Ggra8947.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8947.t1
Unique NameGgra8947.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length267
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:944747..945547 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8947Ggra8947Gracilaria gracilis GNS1m malegenetig00000860_pilon 944747..945547 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8947.t1.stop1Ggra8947.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 944747..944749 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8947.t1.CDS1Ggra8947.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 944747..945547 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8947.t1.exon1Ggra8947.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 944747..945547 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8947.t1.start1Ggra8947.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 945545..945547 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8947.t1Ggra8947.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 944747..945547 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8947.t1 ID=Ggra8947.t1|Name=Ggra8947.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=267bp
MSRHRPPRSHFHPRTFEEGRRRNECHRCHAKWQPGHRCKPGSIRDHVRQR
IKRGEPAVHIVSDLVLAMEGDNAEQTEDTLATVADDGGQAEEDRLFDELT
ASDGQDSQDLEVLDQEFYTNHLSASITKNDGNYPSTDPQNFLEGDAILSL
NNVTQLVGQPLTGLTYRGTRYQAMLPRSTSRTSMWQSSIRPAIDPDYEAF
ALISEPQDHSSVCRSYGASSPTISSRSRSSEDSYHIHDSNSPMFHSNRWD
KSLYHSIPLRVSLRPM*
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spliced messenger RNA

>Ggra8947.t1 ID=Ggra8947.t1|Name=Ggra8947.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=801bp|location=Sequence derived from alignment at tig00000860_pilon:944747..945547- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTCGCCATCGCCCCCCTCGTTCCCACTTTCATCCTCGAACTTTTGA
GGAGGGTCGCCGACGCAACGAGTGCCACAGATGCCATGCGAAATGGCAAC
CAGGACATCGCTGCAAGCCTGGTTCGATTCGCGATCATGTCCGCCAGCGT
ATCAAACGCGGTGAACCCGCAGTGCACATCGTCTCGGACCTCGTCCTGGC
AATGGAGGGAGACAATGCGGAACAAACGGAAGACACATTGGCTACAGTCG
CAGATGATGGTGGCCAAGCCGAGGAAGATCGTCTGTTTGACGAATTAACG
GCAAGTGATGGACAAGACAGTCAAGATCTTGAGGTACTCGACCAGGAGTT
CTATACAAATCACTTGTCGGCCTCAATAACGAAAAATGATGGTAATTACC
CTTCCACCGATCCGCAGAATTTTCTTGAGGGTGACGCCATTCTCAGCCTC
AACAACGTCACCCAGCTCGTTGGGCAGCCTCTCACCGGACTGACCTACCG
AGGCACACGGTATCAAGCCATGTTACCGAGGTCAACTTCACGCACATCCA
TGTGGCAAAGCTCTATCAGACCCGCAATAGATCCCGACTACGAGGCTTTT
GCGTTGATATCGGAGCCCCAAGATCATTCGTCGGTATGTAGGAGTTACGG
GGCATCTTCACCAACAATAAGCTCCCGATCCCGAAGCTCAGAAGACTCCT
ATCACATACACGATTCAAATTCGCCGATGTTTCATTCGAATCGATGGGAC
AAATCACTTTACCACTCGATACCCCTCCGAGTGTCCCTCCGACCTATGTA
A
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protein sequence of Ggra8947.t1

