Ggra8943.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8943.t1
Unique NameGgra8943.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length148
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:881391..882289 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702843.1
Preferred nameUBC4
PFAMsUQ_con
Max annot lvl2759|Eukaryota
KEGG rclassRC00052,RC00156
KEGG koko:K00252,ko:K06689,ko:K10746
KEGG ReactionR02487,R02488,R10074
KEGG Pathwayko00071,ko00310,ko00362,ko00380,ko01100,ko01120,ko01130,ko03430,ko04013,ko04120,ko04141,ko04624,map00071,map00310,map00362,map00380,map01100,map01120,map01130,map03430,map04013,map04120,map04141,map04624
KEGG ModuleM00032
GOsGO:0000151,GO:0000152,GO:0000209,GO:0000502,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006355,GO:0006357,GO:0006464,GO:0006508,GO:0006511,GO:0006513,GO:0006515,GO:0006605,GO:0006625,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0006984,GO:0006991,GO:0006996,GO:0007031,GO:0007088,GO:0007154,GO:0007165,GO:0007346,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009891,GO:0009893,GO:0009896,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010498,GO:0010556,GO:0010557,GO:0010559,GO:0010564,GO:0010604,GO:0010628,GO:0010638,GO:0010965,GO:0015031,GO:0015833,GO:0016043,GO:0016485,GO:0016567,GO:0016740,GO:0019005,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0019941,GO:0023052,GO:0030071,GO:0030163,GO:0030674,GO:0031146,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031331,GO:0031399,GO:0031461,GO:0031974,GO:0031981,GO:0032182,GO:0032268,GO:0032270,GO:0032436,GO:0032446,GO:0032933,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0033365,GO:0033554,GO:0034605,GO:0034613,GO:0035103,GO:0035966,GO:0035967,GO:0036211,GO:0042221,GO:0042886,GO:0043130,GO:0043161,GO:0043162,GO:0043170,GO:0043224,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043574,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045893,GO:0045931,GO:0045935,GO:0045944,GO:0046907,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051603,GO:0051604,GO:0051641,GO:0051649,GO:0051716,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051788,GO:0051865,GO:0051983,GO:0051984,GO:0060049,GO:0060090,GO:0060255,GO:0061631,GO:0061650,GO:0062033,GO:0065007,GO:0070013,GO:0070647,GO:0070727,GO:0070887,GO:0070936,GO:0071218,GO:0071310,GO:0071501,GO:0071629,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072662,GO:0072663,GO:0080090,GO:0090068,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1902680,GO:1903018,GO:1903052,GO:1903364,GO:1903506,GO:1903508,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:1990234,GO:2000112,GO:2001141,GO:2001252
Evalue3.49e-96
EggNOG OGsCOG5078@1|root,KOG0417@2759|Eukaryota
EC1.3.8.6,2.3.2.23
Descriptionprotein modification by small protein conjugation
COG categoryO
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8943Ggra8943Gracilaria gracilis GNS1m malegenetig00000860_pilon 881391..882289 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8943.t1Ggra8943.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 881391..882289 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8943.t1.start1Ggra8943.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 881391..881393 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8943.t1.CDS1Ggra8943.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 881391..881414 +
Ggra8943.t1.CDS2Ggra8943.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000860_pilon 881619..881669 +
Ggra8943.t1.CDS3Ggra8943.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000860_pilon 881803..881847 +
Ggra8943.t1.CDS4Ggra8943.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000860_pilon 881966..882289 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8943.t1.exon1Ggra8943.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 881391..881414 +
Ggra8943.t1.exon2Ggra8943.t1.exon2Gracilaria gracilis GNS1m maleexontig00000860_pilon 881619..881669 +
Ggra8943.t1.exon3Ggra8943.t1.exon3Gracilaria gracilis GNS1m maleexontig00000860_pilon 881803..881847 +
Ggra8943.t1.exon4Ggra8943.t1.exon4Gracilaria gracilis GNS1m maleexontig00000860_pilon 881966..882289 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8943.t1.intron1Ggra8943.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000860_pilon 881415..881618 +
Ggra8943.t1.intron2Ggra8943.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000860_pilon 881670..881802 +
Ggra8943.t1.intron3Ggra8943.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000860_pilon 881848..881965 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8943.t1.stop1Ggra8943.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 882287..882289 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8943.t1 ID=Ggra8943.t1|Name=Ggra8943.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=148bp
MALKRIKKELQDLGKDPPSNCSAGPASDDLFNWQATIMGPPDSPYSGGVY
FLTIHFPTDYPFKPPKISFVTRIYHPNINSNGSICLDILRDQWSPALTVS
KVLLSICSLLTDPNPDDPLVPEIAQTYKTNRARYEDTAREWTRKYAQ*
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spliced messenger RNA

