Ggra8946.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8946.t1
Unique NameGgra8946.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length406
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:897780..898997 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8946Ggra8946Gracilaria gracilis GNS1m malegenetig00000860_pilon 897780..898997 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8946.t1.start1Ggra8946.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 897780..897782 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8946.t1.CDS1Ggra8946.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 897780..898997 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8946.t1.exon1Ggra8946.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 897780..898997 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8946.t1.stop1Ggra8946.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 898995..898997 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8946.t1Ggra8946.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 897780..898997 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8946.t1 ID=Ggra8946.t1|Name=Ggra8946.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=406bp
MALGTEGAGLRTGNPIQPPGAANQDDPQEDELQEFLKTLLKLSISFSVGL
RSALSKSYNLDKKQSIMKLATKLMKYPMAHAVADIGGASFGKGATFVTEF
PKLHLPKQNFNRAATASRASGIAQTPTNNTDSQTQPEHSSYLSPLKQNLS
PTPHPAKCFPILHPGLTARQRATNHDTYNMTPRHKRDNINVVLRVAGHEE
KTFALLETNALEHPLRNPRMLTQLFAQAGLRTKLTVVGTHDKRKLYICGP
TSALKLLQEAYDRRRNTTRREGYVNLPKALLTTPVEILEYICSDTNGTNL
YQLIIGLRREIFRLVENGNPWRPRFFFAKCLRSHEKRLYESLLSKRSECF
LEPIDPLPAHPMARRARPGAKTADQHIAQRPKTQVRDREGGGSQVTIERT
PLDVG*
back to top

spliced messenger RNA

>Ggra8946.t1 ID=Ggra8946.t1|Name=Ggra8946.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1218bp|location=Sequence derived from alignment at tig00000860_pilon:897780..898997+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCCTCGGAACAGAGGGCGCCGGCCTTCGTACTGGAAATCCGATACA
GCCACCGGGGGCGGCCAATCAAGATGATCCTCAGGAAGACGAACTACAAG
AATTCCTCAAAACACTTCTCAAGCTCTCAATCTCTTTCAGCGTAGGACTG
CGTAGCGCCCTATCTAAGTCTTACAACTTAGATAAAAAGCAATCCATAAT
GAAACTCGCAACCAAACTCATGAAATATCCCATGGCCCACGCCGTGGCAG
ACATAGGGGGCGCCAGCTTTGGCAAAGGTGCAACCTTCGTAACGGAGTTT
CCCAAACTGCACCTTCCCAAACAAAACTTTAACCGTGCCGCGACTGCTAG
CAGAGCATCAGGCATTGCGCAAACCCCAACAAACAATACCGATTCTCAAA
CGCAACCGGAACACAGCTCGTACCTTAGCCCGTTAAAACAGAATCTCTCA
CCAACACCGCACCCAGCAAAATGCTTTCCCATACTGCATCCTGGCCTAAC
CGCCCGACAACGCGCAACCAATCACGATACATACAACATGACACCAAGAC
ACAAGCGAGACAACATCAATGTTGTACTCCGCGTTGCGGGCCATGAAGAA
AAGACGTTCGCGTTGCTAGAAACCAATGCTTTGGAGCATCCTCTGCGTAA
TCCAAGGATGCTCACTCAGCTATTTGCGCAAGCCGGGCTCCGTACTAAGC
TGACAGTAGTGGGCACACATGATAAGAGGAAGCTGTACATCTGCGGCCCA
ACGTCTGCTCTCAAGCTTTTACAGGAAGCATACGACCGTAGGCGTAATAC
AACGAGACGCGAAGGCTATGTAAACCTCCCGAAAGCTCTCTTGACAACGC
CAGTTGAAATCCTCGAGTACATCTGCTCAGACACAAACGGTACAAACCTG
TACCAACTCATTATTGGATTGAGACGGGAAATCTTCCGCCTTGTGGAAAA
CGGGAACCCATGGCGACCTAGGTTTTTCTTTGCCAAGTGCCTTCGCAGCC
ACGAAAAGCGGTTGTATGAGTCTCTACTATCCAAAAGGAGCGAGTGCTTC
TTAGAACCCATCGACCCACTGCCAGCTCACCCTATGGCAAGACGCGCCCG
CCCCGGGGCAAAAACAGCTGACCAACATATCGCCCAGAGACCAAAAACCC
AGGTGAGAGATCGAGAAGGCGGAGGCAGTCAGGTCACTATTGAACGCACA
CCCTTGGATGTGGGCTAA
back to top