>Ggra8947.t1 ID=Ggra8947.t1|Name=Ggra8947.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=267bp
MSRHRPPRSHFHPRTFEEGRRRNECHRCHAKWQPGHRCKPGSIRDHVRQR
IKRGEPAVHIVSDLVLAMEGDNAEQTEDTLATVADDGGQAEEDRLFDELT
ASDGQDSQDLEVLDQEFYTNHLSASITKNDGNYPSTDPQNFLEGDAILSL
NNVTQLVGQPLTGLTYRGTRYQAMLPRSTSRTSMWQSSIRPAIDPDYEAF
ALISEPQDHSSVCRSYGASSPTISSRSRSSEDSYHIHDSNSPMFHSNRWD
KSLYHSIPLRVSLRPM*
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mRNA from alignment at tig00000860_pilon:944747..945547-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8947.t1 ID=Ggra8947.t1|Name=Ggra8947.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=801bp|location=Sequence derived from alignment at tig00000860_pilon:944747..945547- (Gracilaria gracilis GNS1m male)
ATGAGTCGCCATCGCCCCCCTCGTTCCCACTTTCATCCTCGAACTTTTGA
GGAGGGTCGCCGACGCAACGAGTGCCACAGATGCCATGCGAAATGGCAAC
CAGGACATCGCTGCAAGCCTGGTTCGATTCGCGATCATGTCCGCCAGCGT
ATCAAACGCGGTGAACCCGCAGTGCACATCGTCTCGGACCTCGTCCTGGC
AATGGAGGGAGACAATGCGGAACAAACGGAAGACACATTGGCTACAGTCG
CAGATGATGGTGGCCAAGCCGAGGAAGATCGTCTGTTTGACGAATTAACG
GCAAGTGATGGACAAGACAGTCAAGATCTTGAGGTACTCGACCAGGAGTT
CTATACAAATCACTTGTCGGCCTCAATAACGAAAAATGATGGTAATTACC
CTTCCACCGATCCGCAGAATTTTCTTGAGGGTGACGCCATTCTCAGCCTC
AACAACGTCACCCAGCTCGTTGGGCAGCCTCTCACCGGACTGACCTACCG
AGGCACACGGTATCAAGCCATGTTACCGAGGTCAACTTCACGCACATCCA
TGTGGCAAAGCTCTATCAGACCCGCAATAGATCCCGACTACGAGGCTTTT
GCGTTGATATCGGAGCCCCAAGATCATTCGTCGGTATGTAGGAGTTACGG
GGCATCTTCACCAACAATAAGCTCCCGATCCCGAAGCTCAGAAGACTCCT
ATCACATACACGATTCAAATTCGCCGATGTTTCATTCGAATCGATGGGAC
AAATCACTTTACCACTCGATACCCCTCCGAGTGTCCCTCCGACCTATGTA
A
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Coding sequence (CDS) from alignment at tig00000860_pilon:944747..945547-

>Ggra8947.t1 ID=Ggra8947.t1|Name=Ggra8947.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=801bp|location=Sequence derived from alignment at tig00000860_pilon:944747..945547- (Gracilaria gracilis GNS1m male)
ATGAGTCGCCATCGCCCCCCTCGTTCCCACTTTCATCCTCGAACTTTTGA
GGAGGGTCGCCGACGCAACGAGTGCCACAGATGCCATGCGAAATGGCAAC
CAGGACATCGCTGCAAGCCTGGTTCGATTCGCGATCATGTCCGCCAGCGT
ATCAAACGCGGTGAACCCGCAGTGCACATCGTCTCGGACCTCGTCCTGGC
AATGGAGGGAGACAATGCGGAACAAACGGAAGACACATTGGCTACAGTCG
CAGATGATGGTGGCCAAGCCGAGGAAGATCGTCTGTTTGACGAATTAACG
GCAAGTGATGGACAAGACAGTCAAGATCTTGAGGTACTCGACCAGGAGTT
CTATACAAATCACTTGTCGGCCTCAATAACGAAAAATGATGGTAATTACC
CTTCCACCGATCCGCAGAATTTTCTTGAGGGTGACGCCATTCTCAGCCTC
AACAACGTCACCCAGCTCGTTGGGCAGCCTCTCACCGGACTGACCTACCG
AGGCACACGGTATCAAGCCATGTTACCGAGGTCAACTTCACGCACATCCA
TGTGGCAAAGCTCTATCAGACCCGCAATAGATCCCGACTACGAGGCTTTT
GCGTTGATATCGGAGCCCCAAGATCATTCGTCGGTATGTAGGAGTTACGG
GGCATCTTCACCAACAATAAGCTCCCGATCCCGAAGCTCAGAAGACTCCT
ATCACATACACGATTCAAATTCGCCGATGTTTCATTCGAATCGATGGGAC
AAATCACTTTACCACTCGATACCCCTCCGAGTGTCCCTCCGACCTATGTA
A
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