Ggra8948.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8948.t1
Unique NameGgra8948.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length370
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:945824..946933 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8948Ggra8948Gracilaria gracilis GNS1m malegenetig00000860_pilon 945824..946933 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8948.t1.stop1Ggra8948.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 945824..945826 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8948.t1.CDS1Ggra8948.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 945824..946933 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8948.t1.exon1Ggra8948.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 945824..946933 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8948.t1.start1Ggra8948.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 946931..946933 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8948.t1Ggra8948.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 945824..946933 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8948.t1 ID=Ggra8948.t1|Name=Ggra8948.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=370bp
MSSSSRSYTVAKYDHLKRSVTVVEPTTEIGRQLRDVASFTISMYPVIDDS
GTAIAFSATRKDEIETTLKGFLPSPKIILTPELFNSRLFPVQLVRDVAAL
YGLDEVPAGIISSLGLESRETSNPSFLTHIWFMNFIDASFETMKIGVDMY
RRSRSASRLDVTAVIAHNNPAPGGNLTDLLPPSGSLGENQAPSSTVELPH
DQTSQPPVANPNTPNTEDPAEPGQNPHLSETARTGYNIIATRKANYVSQH
FKDNRFTGDLSQSIELTLRDYNVCARQHRLTAGQKADYFVNVLDGPARTF
FFHNARDDMPFEQMAMMMTAEYNSNARQLQVYSILNNLRIEKVMTENELI
SYSEGLSKIITLIEELSPQ*
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spliced messenger RNA

>Ggra8948.t1 ID=Ggra8948.t1|Name=Ggra8948.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1110bp|location=Sequence derived from alignment at tig00000860_pilon:945824..946933- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTCTTCAAGTCGCTCTTATACCGTGGCTAAATATGATCACTTGAA
GCGTTCGGTTACTGTTGTAGAACCCACAACTGAAATCGGCCGCCAACTCC
GTGATGTTGCGAGCTTCACAATTTCGATGTATCCCGTCATTGATGATAGC
GGCACTGCAATTGCGTTTAGTGCTACTCGCAAGGATGAGATAGAAACTAC
CCTCAAAGGTTTTCTACCTTCCCCGAAGATCATCCTAACCCCCGAGCTTT
TCAATTCCAGGCTATTCCCGGTTCAACTGGTCCGAGATGTCGCCGCACTC
TATGGCCTTGACGAAGTCCCTGCTGGAATAATATCCTCTCTGGGGTTGGA
GTCCCGAGAGACGTCAAACCCTTCTTTCCTTACCCACATATGGTTCATGA
ACTTCATCGACGCCTCTTTCGAGACTATGAAAATTGGTGTGGATATGTAC
CGTCGCAGTCGATCTGCGTCCCGACTGGATGTGACTGCAGTCATAGCCCA
CAATAACCCTGCCCCTGGTGGAAACCTCACGGACCTTCTACCTCCCTCTG
GCTCTTTGGGTGAGAACCAAGCCCCAAGTTCTACTGTGGAACTTCCGCAT
GACCAGACTTCGCAACCACCTGTTGCGAATCCTAACACGCCTAACACAGA
GGACCCCGCAGAGCCGGGCCAGAACCCTCACTTAAGTGAGACAGCCCGCA
CTGGGTACAACATTATTGCCACTCGTAAGGCAAACTATGTCTCCCAGCAC
TTCAAAGACAATCGCTTCACCGGTGACCTATCCCAATCGATTGAACTCAC
GTTACGTGACTACAACGTTTGTGCTCGTCAACACCGACTGACTGCAGGAC
AAAAAGCTGACTACTTCGTCAACGTTTTGGATGGCCCCGCACGCACGTTC
TTCTTCCATAATGCCCGTGATGATATGCCATTTGAACAGATGGCAATGAT
GATGACCGCCGAATACAACAGTAACGCTCGTCAACTTCAGGTGTACAGCA
TTCTGAACAATCTCCGTATCGAAAAAGTTATGACAGAAAACGAGCTCATA
TCCTATTCTGAGGGTCTTTCGAAGATCATCACATTGATTGAGGAACTCTC
CCCTCAATGA
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protein sequence of Ggra8948.t1