protein sequence of Ggra8946.t1

>Ggra8946.t1 ID=Ggra8946.t1|Name=Ggra8946.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=406bp
MALGTEGAGLRTGNPIQPPGAANQDDPQEDELQEFLKTLLKLSISFSVGL
RSALSKSYNLDKKQSIMKLATKLMKYPMAHAVADIGGASFGKGATFVTEF
PKLHLPKQNFNRAATASRASGIAQTPTNNTDSQTQPEHSSYLSPLKQNLS
PTPHPAKCFPILHPGLTARQRATNHDTYNMTPRHKRDNINVVLRVAGHEE
KTFALLETNALEHPLRNPRMLTQLFAQAGLRTKLTVVGTHDKRKLYICGP
TSALKLLQEAYDRRRNTTRREGYVNLPKALLTTPVEILEYICSDTNGTNL
YQLIIGLRREIFRLVENGNPWRPRFFFAKCLRSHEKRLYESLLSKRSECF
LEPIDPLPAHPMARRARPGAKTADQHIAQRPKTQVRDREGGGSQVTIERT
PLDVG*
back to top

mRNA from alignment at tig00000860_pilon:897780..898997+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8946.t1 ID=Ggra8946.t1|Name=Ggra8946.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1218bp|location=Sequence derived from alignment at tig00000860_pilon:897780..898997+ (Gracilaria gracilis GNS1m male)
ATGGCCCTCGGAACAGAGGGCGCCGGCCTTCGTACTGGAAATCCGATACA
GCCACCGGGGGCGGCCAATCAAGATGATCCTCAGGAAGACGAACTACAAG
AATTCCTCAAAACACTTCTCAAGCTCTCAATCTCTTTCAGCGTAGGACTG
CGTAGCGCCCTATCTAAGTCTTACAACTTAGATAAAAAGCAATCCATAAT
GAAACTCGCAACCAAACTCATGAAATATCCCATGGCCCACGCCGTGGCAG
ACATAGGGGGCGCCAGCTTTGGCAAAGGTGCAACCTTCGTAACGGAGTTT
CCCAAACTGCACCTTCCCAAACAAAACTTTAACCGTGCCGCGACTGCTAG
CAGAGCATCAGGCATTGCGCAAACCCCAACAAACAATACCGATTCTCAAA
CGCAACCGGAACACAGCTCGTACCTTAGCCCGTTAAAACAGAATCTCTCA
CCAACACCGCACCCAGCAAAATGCTTTCCCATACTGCATCCTGGCCTAAC
CGCCCGACAACGCGCAACCAATCACGATACATACAACATGACACCAAGAC
ACAAGCGAGACAACATCAATGTTGTACTCCGCGTTGCGGGCCATGAAGAA
AAGACGTTCGCGTTGCTAGAAACCAATGCTTTGGAGCATCCTCTGCGTAA
TCCAAGGATGCTCACTCAGCTATTTGCGCAAGCCGGGCTCCGTACTAAGC
TGACAGTAGTGGGCACACATGATAAGAGGAAGCTGTACATCTGCGGCCCA
ACGTCTGCTCTCAAGCTTTTACAGGAAGCATACGACCGTAGGCGTAATAC
AACGAGACGCGAAGGCTATGTAAACCTCCCGAAAGCTCTCTTGACAACGC
CAGTTGAAATCCTCGAGTACATCTGCTCAGACACAAACGGTACAAACCTG
TACCAACTCATTATTGGATTGAGACGGGAAATCTTCCGCCTTGTGGAAAA
CGGGAACCCATGGCGACCTAGGTTTTTCTTTGCCAAGTGCCTTCGCAGCC
ACGAAAAGCGGTTGTATGAGTCTCTACTATCCAAAAGGAGCGAGTGCTTC
TTAGAACCCATCGACCCACTGCCAGCTCACCCTATGGCAAGACGCGCCCG
CCCCGGGGCAAAAACAGCTGACCAACATATCGCCCAGAGACCAAAAACCC
AGGTGAGAGATCGAGAAGGCGGAGGCAGTCAGGTCACTATTGAACGCACA
CCCTTGGATGTGGGCTAA
back to top

