Ggra8945.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8945.t1
Unique NameGgra8945.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length219
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:894678..895334 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog42099.EPrPV00000024813
Max annot lvl121069|Pythiales
Evalue1.19e-26
EggNOG OGs2CRG1@1|root,2R7YG@2759|Eukaryota,1MK2E@121069|Pythiales
Descriptionfunction. Source PGD
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8945Ggra8945Gracilaria gracilis GNS1m malegenetig00000860_pilon 894678..895334 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8945.t1.start1Ggra8945.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 894678..894680 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8945.t1.CDS1Ggra8945.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 894678..895334 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8945.t1.exon1Ggra8945.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 894678..895334 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8945.t1.stop1Ggra8945.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 895332..895334 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8945.t1Ggra8945.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 894678..895334 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8945.t1 ID=Ggra8945.t1|Name=Ggra8945.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=219bp
MERGLQDNEKAFLSMQDERHVPVSEVTTLPIRMSPTPVAGGQKQGPSPET
IVLSMRNEEERSANQASERALEVRSRSAEAQLRTPSASLTRHIHRPPITK
KRTPVKCKNIRSNAGNTGGRGSGFTEKEIDSLLDILEKHLPVGRDEWEAV
QRVHHSGFPDLSRNIDSLKRKFSALHRKKVPTGDPHIAKDIKSAKHIRVE
MSEWVDLNNGEDVKEVVE*
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spliced messenger RNA

>Ggra8945.t1 ID=Ggra8945.t1|Name=Ggra8945.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=657bp|location=Sequence derived from alignment at tig00000860_pilon:894678..895334+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAACGTGGTCTCCAAGACAATGAAAAGGCATTCCTCTCAATGCAGGA
TGAAAGGCACGTTCCCGTGTCGGAGGTAACCACTCTCCCAATTCGAATGT
CGCCTACGCCCGTAGCGGGTGGTCAAAAGCAGGGACCGTCTCCGGAAACC
ATCGTCCTATCAATGAGAAACGAAGAGGAAAGGTCCGCAAATCAGGCGTC
AGAGAGAGCCCTTGAGGTGAGAAGCAGAAGCGCGGAAGCGCAGCTGCGCA
CGCCATCGGCCAGCCTCACTCGCCACATTCACCGCCCGCCGATTACAAAG
AAGAGAACCCCTGTCAAATGTAAAAACATCCGCAGCAATGCTGGAAACAC
GGGGGGACGAGGGAGCGGTTTTACCGAGAAGGAAATCGATTCCCTGCTGG
ACATTTTGGAGAAGCACCTGCCGGTGGGAAGGGATGAGTGGGAGGCAGTG
CAAAGGGTACATCACTCTGGCTTTCCTGACTTGTCGCGCAATATAGACTC
GCTAAAGAGAAAGTTTTCAGCTCTGCACCGCAAAAAAGTGCCGACCGGAG
ATCCGCACATTGCGAAAGACATAAAAAGTGCGAAACATATACGGGTGGAA
ATGTCAGAGTGGGTGGACTTGAACAACGGTGAGGATGTTAAAGAAGTAGT
AGAATAG
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protein sequence of Ggra8945.t1

>Ggra8945.t1 ID=Ggra8945.t1|Name=Ggra8945.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=219bp
MERGLQDNEKAFLSMQDERHVPVSEVTTLPIRMSPTPVAGGQKQGPSPET
IVLSMRNEEERSANQASERALEVRSRSAEAQLRTPSASLTRHIHRPPITK
KRTPVKCKNIRSNAGNTGGRGSGFTEKEIDSLLDILEKHLPVGRDEWEAV
QRVHHSGFPDLSRNIDSLKRKFSALHRKKVPTGDPHIAKDIKSAKHIRVE
MSEWVDLNNGEDVKEVVE*
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mRNA from alignment at tig00000860_pilon:894678..895334+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8945.t1 ID=Ggra8945.t1|Name=Ggra8945.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=657bp|location=Sequence derived from alignment at tig00000860_pilon:894678..895334+ (Gracilaria gracilis GNS1m male)
ATGGAACGTGGTCTCCAAGACAATGAAAAGGCATTCCTCTCAATGCAGGA
TGAAAGGCACGTTCCCGTGTCGGAGGTAACCACTCTCCCAATTCGAATGT
CGCCTACGCCCGTAGCGGGTGGTCAAAAGCAGGGACCGTCTCCGGAAACC
ATCGTCCTATCAATGAGAAACGAAGAGGAAAGGTCCGCAAATCAGGCGTC
AGAGAGAGCCCTTGAGGTGAGAAGCAGAAGCGCGGAAGCGCAGCTGCGCA
CGCCATCGGCCAGCCTCACTCGCCACATTCACCGCCCGCCGATTACAAAG
AAGAGAACCCCTGTCAAATGTAAAAACATCCGCAGCAATGCTGGAAACAC
GGGGGGACGAGGGAGCGGTTTTACCGAGAAGGAAATCGATTCCCTGCTGG
ACATTTTGGAGAAGCACCTGCCGGTGGGAAGGGATGAGTGGGAGGCAGTG
CAAAGGGTACATCACTCTGGCTTTCCTGACTTGTCGCGCAATATAGACTC
GCTAAAGAGAAAGTTTTCAGCTCTGCACCGCAAAAAAGTGCCGACCGGAG
ATCCGCACATTGCGAAAGACATAAAAAGTGCGAAACATATACGGGTGGAA
ATGTCAGAGTGGGTGGACTTGAACAACGGTGAGGATGTTAAAGAAGTAGT
AGAATAG
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Coding sequence (CDS) from alignment at tig00000860_pilon:894678..895334+

>Ggra8945.t1 ID=Ggra8945.t1|Name=Ggra8945.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=657bp|location=Sequence derived from alignment at tig00000860_pilon:894678..895334+ (Gracilaria gracilis GNS1m male)
ATGGAACGTGGTCTCCAAGACAATGAAAAGGCATTCCTCTCAATGCAGGA
TGAAAGGCACGTTCCCGTGTCGGAGGTAACCACTCTCCCAATTCGAATGT
CGCCTACGCCCGTAGCGGGTGGTCAAAAGCAGGGACCGTCTCCGGAAACC
ATCGTCCTATCAATGAGAAACGAAGAGGAAAGGTCCGCAAATCAGGCGTC
AGAGAGAGCCCTTGAGGTGAGAAGCAGAAGCGCGGAAGCGCAGCTGCGCA
CGCCATCGGCCAGCCTCACTCGCCACATTCACCGCCCGCCGATTACAAAG
AAGAGAACCCCTGTCAAATGTAAAAACATCCGCAGCAATGCTGGAAACAC
GGGGGGACGAGGGAGCGGTTTTACCGAGAAGGAAATCGATTCCCTGCTGG
ACATTTTGGAGAAGCACCTGCCGGTGGGAAGGGATGAGTGGGAGGCAGTG
CAAAGGGTACATCACTCTGGCTTTCCTGACTTGTCGCGCAATATAGACTC
GCTAAAGAGAAAGTTTTCAGCTCTGCACCGCAAAAAAGTGCCGACCGGAG
ATCCGCACATTGCGAAAGACATAAAAAGTGCGAAACATATACGGGTGGAA
ATGTCAGAGTGGGTGGACTTGAACAACGGTGAGGATGTTAAAGAAGTAGT
AGAATAG
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