>Ggra8943.t1 ID=Ggra8943.t1|Name=Ggra8943.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=444bp|location=Sequence derived from alignment at tig00000860_pilon:881391..882289+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCTGAAGCGAATCAAGAAGGAGCTCCAAGACCTTGGCAAGGACCC
ACCATCAAACTGCTCTGCTGGACCGGCCTCCGATGATCTTTTCAACTGGC
AAGCAACAATTATGGGACCGCCTGATTCACCATACTCCGGCGGTGTCTAT
TTTCTCACCATTCATTTCCCAACGGACTATCCTTTCAAGCCACCGAAGAT
CTCTTTTGTGACCCGTATTTATCACCCGAATATCAATTCAAATGGTAGCA
TATGTCTCGACATTCTCCGCGATCAATGGAGTCCTGCGCTCACCGTATCG
AAAGTTCTGCTATCCATATGTTCCCTGTTGACCGACCCCAACCCCGATGA
CCCTCTTGTGCCTGAAATCGCCCAGACTTACAAGACGAATCGCGCAAGGT
ATGAAGATACAGCCAGAGAATGGACCAGGAAGTACGCCCAGTAA
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protein sequence of Ggra8943.t1

>Ggra8943.t1 ID=Ggra8943.t1|Name=Ggra8943.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=148bp
MALKRIKKELQDLGKDPPSNCSAGPASDDLFNWQATIMGPPDSPYSGGVY
FLTIHFPTDYPFKPPKISFVTRIYHPNINSNGSICLDILRDQWSPALTVS
KVLLSICSLLTDPNPDDPLVPEIAQTYKTNRARYEDTAREWTRKYAQ*
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mRNA from alignment at tig00000860_pilon:881391..882289+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8943.t1 ID=Ggra8943.t1|Name=Ggra8943.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=899bp|location=Sequence derived from alignment at tig00000860_pilon:881391..882289+ (Gracilaria gracilis GNS1m male)
ATGGCTCTGAAGCGAATCAAGAAGGTGCGCTATCAAACCTACCGGCGTTT
CTCCTATACCCGACGTTTTCTTGCGAATCCGAATGTACCTCCGTTCTTTG
CGTCGTCGTTTCGCTATTTCGAGGCCCCTCGTTGCAGGAGACGTCTGTTC
TGCTCACCACTCCAAATTGATTCTAACCAACTCCTCGCAACGTGATATTG
CATGATTAATTCTCTGCTTGCTCAACAGGAGCTCCAAGACCTTGGCAAGG
ACCCACCATCAAACTGCTCTGCTGGACCGGTAAGTTTTCTTCGCCAACCG
AAATCCGCACGCATATCAGCATGGATCCTCCCTCCCCACCATGCTGCATA
CTGTCCAAGCGCGCGAAATCTTCTCACCCACGCTAACATATACATCTGTT
CCGCATGTTAAGGCCTCCGATGATCTTTTCAACTGGCAAGCAACAATTAT
GGGACCGGTAAGTCTATAGCCTCTGATTCAGGCACACTTGGTCTGTGTTG
TTCTCACGAAGGATTCTTCGACCGAAACGCTACTAACATCCTGTACAACT
TTGGGTTTACAAATGACCAAAACAGCCTGATTCACCATACTCCGGCGGTG
TCTATTTTCTCACCATTCATTTCCCAACGGACTATCCTTTCAAGCCACCG
AAGATCTCTTTTGTGACCCGTATTTATCACCCGAATATCAATTCAAATGG
TAGCATATGTCTCGACATTCTCCGCGATCAATGGAGTCCTGCGCTCACCG
TATCGAAAGTTCTGCTATCCATATGTTCCCTGTTGACCGACCCCAACCCC
GATGACCCTCTTGTGCCTGAAATCGCCCAGACTTACAAGACGAATCGCGC
AAGGTATGAAGATACAGCCAGAGAATGGACCAGGAAGTACGCCCAGTAA
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Coding sequence (CDS) from alignment at tig00000860_pilon:881391..882289+

>Ggra8943.t1 ID=Ggra8943.t1|Name=Ggra8943.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=444bp|location=Sequence derived from alignment at tig00000860_pilon:881391..882289+ (Gracilaria gracilis GNS1m male)
ATGGCTCTGAAGCGAATCAAGAAGGAGCTCCAAGACCTTGGCAAGGACCC
ACCATCAAACTGCTCTGCTGGACCGGCCTCCGATGATCTTTTCAACTGGC
AAGCAACAATTATGGGACCGCCTGATTCACCATACTCCGGCGGTGTCTAT
TTTCTCACCATTCATTTCCCAACGGACTATCCTTTCAAGCCACCGAAGAT
CTCTTTTGTGACCCGTATTTATCACCCGAATATCAATTCAAATGGTAGCA
TATGTCTCGACATTCTCCGCGATCAATGGAGTCCTGCGCTCACCGTATCG
AAAGTTCTGCTATCCATATGTTCCCTGTTGACCGACCCCAACCCCGATGA
CCCTCTTGTGCCTGAAATCGCCCAGACTTACAAGACGAATCGCGCAAGGT
ATGAAGATACAGCCAGAGAATGGACCAGGAAGTACGCCCAGTAA
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