGRKYVSSAPESYGGSGLVAFGDFDVSGRSMMNSASLI
HDEIESGKEEL*
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mRNA from alignment at tig00000860_pilon:957213..958598+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8951.t1 ID=Ggra8951.t1|Name=Ggra8951.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1386bp|location=Sequence derived from alignment at tig00000860_pilon:957213..958598+ (Gracilaria gracilis GNS1m male)
ATGCATTACGTGATTGCTTCGCTTCTGCTGCTTTCGCTCAGCGCCCTGGC
CTGTGCCGGGCGTCTGTTCGTGCAGCCGCCCACTCAAGATCGTACCAACA
AGCTGAAGTTCGGCCAGAGTACTTGTATCAGTCAGGATGGAATGCGCATT
CTGGTCGGTGCGAACGGGTACGATCGGTATAGAGGCGCTCTGTATATCTA
CGACCTCGTCACAGCGCCCGGTGATCATGTGCATCATTGGCAGCGCACCA
CGCTGTCTGCAAACGGAACAGAGCAGGCTGAAGACAAGAAGCATGAATTG
AGAGTGCTTCCAAGGGGAAGCGCGTTCGGCTTTTCTTGTTCAATGTCTGC
TGATGCGCGGAGGTTAGTCGTCGGAGCTCCTGGACATGATACACAACGCG
GTGCTGTGTTCGTGTTCGCGTATTCGGCATCACAGAGTAGATGGGTCGAA
GTGCAACGTCTCAGCACGCATGATGCGCGATCTGGCGACTCTTTTGGATG
GGCTGTGGTTGTGAATCATGACTGTACAGTATTGGCGACCAGTGCGAGAG
GGAAGAAGGCTAACAATGGAGAAGTGTTCGCCTATGATTGCGAGAAGGGG
TGTACGAAATGTGAACTAGTTTCTCGTATCAATGCGCCGGATTACACGGA
TAAAACTGGGCCGCGTGGGATCCGCATTCGAAATAACTTTGGCACCAGTA
TGAGCATGAACGCAAAAGGGGATGTGTTGGTGGTGAGCAGCATCGGCTAT
GACGATGAACGAGGAGCTGTTTATATTTTTAGACGGGCGGCTCGAGGTGA
GGAGTGGCAATTGGCGCAGCGCGTGACTTCGCCAAAGGCACAGCAACGTG
GATTCTTTGGGTACCGGCTTGCTATGGACCACGATGCAAATCACATTGTC
ATCGGAGCGGATGGGGAAGATGAGTATACCGGTGCCGTGTATGTGTTTCA
CAAGAACAGGAACGAGTACGAATTCGCATATGAGATCAATGCAGAAGAGG
CTGAAGAGGAGGACAACTTTGGGGCATCGATTGCAATGTCAGGGAATGGG
CACACGTTGATTGTTGGTGCACCGGGTGCCAACCGAGGCAGGTTGAAGGA
TCATGGATTGGTGTATGTGTACGAAAAAGTGAAGGGAGAGAAGAAGGACG
GATGGGCGCTGGCCGAAACAGTGTCATTGCCAGTAGAACACTCATCGCAG
GGCAACTATTTCGGATGGAATGTGGATATTAGCGCAAATGGAAGGAAGTA
TGTTAGTAGCGCACCCGAATCATACGGCGGCAGCGGACTTGTTGCGTTCG
GAGACTTTGATGTTTCCGGAAGAAGTATGATGAATTCTGCGTCGCTGATT
CATGACGAGATTGAGTCTGGGAAGGAGGAACTGTAA
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Coding sequence (CDS) from alignment at tig00000860_pilon:957213..958598+

>Ggra8951.t1 ID=Ggra8951.t1|Name=Ggra8951.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1386bp|location=Sequence derived from alignment at tig00000860_pilon:957213..958598+ (Gracilaria gracilis GNS1m male)
ATGCATTACGTGATTGCTTCGCTTCTGCTGCTTTCGCTCAGCGCCCTGGC
CTGTGCCGGGCGTCTGTTCGTGCAGCCGCCCACTCAAGATCGTACCAACA
AGCTGAAGTTCGGCCAGAGTACTTGTATCAGTCAGGATGGAATGCGCATT
CTGGTCGGTGCGAACGGGTACGATCGGTATAGAGGCGCTCTGTATATCTA
CGACCTCGTCACAGCGCCCGGTGATCATGTGCATCATTGGCAGCGCACCA
CGCTGTCTGCAAACGGAACAGAGCAGGCTGAAGACAAGAAGCATGAATTG
AGAGTGCTTCCAAGGGGAAGCGCGTTCGGCTTTTCTTGTTCAATGTCTGC
TGATGCGCGGAGGTTAGTCGTCGGAGCTCCTGGACATGATACACAACGCG
GTGCTGTGTTCGTGTTCGCGTATTCGGCATCACAGAGTAGATGGGTCGAA
GTGCAACGTCTCAGCACGCATGATGCGCGATCTGGCGACTCTTTTGGATG
GGCTGTGGTTGTGAATCATGACTGTACAGTATTGGCGACCAGTGCGAGAG
GGAAGAAGGCTAACAATGGAGAAGTGTTCGCCTATGATTGCGAGAAGGGG
TGTACGAAATGTGAACTAGTTTCTCGTATCAATGCGCCGGATTACACGGA
TAAAACTGGGCCGCGTGGGATCCGCATTCGAAATAACTTTGGCACCAGTA
TGAGCATGAACGCAAAAGGGGATGTGTTGGTGGTGAGCAGCATCGGCTAT
GACGATGAACGAGGAGCTGTTTATATTTTTAGACGGGCGGCTCGAGGTGA
GGAGTGGCAATTGGCGCAGCGCGTGACTTCGCCAAAGGCACAGCAACGTG
GATTCTTTGGGTACCGGCTTGCTATGGACCACGATGCAAATCACATTGTC
ATCGGAGCGGATGGGGAAGATGAGTATACCGGTGCCGTGTATGTGTTTCA
CAAGAACAGGAACGAGTACGAATTCGCATATGAGATCAATGCAGAAGAGG
CTGAAGAGGAGGACAACTTTGGGGCATCGATTGCAATGTCAGGGAATGGG
CACACGTTGATTGTTGGTGCACCGGGTGCCAACCGAGGCAGGTTGAAGGA
TCATGGATTGGTGTATGTGTACGAAAAAGTGAAGGGAGAGAAGAAGGACG
GATGGGCGCTGGCCGAAACAGTGTCATTGCCAGTAGAACACTCATCGCAG
GGCAACTATTTCGGATGGAATGTGGATATTAGCGCAAATGGAAGGAAGTA
TGTTAGTAGCGCACCCGAATCATACGGCGGCAGCGGACTTGTTGCGTTCG
GAGACTTTGATGTTTCCGGAAGAAGTATGATGAATTCTGCGTCGCTGATT
CATGACGAGATTGAGTCTGGGAAGGAGGAACTGTAA
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