Ggra8949.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8949.t1
Unique NameGgra8949.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length265
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:954018..954812 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7213.XP_004537287.1
Preferred nameRNF113A
PFAMszf-C3HC4_3,zf-CCCH
Max annot lvl33208|Metazoa
KEGG koko:K13127,ko:K15696
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0006139,GO:0006396,GO:0006397,GO:0006464,GO:0006725,GO:0006807,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0008270,GO:0008380,GO:0009987,GO:0010467,GO:0010468,GO:0016070,GO:0016071,GO:0016074,GO:0016567,GO:0016740,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0022008,GO:0030154,GO:0030182,GO:0031323,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0034247,GO:0034470,GO:0034641,GO:0034660,GO:0036211,GO:0043144,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043484,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0046872,GO:0046914,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0070647,GO:0071704,GO:0080090,GO:0090304,GO:0140096,GO:1901360,GO:1901564,GO:1990904
Evalue6.13e-55
EggNOG OGsCOG5152@1|root,KOG1813@2759|Eukaryota,38BQR@33154|Opisthokonta,3BHF3@33208|Metazoa,3CSXG@33213|Bilateria,41XPT@6656|Arthropoda,3SKMX@50557|Insecta,44X5K@7147|Diptera
DescriptionZinc ion binding
COG categoryO
BRITEko00000,ko03041,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8949Ggra8949Gracilaria gracilis GNS1m malegenetig00000860_pilon 954018..954812 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8949.t1.start1Ggra8949.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 954018..954020 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8949.t1.CDS1Ggra8949.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 954018..954812 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8949.t1.exon1Ggra8949.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 954018..954812 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8949.t1.stop1Ggra8949.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 954810..954812 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8949.t1Ggra8949.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 954018..954812 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8949.t1 ID=Ggra8949.t1|Name=Ggra8949.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=265bp
MTAGASTEKLEVVEKHENTIFKKRKRPGNMRTRKRQKPPPQEESGEIGEE
ARVKLVQLKTRGPRKKSTTGWHREQFSTNIEQLVSNDATAERTDTGGEAV
SSKQSKRPFGPMKAPAHLRASVRVDYQPDVCKDYKETGYCGFGDSCKFLH
DRSDYKAGWQLERDWAEKEKKKRDALLRGEDPDAEEANRNKEEYDKDGLP
FACFLCREEFKSPVMTLCEHYFCEECALSRMEKDHSCPICKKQLRDTLNP
APKLIAKLELKHKL*
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spliced messenger RNA

>Ggra8949.t1 ID=Ggra8949.t1|Name=Ggra8949.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=795bp|location=Sequence derived from alignment at tig00000860_pilon:954018..954812+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGCGGGGGCGTCAACTGAAAAGCTTGAGGTGGTAGAAAAGCATGA
AAACACCATATTCAAGAAGCGAAAACGCCCCGGGAATATGAGAACGCGGA
AGAGACAGAAACCACCCCCGCAAGAAGAAAGCGGAGAAATTGGCGAAGAA
GCGAGGGTGAAGCTTGTTCAGTTAAAGACAAGAGGACCACGGAAGAAGAG
TACAACGGGATGGCACAGGGAACAGTTTTCGACAAACATTGAGCAACTGG
TTTCGAATGATGCCACGGCGGAGAGAACCGACACAGGAGGAGAAGCTGTA
TCTTCAAAGCAGTCTAAAAGGCCATTTGGTCCCATGAAAGCGCCTGCCCA
TCTGCGAGCGTCAGTTCGTGTAGACTACCAACCAGATGTTTGCAAAGACT
ACAAAGAAACCGGTTATTGTGGATTTGGTGATTCTTGCAAGTTCCTGCAC
GATAGAAGCGACTACAAAGCCGGATGGCAGTTAGAAAGAGACTGGGCTGA
AAAAGAAAAAAAGAAACGTGACGCCTTGCTAAGAGGTGAAGACCCGGACG
CCGAGGAGGCGAACAGGAATAAGGAAGAGTACGACAAGGATGGGCTTCCT
TTTGCGTGCTTTCTTTGCCGAGAAGAGTTCAAGTCACCAGTTATGACTCT
ATGTGAGCATTACTTTTGTGAAGAATGTGCTCTTTCTAGAATGGAAAAAG
ATCATAGCTGTCCAATATGTAAGAAACAATTGCGGGATACCTTGAACCCT
GCACCGAAACTAATTGCAAAGCTTGAACTAAAGCATAAACTCTAG
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protein sequence of Ggra8949.t1

