Ggra8944.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8944.t1
Unique NameGgra8944.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length422
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:883921..885654 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog67593.Physo140377
PFAMsPAF-AH_p_II
Max annot lvl4776|Peronosporales
KEGG rclassRC00037,RC00094
KEGG koko:K01062
KEGG ReactionR04452
KEGG Pathwayko00565,ko01100,ko01110,ko01130,map00565,map01100,map01110,map01130
Evalue3.75e-08
EggNOG OGsCOG4188@1|root,KOG3847@2759|Eukaryota,3Q7SR@4776|Peronosporales
EC3.1.1.47
DescriptionChlorophyllase enzyme
COG categoryI
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8944Ggra8944Gracilaria gracilis GNS1m malegenetig00000860_pilon 883921..885654 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8944.t1Ggra8944.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 883921..885654 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8944.t1.stop1Ggra8944.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 883921..883923 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8944.t1.CDS1Ggra8944.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 883921..884527 -
Ggra8944.t1.CDS2Ggra8944.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000860_pilon 884619..884792 -
Ggra8944.t1.CDS3Ggra8944.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000860_pilon 884916..885305 -
Ggra8944.t1.CDS4Ggra8944.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000860_pilon 885370..885422 -
Ggra8944.t1.CDS5Ggra8944.t1.CDS5Gracilaria gracilis GNS1m maleCDStig00000860_pilon 885613..885654 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8944.t1.exon1Ggra8944.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 883921..884527 -
Ggra8944.t1.exon2Ggra8944.t1.exon2Gracilaria gracilis GNS1m maleexontig00000860_pilon 884619..884792 -
Ggra8944.t1.exon3Ggra8944.t1.exon3Gracilaria gracilis GNS1m maleexontig00000860_pilon 884916..885305 -
Ggra8944.t1.exon4Ggra8944.t1.exon4Gracilaria gracilis GNS1m maleexontig00000860_pilon 885370..885422 -
Ggra8944.t1.exon5Ggra8944.t1.exon5Gracilaria gracilis GNS1m maleexontig00000860_pilon 885613..885654 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8944.t1.intron1Ggra8944.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000860_pilon 884528..884618 -
Ggra8944.t1.intron2Ggra8944.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000860_pilon 884793..884915 -
Ggra8944.t1.intron3Ggra8944.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000860_pilon 885306..885369 -
Ggra8944.t1.intron4Ggra8944.t1.intron4Gracilaria gracilis GNS1m maleintrontig00000860_pilon 885423..885612 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8944.t1.start1Ggra8944.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 885652..885654 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8944.t1 ID=Ggra8944.t1|Name=Ggra8944.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=422bp
MTLKRKHTEAKSRNPDVAEMSPEENALYDYLRHHEKFTEKTIVEVLLKLE
KLVENEIREELKGSQCGAISHGGWSWSGVHYIGLFASYMSSPTSHWAEDI
PNDGGARLAFLSCSPILNVDPKFPYEYPEAKEADGFDISLSAEVRAEQIE
KVLSFYGVMTSTFVLDVEMVIVLCHKIMRGREEQPRDMKSISDAINLRPH
