Ggra8941.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8941.t1
Unique NameGgra8941.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length136
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:875158..875817 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7FJ18
PFAMsDUF2363
Max annot lvl2759|Eukaryota
Evalue8.36e-29
EggNOG OGsCOG3823@1|root,KOG4508@2759|Eukaryota
Descriptiongene silencing by RNA
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8941Ggra8941Gracilaria gracilis GNS1m malegenetig00000860_pilon 875158..875817 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8941.t1Ggra8941.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 875158..875817 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8941.t1.start1Ggra8941.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 875158..875160 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8941.t1.CDS1Ggra8941.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 875158..875442 +
Ggra8941.t1.CDS2Ggra8941.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000860_pilon 875584..875660 +
Ggra8941.t1.CDS3Ggra8941.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000860_pilon 875772..875817 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8941.t1.exon1Ggra8941.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 875158..875442 +
Ggra8941.t1.exon2Ggra8941.t1.exon2Gracilaria gracilis GNS1m maleexontig00000860_pilon 875584..875660 +
Ggra8941.t1.exon3Ggra8941.t1.exon3Gracilaria gracilis GNS1m maleexontig00000860_pilon 875772..875817 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8941.t1.intron1Ggra8941.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000860_pilon 875443..875583 +
Ggra8941.t1.intron2Ggra8941.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000860_pilon 875661..875771 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8941.t1.stop1Ggra8941.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 875815..875817 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8941.t1 ID=Ggra8941.t1|Name=Ggra8941.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=136bp
MGMKGERGAELREIISKAIKSLIPEAQRMKVRQMLNDDPKLVHLCGITPQ
KLPDLVNNNASLATDILLKLMSSTQMPKYLDALVNMDMNLQSMDIRLIKN
KNIDLQDLLVEVQGFCMGYCRIREVADLYRSLQAL*
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spliced messenger RNA

>Ggra8941.t1 ID=Ggra8941.t1|Name=Ggra8941.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=408bp|location=Sequence derived from alignment at tig00000860_pilon:875158..875817+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAATGAAAGGCGAACGTGGGGCAGAGCTGCGCGAAATCATCTCAAA
GGCTATTAAAAGCCTAATACCAGAAGCGCAGCGAATGAAAGTGCGTCAAA
TGCTGAATGATGATCCCAAGCTCGTTCATCTCTGCGGAATTACCCCACAG
AAACTACCAGACCTGGTCAATAATAACGCATCACTCGCTACGGACATCTT
ACTGAAGTTGATGTCCTCCACGCAGATGCCAAAGTATTTAGATGCACTCG
TAAACATGGATATGAATCTGCAATCGATGGATATTCGCCTCATCAAGAAC
AAAAACATAGACTTGCAAGACTTATTGGTGGAGGTCCAAGGGTTTTGTAT
GGGTTACTGCAGAATTCGTGAGGTTGCCGACCTATACAGATCTCTGCAAG
CTCTGTGA
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protein sequence of Ggra8941.t1

>Ggra8941.t1 ID=Ggra8941.t1|Name=Ggra8941.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=136bp
MGMKGERGAELREIISKAIKSLIPEAQRMKVRQMLNDDPKLVHLCGITPQ
KLPDLVNNNASLATDILLKLMSSTQMPKYLDALVNMDMNLQSMDIRLIKN
KNIDLQDLLVEVQGFCMGYCRIREVADLYRSLQAL*
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mRNA from alignment at tig00000860_pilon:875158..875817+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8941.t1 ID=Ggra8941.t1|Name=Ggra8941.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=660bp|location=Sequence derived from alignment at tig00000860_pilon:875158..875817+ (Gracilaria gracilis GNS1m male)
ATGGGAATGAAAGGCGAACGTGGGGCAGAGCTGCGCGAAATCATCTCAAA
GGCTATTAAAAGCCTAATACCAGAAGCGCAGCGAATGAAAGTGCGTCAAA
TGCTGAATGATGATCCCAAGCTCGTTCATCTCTGCGGAATTACCCCACAG
AAACTACCAGACCTGGTCAATAATAACGCATCACTCGCTACGGACATCTT
ACTGAAGTTGATGTCCTCCACGCAGATGCCAAAGTATTTAGATGCACTCG
TAAACATGGATATGAATCTGCAATCGATGGATATTGTGAGCCGTCTTTCA
AACACTGTGCAGTTGCCAAGGGAATTCATGCATGCCTACataagcaattg
tatgcgctcttgtgatgatataccggacaagcctacacaagagcgaAGCG
TTCGTTATTTCTGTGTGTTCCTGAAGCGCCTCATCAAGAACAAAAACATA
GACTTGCAAGACTTATTGGTGGAGGTCCAAGGGTTTTGTATGGGTTACTG
CAGGTAAGTACTGGTTTTCAATGTTCAAGATGATACAAAAGTTTTTTTGA
CCTTGGACTGACACTCTTGTTCATCAAATGCTGATATGGGATTCAATGCC
CTTGTGTGACACAGAATTCGTGAGGTTGCCGACCTATACAGATCTCTGCA
AGCTCTGTGA
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Coding sequence (CDS) from alignment at tig00000860_pilon:875158..875817+

>Ggra8941.t1 ID=Ggra8941.t1|Name=Ggra8941.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=408bp|location=Sequence derived from alignment at tig00000860_pilon:875158..875817+ (Gracilaria gracilis GNS1m male)
ATGGGAATGAAAGGCGAACGTGGGGCAGAGCTGCGCGAAATCATCTCAAA
GGCTATTAAAAGCCTAATACCAGAAGCGCAGCGAATGAAAGTGCGTCAAA
TGCTGAATGATGATCCCAAGCTCGTTCATCTCTGCGGAATTACCCCACAG
AAACTACCAGACCTGGTCAATAATAACGCATCACTCGCTACGGACATCTT
ACTGAAGTTGATGTCCTCCACGCAGATGCCAAAGTATTTAGATGCACTCG
TAAACATGGATATGAATCTGCAATCGATGGATATTCGCCTCATCAAGAAC
AAAAACATAGACTTGCAAGACTTATTGGTGGAGGTCCAAGGGTTTTGTAT
GGGTTACTGCAGAATTCGTGAGGTTGCCGACCTATACAGATCTCTGCAAG
CTCTGTGA
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