>Ggra8949.t1 ID=Ggra8949.t1|Name=Ggra8949.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=265bp
MTAGASTEKLEVVEKHENTIFKKRKRPGNMRTRKRQKPPPQEESGEIGEE
ARVKLVQLKTRGPRKKSTTGWHREQFSTNIEQLVSNDATAERTDTGGEAV
SSKQSKRPFGPMKAPAHLRASVRVDYQPDVCKDYKETGYCGFGDSCKFLH
DRSDYKAGWQLERDWAEKEKKKRDALLRGEDPDAEEANRNKEEYDKDGLP
FACFLCREEFKSPVMTLCEHYFCEECALSRMEKDHSCPICKKQLRDTLNP
APKLIAKLELKHKL*
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mRNA from alignment at tig00000860_pilon:954018..954812+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8949.t1 ID=Ggra8949.t1|Name=Ggra8949.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=795bp|location=Sequence derived from alignment at tig00000860_pilon:954018..954812+ (Gracilaria gracilis GNS1m male)
ATGACCGCGGGGGCGTCAACTGAAAAGCTTGAGGTGGTAGAAAAGCATGA
AAACACCATATTCAAGAAGCGAAAACGCCCCGGGAATATGAGAACGCGGA
AGAGACAGAAACCACCCCCGCAAGAAGAAAGCGGAGAAATTGGCGAAGAA
GCGAGGGTGAAGCTTGTTCAGTTAAAGACAAGAGGACCACGGAAGAAGAG
TACAACGGGATGGCACAGGGAACAGTTTTCGACAAACATTGAGCAACTGG
TTTCGAATGATGCCACGGCGGAGAGAACCGACACAGGAGGAGAAGCTGTA
TCTTCAAAGCAGTCTAAAAGGCCATTTGGTCCCATGAAAGCGCCTGCCCA
TCTGCGAGCGTCAGTTCGTGTAGACTACCAACCAGATGTTTGCAAAGACT
ACAAAGAAACCGGTTATTGTGGATTTGGTGATTCTTGCAAGTTCCTGCAC
GATAGAAGCGACTACAAAGCCGGATGGCAGTTAGAAAGAGACTGGGCTGA
AAAAGAAAAAAAGAAACGTGACGCCTTGCTAAGAGGTGAAGACCCGGACG
CCGAGGAGGCGAACAGGAATAAGGAAGAGTACGACAAGGATGGGCTTCCT
TTTGCGTGCTTTCTTTGCCGAGAAGAGTTCAAGTCACCAGTTATGACTCT
ATGTGAGCATTACTTTTGTGAAGAATGTGCTCTTTCTAGAATGGAAAAAG
ATCATAGCTGTCCAATATGTAAGAAACAATTGCGGGATACCTTGAACCCT
GCACCGAAACTAATTGCAAAGCTTGAACTAAAGCATAAACTCTAG
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Coding sequence (CDS) from alignment at tig00000860_pilon:954018..954812+

>Ggra8949.t1 ID=Ggra8949.t1|Name=Ggra8949.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=795bp|location=Sequence derived from alignment at tig00000860_pilon:954018..954812+ (Gracilaria gracilis GNS1m male)
ATGACCGCGGGGGCGTCAACTGAAAAGCTTGAGGTGGTAGAAAAGCATGA
AAACACCATATTCAAGAAGCGAAAACGCCCCGGGAATATGAGAACGCGGA
AGAGACAGAAACCACCCCCGCAAGAAGAAAGCGGAGAAATTGGCGAAGAA
GCGAGGGTGAAGCTTGTTCAGTTAAAGACAAGAGGACCACGGAAGAAGAG
TACAACGGGATGGCACAGGGAACAGTTTTCGACAAACATTGAGCAACTGG
TTTCGAATGATGCCACGGCGGAGAGAACCGACACAGGAGGAGAAGCTGTA
TCTTCAAAGCAGTCTAAAAGGCCATTTGGTCCCATGAAAGCGCCTGCCCA
TCTGCGAGCGTCAGTTCGTGTAGACTACCAACCAGATGTTTGCAAAGACT
ACAAAGAAACCGGTTATTGTGGATTTGGTGATTCTTGCAAGTTCCTGCAC
GATAGAAGCGACTACAAAGCCGGATGGCAGTTAGAAAGAGACTGGGCTGA
AAAAGAAAAAAAGAAACGTGACGCCTTGCTAAGAGGTGAAGACCCGGACG
CCGAGGAGGCGAACAGGAATAAGGAAGAGTACGACAAGGATGGGCTTCCT
TTTGCGTGCTTTCTTTGCCGAGAAGAGTTCAAGTCACCAGTTATGACTCT
ATGTGAGCATTACTTTTGTGAAGAATGTGCTCTTTCTAGAATGGAAAAAG
ATCATAGCTGTCCAATATGTAAGAAACAATTGCGGGATACCTTGAACCCT
GCACCGAAACTAATTGCAAAGCTTGAACTAAAGCATAAACTCTAG
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