RHHATRWSQSYRANMLETMLNLLEIQRASKYLKEGRLSLYECQNALEMLV
EDVEAGFNDTKSLFYRCSLMKKYIATDAEILKYRDFESGVCKIQSDQSLL
ITPEERKACKCLRCTNAEPTVGVTEEGSHPDTYEQRLERRKRRKFPRSGF
VYRNCDFIFGSAPEVDQFLSIAWNMLRGDIVEVHHSVLESILFLRMNKRF
WSMQMVQKAYHSTKKDTTGQA*
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spliced messenger RNA

>Ggra8944.t1 ID=Ggra8944.t1|Name=Ggra8944.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1266bp|location=Sequence derived from alignment at tig00000860_pilon:883921..885654- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACACTCAAAAGAAAGCACACCGAGGCTAAATCAAGGAATCCTGATGT
AGCTGAGATGTCGCCAGAGGAAAATGCCCTTTACGATTACCTTAGACATC
ATGAAAAGTTTACTGAGAAAACGATCGTGGAAGTCCTTTTGAAGCTTGAG
AAGCTGGTAGAAAATGAGATTAGAGAAGAACTGAAGGGCTCGCAATGTGG
AGCTATTTCGCACGGCGGTTGGAGTTGGAGCGGTGTTCACTACATCGGAT
TATTTGCATCGTATATGAGCAGTCCTACCTCCCATTGGGCCGAAGATATT
CCAAATGATGGAGGTGCGAGGTTGGCCTTCCTCTCTTGTTCACCAATATT
GAACGTGGATCCAAAGTTTCCTTATGAATATCCAGAAGCAAAGGAAGCTG
ATGGATTCGATATATCTCTATCTGCAGAGGTTCGTGCCGAACAAATTGAG
AAAGTTTTGTCTTTCTATGGAGTCATGACATCGACTTTTGTTCTGGATGT
GGAAATGGTTATCGTTCTGTGTCACAAGATCATGAGGGGGCGCGAAGAGC
AACCAAGAGACATGAAGTCTATCTCCGATGCCATTAATTTACGTCCGCAT
AGACATCACGCGACAAGATGGTCGCAATCTTACCGAGCAAACATGTTGGA
AACGATGTTGAATCTGTTGGAAATCCAGCGCGCCTCGAAGTATTTAAAAG
AGGGCAGGCTTTCGCTCTACGAATGTCAAAACGCCCTTGAGATGCTTGTT
GAAGACGTCGAAGCTGGTTTCAACGATACTAAATCCCTGTTTTATCGCTG
TTCTCTTATGAAGAAGTACATTGCAACAGACGCTGAAATACTGAAGTATC
GCGATTTCGAAAGCGGGGTGTGTAAAATTCAGAGTGATCAGTCTCTCTTG
ATAACTCCTGAAGAGAGGAAAGCCTGCAAGTGCCTTCGTTGTACTAATGC
GGAGCCTACTGTGGGGGTGACGGAAGAAGGGTCGCACCCAGATACCTACG
AACAGCGTCTCGAAAGAAGGAAGAGACGGAAATTCCCGAGAAGTGGGTTT
GTGTACAGAAATTGTGATTTCATTTTTGGTTCCGCTCCAGAGGTGGATCA
ATTCTTGTCTATTGCCTGGAATATGTTGAGAGGCGACATTGTGGAGGTAC
ACCATTCTGTTTTGGAGTCAATACTGTTTTTGAGGATGAACAAAAGGTTT
TGGAGCATGCAGATGGTCCAAAAAGCGTATCACTCGACGAAAAAGGACAC
CACAGGCCAAGCCTAA
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protein sequence of Ggra8944.t1

>Ggra8944.t1 ID=Ggra8944.t1|Name=Ggra8944.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=422bp
MTLKRKHTEAKSRNPDVAEMSPEENALYDYLRHHEKFTEKTIVEVLLKLE
KLVENEIREELKGSQCGAISHGGWSWSGVHYIGLFASYMSSPTSHWAEDI
PNDGGARLAFLSCSPILNVDPKFPYEYPEAKEADGFDISLSAEVRAEQIE
KVLSFYGVMTSTFVLDVEMVIVLCHKIMRGREEQPRDMKSISDAINLRPH
RHHATRWSQSYRANMLETMLNLLEIQRASKYLKEGRLSLYECQNALEMLV
EDVEAGFNDTKSLFYRCSLMKKYIATDAEILKYRDFESGVCKIQSDQSLL
ITPEERKACKCLRCTNAEPTVGVTEEGSHPDTYEQRLERRKRRKFPRSGF
VYRNCDFIFGSAPEVDQFLSIAWNMLRGDIVEVHHSVLESILFLRMNKRF
WSMQMVQKAYHSTKKDTTGQA*
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mRNA from alignment at tig00000860_pilon:883921..885654-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8944.t1 ID=Ggra8944.t1|Name=Ggra8944.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1734bp|location=Sequence derived from alignment at tig00000860_pilon:883921..885654- (Gracilaria gracilis GNS1m male)
ATGACACTCAAAAGAAAGCACACCGAGGCTAAATCAAGGAATGTACGTGC
TAGTTTATATCCTTGTGGGAGAACCCAAGACGTTGGCCAGCAAGTAACAT
CGTTCGCCCATGATTTGTTACTTCGTCATGATATATACAGATAAAGGTTA
CGACCTCTCTACTAGGCGTCTCTGTGTACTGTAAAAGAGACCATCAAGCT
AACAAACACTGACAGAAGATACCTACTTCAAGCCTGATGTAGCTGAGATG
TCGCCAGAGGAAAATGCCCTTTACGATTACCTTAGGTTAATTGCCTACCA