>Ggra8948.t1 ID=Ggra8948.t1|Name=Ggra8948.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=370bp
MSSSSRSYTVAKYDHLKRSVTVVEPTTEIGRQLRDVASFTISMYPVIDDS
GTAIAFSATRKDEIETTLKGFLPSPKIILTPELFNSRLFPVQLVRDVAAL
YGLDEVPAGIISSLGLESRETSNPSFLTHIWFMNFIDASFETMKIGVDMY
RRSRSASRLDVTAVIAHNNPAPGGNLTDLLPPSGSLGENQAPSSTVELPH
DQTSQPPVANPNTPNTEDPAEPGQNPHLSETARTGYNIIATRKANYVSQH
FKDNRFTGDLSQSIELTLRDYNVCARQHRLTAGQKADYFVNVLDGPARTF
FFHNARDDMPFEQMAMMMTAEYNSNARQLQVYSILNNLRIEKVMTENELI
SYSEGLSKIITLIEELSPQ*
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mRNA from alignment at tig00000860_pilon:945824..946933-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8948.t1 ID=Ggra8948.t1|Name=Ggra8948.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1110bp|location=Sequence derived from alignment at tig00000860_pilon:945824..946933- (Gracilaria gracilis GNS1m male)
ATGTCTTCTTCAAGTCGCTCTTATACCGTGGCTAAATATGATCACTTGAA
GCGTTCGGTTACTGTTGTAGAACCCACAACTGAAATCGGCCGCCAACTCC
GTGATGTTGCGAGCTTCACAATTTCGATGTATCCCGTCATTGATGATAGC
GGCACTGCAATTGCGTTTAGTGCTACTCGCAAGGATGAGATAGAAACTAC
CCTCAAAGGTTTTCTACCTTCCCCGAAGATCATCCTAACCCCCGAGCTTT
TCAATTCCAGGCTATTCCCGGTTCAACTGGTCCGAGATGTCGCCGCACTC
TATGGCCTTGACGAAGTCCCTGCTGGAATAATATCCTCTCTGGGGTTGGA
GTCCCGAGAGACGTCAAACCCTTCTTTCCTTACCCACATATGGTTCATGA
ACTTCATCGACGCCTCTTTCGAGACTATGAAAATTGGTGTGGATATGTAC
CGTCGCAGTCGATCTGCGTCCCGACTGGATGTGACTGCAGTCATAGCCCA
CAATAACCCTGCCCCTGGTGGAAACCTCACGGACCTTCTACCTCCCTCTG
GCTCTTTGGGTGAGAACCAAGCCCCAAGTTCTACTGTGGAACTTCCGCAT
GACCAGACTTCGCAACCACCTGTTGCGAATCCTAACACGCCTAACACAGA
GGACCCCGCAGAGCCGGGCCAGAACCCTCACTTAAGTGAGACAGCCCGCA
CTGGGTACAACATTATTGCCACTCGTAAGGCAAACTATGTCTCCCAGCAC
TTCAAAGACAATCGCTTCACCGGTGACCTATCCCAATCGATTGAACTCAC
GTTACGTGACTACAACGTTTGTGCTCGTCAACACCGACTGACTGCAGGAC
AAAAAGCTGACTACTTCGTCAACGTTTTGGATGGCCCCGCACGCACGTTC
TTCTTCCATAATGCCCGTGATGATATGCCATTTGAACAGATGGCAATGAT
GATGACCGCCGAATACAACAGTAACGCTCGTCAACTTCAGGTGTACAGCA
TTCTGAACAATCTCCGTATCGAAAAAGTTATGACAGAAAACGAGCTCATA
TCCTATTCTGAGGGTCTTTCGAAGATCATCACATTGATTGAGGAACTCTC
CCCTCAATGA
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Coding sequence (CDS) from alignment at tig00000860_pilon:945824..946933-

>Ggra8948.t1 ID=Ggra8948.t1|Name=Ggra8948.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1110bp|location=Sequence derived from alignment at tig00000860_pilon:945824..946933- (Gracilaria gracilis GNS1m male)
ATGTCTTCTTCAAGTCGCTCTTATACCGTGGCTAAATATGATCACTTGAA
GCGTTCGGTTACTGTTGTAGAACCCACAACTGAAATCGGCCGCCAACTCC
GTGATGTTGCGAGCTTCACAATTTCGATGTATCCCGTCATTGATGATAGC
GGCACTGCAATTGCGTTTAGTGCTACTCGCAAGGATGAGATAGAAACTAC
CCTCAAAGGTTTTCTACCTTCCCCGAAGATCATCCTAACCCCCGAGCTTT
TCAATTCCAGGCTATTCCCGGTTCAACTGGTCCGAGATGTCGCCGCACTC
TATGGCCTTGACGAAGTCCCTGCTGGAATAATATCCTCTCTGGGGTTGGA
GTCCCGAGAGACGTCAAACCCTTCTTTCCTTACCCACATATGGTTCATGA
ACTTCATCGACGCCTCTTTCGAGACTATGAAAATTGGTGTGGATATGTAC
CGTCGCAGTCGATCTGCGTCCCGACTGGATGTGACTGCAGTCATAGCCCA
CAATAACCCTGCCCCTGGTGGAAACCTCACGGACCTTCTACCTCCCTCTG
GCTCTTTGGGTGAGAACCAAGCCCCAAGTTCTACTGTGGAACTTCCGCAT
GACCAGACTTCGCAACCACCTGTTGCGAATCCTAACACGCCTAACACAGA
GGACCCCGCAGAGCCGGGCCAGAACCCTCACTTAAGTGAGACAGCCCGCA
CTGGGTACAACATTATTGCCACTCGTAAGGCAAACTATGTCTCCCAGCAC
TTCAAAGACAATCGCTTCACCGGTGACCTATCCCAATCGATTGAACTCAC
GTTACGTGACTACAACGTTTGTGCTCGTCAACACCGACTGACTGCAGGAC
AAAAAGCTGACTACTTCGTCAACGTTTTGGATGGCCCCGCACGCACGTTC
TTCTTCCATAATGCCCGTGATGATATGCCATTTGAACAGATGGCAATGAT
GATGACCGCCGAATACAACAGTAACGCTCGTCAACTTCAGGTGTACAGCA
TTCTGAACAATCTCCGTATCGAAAAAGTTATGACAGAAAACGAGCTCATA
TCCTATTCTGAGGGTCTTTCGAAGATCATCACATTGATTGAGGAACTCTC
CCCTCAATGA
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