Coding sequence (CDS) from alignment at tig00000860_pilon:897780..898997+

>Ggra8946.t1 ID=Ggra8946.t1|Name=Ggra8946.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1218bp|location=Sequence derived from alignment at tig00000860_pilon:897780..898997+ (Gracilaria gracilis GNS1m male)
ATGGCCCTCGGAACAGAGGGCGCCGGCCTTCGTACTGGAAATCCGATACA
GCCACCGGGGGCGGCCAATCAAGATGATCCTCAGGAAGACGAACTACAAG
AATTCCTCAAAACACTTCTCAAGCTCTCAATCTCTTTCAGCGTAGGACTG
CGTAGCGCCCTATCTAAGTCTTACAACTTAGATAAAAAGCAATCCATAAT
GAAACTCGCAACCAAACTCATGAAATATCCCATGGCCCACGCCGTGGCAG
ACATAGGGGGCGCCAGCTTTGGCAAAGGTGCAACCTTCGTAACGGAGTTT
CCCAAACTGCACCTTCCCAAACAAAACTTTAACCGTGCCGCGACTGCTAG
CAGAGCATCAGGCATTGCGCAAACCCCAACAAACAATACCGATTCTCAAA
CGCAACCGGAACACAGCTCGTACCTTAGCCCGTTAAAACAGAATCTCTCA
CCAACACCGCACCCAGCAAAATGCTTTCCCATACTGCATCCTGGCCTAAC
CGCCCGACAACGCGCAACCAATCACGATACATACAACATGACACCAAGAC
ACAAGCGAGACAACATCAATGTTGTACTCCGCGTTGCGGGCCATGAAGAA
AAGACGTTCGCGTTGCTAGAAACCAATGCTTTGGAGCATCCTCTGCGTAA
TCCAAGGATGCTCACTCAGCTATTTGCGCAAGCCGGGCTCCGTACTAAGC
TGACAGTAGTGGGCACACATGATAAGAGGAAGCTGTACATCTGCGGCCCA
ACGTCTGCTCTCAAGCTTTTACAGGAAGCATACGACCGTAGGCGTAATAC
AACGAGACGCGAAGGCTATGTAAACCTCCCGAAAGCTCTCTTGACAACGC
CAGTTGAAATCCTCGAGTACATCTGCTCAGACACAAACGGTACAAACCTG
TACCAACTCATTATTGGATTGAGACGGGAAATCTTCCGCCTTGTGGAAAA
CGGGAACCCATGGCGACCTAGGTTTTTCTTTGCCAAGTGCCTTCGCAGCC
ACGAAAAGCGGTTGTATGAGTCTCTACTATCCAAAAGGAGCGAGTGCTTC
TTAGAACCCATCGACCCACTGCCAGCTCACCCTATGGCAAGACGCGCCCG
CCCCGGGGCAAAAACAGCTGACCAACATATCGCCCAGAGACCAAAAACCC
AGGTGAGAGATCGAGAAGGCGGAGGCAGTCAGGTCACTATTGAACGCACA
CCCTTGGATGTGGGCTAA
back to top