ACTTACCACTTTCAATTGTGGAGGATATAGAATTTCGATCCTTTTCAAGA
CATCATGAAAAGTTTACTGAGAAAACGATCGTGGAAGTCCTTTTGAAGCT
TGAGAAGCTGGTAGAAAATGAGATTAGAGAAGAACTGAAGGGCTCGCAAT
GTGGAGCTATTTCGCACGGCGGTTGGAGTTGGAGCGGTGTTCACTACATC
GGATTATTTGCATCGTATATGAGCAGTCCTACCTCCCATTGGGCCGAAGA
TATTCCAAATGATGGAGGTGCGAGGTTGGCCTTCCTCTCTTGTTCACCAA
TATTGAACGTGGATCCAAAGTTTCCTTATGAATATCCAGAAGCAAAGGAA
GCTGATGGATTCGATATATCTCTATCTGCAGAGGTTCGTGCCGAACAAAT
TGAGAAAGTTTTGTCTTTCTATGGAGTCATGACATCGACGTGGGCTATAT
GACAAACAGCACCCACCAATAGGGTTAATATGATTGTCTCGGAGTATCTC
GGAATTCCGCATGTGGCATGCAAGAGCAACTTATTAAACCTAGAAGTGAA
TTACATGGCTAGTTTTGTTCTGGATGTGGAAATGGTTATCGTTCTGTGTC
ACAAGATCATGAGGGGGCGCGAAGAGCAACCAAGAGACATGAAGTCTATC
TCCGATGCCATTAATTTACGTCCGCATAGACATCACGCGACAAGATGGTC
GCAATCTTACCGAGCAAACATGTTGGAAACGATGTTGTATGTTGTACATT
CTAGACGAGGTTGTCGAGGTTTATGATTTTGATAGCTCCAGTTCTCTTTT
CAGGACTGACGCTCACCGGTTTCGCAGGAATCTGTTGGAAATCCAGCGCG
CCTCGAAGTATTTAAAAGAGGGCAGGCTTTCGCTCTACGAATGTCAAAAC
GCCCTTGAGATGCTTGTTGAAGACGTCGAAGCTGGTTTCAACGATACTAA
ATCCCTGTTTTATCGCTGTTCTCTTATGAAGAAGTACATTGCAACAGACG
CTGAAATACTGAAGTATCGCGATTTCGAAAGCGGGGTGTGTAAAATTCAG
AGTGATCAGTCTCTCTTGATAACTCCTGAAGAGAGGAAAGCCTGCAAGTG
CCTTCGTTGTACTAATGCGGAGCCTACTGTGGGGGTGACGGAAGAAGGGT
CGCACCCAGATACCTACGAACAGCGTCTCGAAAGAAGGAAGAGACGGAAA
TTCCCGAGAAGTGGGTTTGTGTACAGAAATTGTGATTTCATTTTTGGTTC
CGCTCCAGAGGTGGATCAATTCTTGTCTATTGCCTGGAATATGTTGAGAG
GCGACATTGTGGAGGTACACCATTCTGTTTTGGAGTCAATACTGTTTTTG
AGGATGAACAAAAGGTTTTGGAGCATGCAGATGGTCCAAAAAGCGTATCA
CTCGACGAAAAAGGACACCACAGGCCAAGCCTAA
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Coding sequence (CDS) from alignment at tig00000860_pilon:883921..885654-

>Ggra8944.t1 ID=Ggra8944.t1|Name=Ggra8944.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1266bp|location=Sequence derived from alignment at tig00000860_pilon:883921..885654- (Gracilaria gracilis GNS1m male)
ATGACACTCAAAAGAAAGCACACCGAGGCTAAATCAAGGAATCCTGATGT
AGCTGAGATGTCGCCAGAGGAAAATGCCCTTTACGATTACCTTAGACATC
ATGAAAAGTTTACTGAGAAAACGATCGTGGAAGTCCTTTTGAAGCTTGAG
AAGCTGGTAGAAAATGAGATTAGAGAAGAACTGAAGGGCTCGCAATGTGG
AGCTATTTCGCACGGCGGTTGGAGTTGGAGCGGTGTTCACTACATCGGAT
TATTTGCATCGTATATGAGCAGTCCTACCTCCCATTGGGCCGAAGATATT
CCAAATGATGGAGGTGCGAGGTTGGCCTTCCTCTCTTGTTCACCAATATT
GAACGTGGATCCAAAGTTTCCTTATGAATATCCAGAAGCAAAGGAAGCTG
ATGGATTCGATATATCTCTATCTGCAGAGGTTCGTGCCGAACAAATTGAG
AAAGTTTTGTCTTTCTATGGAGTCATGACATCGACTTTTGTTCTGGATGT
GGAAATGGTTATCGTTCTGTGTCACAAGATCATGAGGGGGCGCGAAGAGC
AACCAAGAGACATGAAGTCTATCTCCGATGCCATTAATTTACGTCCGCAT
AGACATCACGCGACAAGATGGTCGCAATCTTACCGAGCAAACATGTTGGA
AACGATGTTGAATCTGTTGGAAATCCAGCGCGCCTCGAAGTATTTAAAAG
AGGGCAGGCTTTCGCTCTACGAATGTCAAAACGCCCTTGAGATGCTTGTT
GAAGACGTCGAAGCTGGTTTCAACGATACTAAATCCCTGTTTTATCGCTG
TTCTCTTATGAAGAAGTACATTGCAACAGACGCTGAAATACTGAAGTATC
GCGATTTCGAAAGCGGGGTGTGTAAAATTCAGAGTGATCAGTCTCTCTTG
ATAACTCCTGAAGAGAGGAAAGCCTGCAAGTGCCTTCGTTGTACTAATGC
GGAGCCTACTGTGGGGGTGACGGAAGAAGGGTCGCACCCAGATACCTACG
AACAGCGTCTCGAAAGAAGGAAGAGACGGAAATTCCCGAGAAGTGGGTTT
GTGTACAGAAATTGTGATTTCATTTTTGGTTCCGCTCCAGAGGTGGATCA
ATTCTTGTCTATTGCCTGGAATATGTTGAGAGGCGACATTGTGGAGGTAC
ACCATTCTGTTTTGGAGTCAATACTGTTTTTGAGGATGAACAAAAGGTTT
TGGAGCATGCAGATGGTCCAAAAAGCGTATCACTCGACGAAAAAGGACAC
CACAGGCCAAGCCTAA
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